MD08G1179400.v1.1

Phosphoglycerate mutase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0001245
Physical Location & Seq
Forward (+)
22100838 .. 22104652
3815 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1179400.v1.1.491

Sequence Viewer

Length: 804 bp
ATGGTTTCATCCCCATCGCATACCAAAGCCAATGATTCTCGAAAGAAATCTAATGAAGCAGCTTTGATTTTGATTAGGCATGGCGAGTCATTGTGGAACGAAAAGAACTTGTTCACAGGCTGTGTTGATGTCCCTCTGAGCAAGAAGGGTGTAGAAGAGGCAATTGAAGCTGGCAAGAGAATCAGCAACATACCTGTCGACATGATCTATACATCTGCACTGATTCGTGCACAGATGACTGCCATGCTTGCCATGACACAGCACCGTCGTAAGAAGGTCCCAGTTATAATGCATAACGAGAGTGACCAGGCTAGGGCATGGAGTCAGATTTTCAGTGAAGACACAATAAAGCAAACCATTCCTGTCGTTGCAGATTGGCGATTGAATGAAAGAATGTATGGGGAATTACAGGGTCTTAATAAGCAGGAAACAGCAGACAGATATGGGAAGGAACAAGTTCACAAGTGGCGTCGGAGTTATGACATTCCCCCTCCCAATGGGGAGAGTTTGGAAATGTGTGCTCAAAGAGCTGTTGCTTATTTCAAAGATCAAATTGAACCCCAACTGTTAGCTGGAAAGAATGTTATGATTGCTGCCCACGGGAATTCATTGAGATCCATAATCATGTATCTTGACAAACTGACTTCTCAAGAGGTTATCAGTTTAGAACTATCAACTGGAATACCCATGCTTTACATTTCCAAAGAGGGAAAATTCATTCGGAGGGGAAGTCCTGCGGGGCCTGCTGAGGCTGGGGTTTATGCCTACACTAAGTTTGGCTCTTTACAGGCAGAAGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

268

Amino Acids

30.01

Weight (kDa)

9.19

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 22 - 93 4.7e-18 Histidine phosphatase superfamily (branch 1)
His_Phos_1 PF00300 117 - 225 2.3e-15 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 737
AclWI GGATC 1 cut(s) 609
AcsI RAATTY 2 cut(s) 604, 713
AcyI GRCGYC 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 313, 497
AgsI TTSAA 4 cut(s) 167, 385, 544, 557
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 4 cut(s) 62, 170, 530, 572
AluI AGCT 4 cut(s) 62, 170, 530, 572
Alw21I GWGCWC 2 cut(s) 232, 523
Alw44I GTGCAC 1 cut(s) 228
AlwI GGATC 1 cut(s) 609
AoxI GGCC 1 cut(s) 740
ApaLI GTGCAC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 59, 593
ApoI RAATTY 2 cut(s) 604, 713
Asp700I GAANNNNTTC 2 cut(s) 110, 456
AspS9I GGNCC 2 cut(s) 277, 740
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 232, 523
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 71, 580
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 308
BfaI CTAG 1 cut(s) 312
BisI GCNGC 2 cut(s) 60, 594
BlsI GCNGC 2 cut(s) 61, 595
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 277, 740
BmiI GGNNCC 2 cut(s) 279, 741
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 598
BsaXI ACNNNNNCTCC 2 cut(s) 715, 745
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 497
Bse1I ACTGG 2 cut(s) 281, 682
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 313, 497
BseMII CTCAG 2 cut(s) 128, 738
BseNI ACTGG 2 cut(s) 281, 682
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 2 cut(s) 71, 580
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 742
BsiHKAI GWGCWC 2 cut(s) 232, 523
BslFI GGGAC 2 cut(s) 116, 263
BslI CCNNNNNNNGG 2 cut(s) 313, 497
BsmFI GGGAC 2 cut(s) 116, 263
BsnI GGCC 1 cut(s) 742
Bsp1286I GDGCHC 2 cut(s) 232, 523
Bsp143I GATC 3 cut(s) 204, 547, 614
BspACI CCGC 1 cut(s) 737
BspANI GGCC 1 cut(s) 742
BspCNI CTCAG 2 cut(s) 129, 739
BspLI GGNNCC 2 cut(s) 279, 741
BspPI GGATC 1 cut(s) 609
BsrI ACTGG 2 cut(s) 281, 682
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 3 cut(s) 204, 547, 614
BssNI GRCGYC 1 cut(s) 469
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 266, 567
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 172, 249, 744
BstDEI CTNAG 3 cut(s) 137, 747, 771
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 3 cut(s) 207, 550, 617
BstMBI GATC 3 cut(s) 204, 547, 614
BstMWI GCNNNNNNNGC 4 cut(s) 167, 248, 527, 743
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 71, 580
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BsuRI GGCC 1 cut(s) 742
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 2 cut(s) 218, 340
Cac8I GCNNGC 3 cut(s) 172, 249, 744
Cfr13I GGNCC 2 cut(s) 277, 740
CseI GACGC 1 cut(s) 458
CviAII CATG 7 cut(s) 80, 202, 244, 253, 318, 625, 688
DdeI CTNAG 3 cut(s) 137, 747, 771
DpnI GATC 3 cut(s) 206, 549, 616
DpnII GATC 3 cut(s) 204, 547, 614
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 277
EcoO109I RGGNCCY 2 cut(s) 277, 740
EcoRI GAATTC 1 cut(s) 604
EcoRII CCWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 294
FaeI CATG 7 cut(s) 83, 205, 247, 256, 321, 628, 691
FaqI GGGAC 2 cut(s) 116, 263
FatI CATG 7 cut(s) 79, 201, 243, 252, 317, 624, 687
FauI CCCGC 1 cut(s) 730
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 60, 594
Fsp4HI GCNGC 2 cut(s) 60, 594
FspBI CTAG 1 cut(s) 312
GluI GCNGC 2 cut(s) 60, 594
GsaI CCCAGC 1 cut(s) 756
HaeIII GGCC 1 cut(s) 742
HgaI GACGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 469
Hin1II CATG 7 cut(s) 83, 205, 247, 256, 321, 628, 691
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 5 cut(s) 35, 86, 180, 223, 322
Hpy166II GTNNAC 4 cut(s) 114, 199, 230, 460
Hpy188I TCNGA 4 cut(s) 138, 327, 474, 723
Hpy188III TCNNGA 3 cut(s) 39, 632, 650
Hpy8I GTNNAC 4 cut(s) 114, 199, 230, 460
Hpy99I CGWCG 2 cut(s) 270, 474
HpyAV CCTTC 3 cut(s) 139, 268, 442
HpyCH4III ACNGT 2 cut(s) 266, 567
HpyCH4V TGCA 4 cut(s) 218, 230, 292, 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 248, 527, 743
HpyF3I CTNAG 3 cut(s) 137, 747, 771
Hsp92I GRCGYC 1 cut(s) 469
Hsp92II CATG 7 cut(s) 83, 205, 247, 256, 321, 628, 691
Kzo9I GATC 3 cut(s) 204, 547, 614
Lsp1109I GCAGC 2 cut(s) 71, 580
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 302
MalI GATC 3 cut(s) 206, 549, 616
MboI GATC 3 cut(s) 204, 547, 614
MboII GAAGA 2 cut(s) 167, 350
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 2 cut(s) 232, 523
MluCI AATT 5 cut(s) 162, 404, 552, 604, 713
MlyI GAGTC 2 cut(s) 95, 331
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 7 cut(s) 144, 151, 501, 646, 700, 717, 742
Mph1103I ATGCAT 1 cut(s) 294
MroXI GAANNNNTTC 2 cut(s) 110, 456
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 4 cut(s) 167, 248, 527, 743
NdeII GATC 3 cut(s) 204, 547, 614
NlaIII CATG 7 cut(s) 83, 205, 247, 256, 321, 628, 691
NlaIV GGNNCC 2 cut(s) 279, 741
NmuCI GTSAC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 294
PdmI GAANNNNTTC 2 cut(s) 110, 456
PfeI GAWTC 3 cut(s) 35, 180, 223
PkrI GCNGC 2 cut(s) 61, 595
PleI GAGTC 2 cut(s) 94, 330
PpsI GAGTC 2 cut(s) 94, 330
PpuMI RGGWCCY 1 cut(s) 277
PsiI TTATAA 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 279, 741
PspPI GGNCC 2 cut(s) 277, 740
PspPPI RGGWCCY 1 cut(s) 277
PsuI RGATCY 1 cut(s) 614
RseI CAYNNNNRTG 1 cut(s) 623
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 2 cut(s) 60, 594
Sau3AI GATC 3 cut(s) 204, 547, 614
Sau96I GGNCC 2 cut(s) 277, 740
SchI GAGTC 2 cut(s) 95, 331
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 232, 523
SetI ASST 7 cut(s) 64, 172, 196, 279, 532, 574, 657
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 648
SmoI CTYRAG 1 cut(s) 648
Sse9I AATT 5 cut(s) 162, 404, 552, 604, 713
SsiI CCGC 1 cut(s) 737
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 266, 567
TaqI TCGA 2 cut(s) 40, 198
TasI AATT 5 cut(s) 162, 404, 552, 604, 713
TfiI GAWTC 3 cut(s) 35, 180, 223
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 225, 340
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 59, 593
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 4 cut(s) 69, 402, 597, 706
TspRI CASTG 2 cut(s) 225, 340
VneI GTGCAC 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 2 cut(s) 604, 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 2 cut(s) 110, 456
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.