Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001245

Physical Location & Seq

Genomic Coordinates Reverse (-)

35430528 .. 35440163

Gene Structure 9636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1327600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGTTGCCACGGCTTTCCGCCATCCTGTTGGAGTCATTCAGCTCCATGGTTCTGTTGGTGAGACTGGCTCTGCTAGAAATTGCAGGCAGTCATCTTTCAGATTTATTTCTAAGAAGTTTGCGGTCGATGTTGGTTTGCTTAGAAAAGAACATTGTAGCTCTAGACAATGTAGACTGCATGTAATTCGTTCATCATCTTCTCAAGCTTCGACAACTGATCCAATTTTATCCACCTCCCACGGTGAAAGTTCTTTGATCTTAATTCGTCATGGTGAATCTTTGTGGAATGAGAAGAATTTGTTCACCGGTTGTGTTGATGTGCCTTTAACCAAGAAAGGTGTTGATGAAGCAATAGAAGCTGGTAAGAGAATCAGCAACATCCCTGTAGATATGATTTACACATCTTCGCTTATTCGTGCACAGATGACAGCTATGCTTGCCATGACTCAACACCACCGCAAGAAGGTGCCAATTGTTGTGCACAACGAGAGTATACAGGCAAAAACATGGAGTCAAATTTACAGTGGGGATACTAAAAAGCAATCAATTCCAGTTATAACTGCTTGGCAATTAAACGAAAGAATGTATGGTGAATTACAGGGTCTTAATAAGCTGGAGACAGCTGAAAGATATGGAAAAGAGCAAGTGCATGAGTGGCGTCGGAGTTTTGATATTCCTCCCCCCAGTGGTGAGAGTTTGGAAATGTGTTCTCAAAGAGCTGTAGCCTATTTTAAAGAACAGATTGAACCACAACTACAATCTGGAAAGAACGTTCTGGTTGCTGCCCACGGAAATTCATTGAGGTCTATTATTATGTATCTCGAGAGATTAACTTCTCAAGAGGTTATTAGCTTAGAGTTATCAACCGGAGTACCACTGCTCTATATTTTTAAGGAGGGAGAGTTTATGAGGAGAGGAAGCCCAGTTGGACCTACAGAACCTGGTGTTTATGCTTATACTAAGAGTTTAGCAATTTACAGGCAAAAATTGGATAAAAGGTTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

336

Amino Acids

37.65

Weight (kDa)

9.43

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	85 - 159	5.5e-18	Histidine phosphatase superfamily (branch 1)
His_Phos_1	PF00300	180 - 288	7.1e-15	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22170 AT1G22170 AT1G78050
fragaria_vesca	FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930
malus_domestica	MD01G1025800.v1.1 MD08G1179400.v1.1 MD15G1327600.v1.1 MD15G1364700.v1.1
prunus_persica	Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1
pyrus_communis	pycom01g05390 pycom08g15360 pycom15g32710
rosa_chinensis	RchiOBHm_Chr2g0115141 RchiOBHm_Chr7g0239871
rosa_laevigata	RLG00000000723 RLG00000018162
rosa_multiflora	Rmu_sc0000540.1_g000060 Rmu_sc0002784.1_g000017 Rmu_sc0018325.1_g000005
rosa_roxburghii	Rroxscaffold_1G00041350 Rroxscaffold_2G00130620 Rroxscaffold_3G00220740 Rroxscaffold_5G00349730
rosa_rugosa	Rorug02G0194000 Rorug02G0194000 Rorug02G0194000 Rorug07G0330700 Rorug07G0330800
rosa_samantha	Rh2AG252500 Rh2BG262000 Rh2CG257000 Rh2DG260700 Rh7AG484200 Rh7BG457300 Rh7CG501700 Rh7DG469900
rosa_wichuraiana	Rw2G019690 Rw7G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	2 cut(s)	172, 493
AciI	CCGC	3 cut(s)	19, 122, 457
AclI	AACGTT	1 cut(s)	771
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	3 cut(s)	295, 516, 793
AcyI	GRCGYC	1 cut(s)	658
AfaI	GTAC	1 cut(s)	873
AfiI	CCNNNNNNNGG	2 cut(s)	463, 686
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	746
AjnI	CCWGG	1 cut(s)	940
AloI	GAACNNNNNNTCC	2 cut(s)	756, 788
AluBI	AGCT	9 cut(s)	43, 159, 206, 359, 431, 613, 623, 719, 852
AluI	AGCT	9 cut(s)	43, 159, 206, 359, 431, 613, 623, 719, 852
Alw21I	GWGCWC	2 cut(s)	421, 483
Alw26I	GTCTC	2 cut(s)	56, 611
Alw44I	GTGCAC	2 cut(s)	417, 479
AlwI	GGATC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	1 cut(s)	821
ApaLI	GTGCAC	2 cut(s)	417, 479
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	3 cut(s)	295, 516, 793
AsiGI	ACCGGT	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	929
AsuHPI	GGTGA	6 cut(s)	71, 254, 284, 295, 602, 701
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	929
BaeGI	GKGCMC	2 cut(s)	421, 483
BaeI	ACNNNNGTAYC	2 cut(s)	855, 888
BanI	GGYRCC	1 cut(s)	466
Bbv12I	GWGCWC	2 cut(s)	421, 483
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	1 cut(s)	30
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	1 cut(s)	942
BciVI	GTATCC	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	56, 611
BfaI	CTAG	2 cut(s)	75, 162
BfmI	CTRYAG	3 cut(s)	384, 720, 933
BfuI	GTATCC	1 cut(s)	523
BisI	GCNGC	1 cut(s)	783
BlsI	GCNGC	1 cut(s)	784
Bme1390I	CCNGG	1 cut(s)	942
Bme18I	GGWCC	1 cut(s)	929
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	1 cut(s)	929
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	942
BmrI	ACTGGG	2 cut(s)	678, 917
BmuI	ACTGGG	2 cut(s)	678, 917
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	635
BpuEI	CTTGAG	2 cut(s)	186, 822
BsaHI	GRCGYC	1 cut(s)	658
BsaJI	CCNNGG	4 cut(s)	9, 46, 238, 787
BsaWI	WCCGGW	2 cut(s)	305, 866
BsaXI	ACNNNNNCTCC	2 cut(s)	887, 917
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 686
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	4 cut(s)	70, 551, 684, 923
BseBI	CCWGG	1 cut(s)	942
BseDI	CCNNGG	4 cut(s)	9, 46, 238, 787
BseGI	GGATG	2 cut(s)	22, 378
BseLI	CCNNNNNNNGG	2 cut(s)	463, 686
BseNI	ACTGG	4 cut(s)	70, 551, 684, 923
BseRI	GAGGAG	1 cut(s)	925
BseSI	GKGCMC	2 cut(s)	421, 483
BseXI	GCAGC	1 cut(s)	769
Bsh1285I	CGRYCG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	466
BshTI	ACCGGT	1 cut(s)	305
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	2 cut(s)	421, 483
BsiHKCI	CYCGRG	1 cut(s)	821
BsiSI	CCGG	2 cut(s)	306, 867
BslI	CCNNNNNNNGG	2 cut(s)	463, 686
BsmAI	GTCTC	2 cut(s)	56, 611
BsoBI	CYCGRG	1 cut(s)	821
Bsp1286I	GDGCHC	2 cut(s)	421, 483
Bsp143I	GATC	2 cut(s)	217, 255
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	3 cut(s)	19, 122, 457
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	4 cut(s)	70, 551, 684, 923
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	4 cut(s)	9, 46, 238, 787
BssMI	GATC	2 cut(s)	217, 255
BssNAI	GTATAC	1 cut(s)	494
BssNI	GRCGYC	1 cut(s)	658
BssT1I	CCWWGG	1 cut(s)	46
Bst1107I	GTATAC	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	2 cut(s)	242, 524
BstACI	GRCGYC	1 cut(s)	658
BstC8I	GCNNGC	2 cut(s)	86, 438
BstDEI	CTNAG	4 cut(s)	111, 140, 853, 960
BstDSI	CCRYGG	4 cut(s)	9, 46, 238, 787
BstF5I	GGATG	2 cut(s)	22, 378
BstKTI	GATC	2 cut(s)	220, 258
BstMAI	GTCTC	2 cut(s)	56, 611
BstMBI	GATC	2 cut(s)	217, 255
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 437, 655
BstNI	CCWGG	1 cut(s)	942
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	940
BstSFI	CTRYAG	3 cut(s)	384, 720, 933
BstSLI	GKGCMC	2 cut(s)	421, 483
BstV1I	GCAGC	1 cut(s)	769
BstXI	CCANNNNNNTGG	1 cut(s)	29
BstZ17I	GTATAC	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	523
BtgI	CCRYGG	4 cut(s)	9, 46, 238, 787
BtsCI	GGATG	2 cut(s)	22, 378
BtsI	GCAGTG	1 cut(s)	875
BtsIMutI	CAGTG	3 cut(s)	529, 691, 875
Cac8I	GCNNGC	2 cut(s)	86, 438
CaiI	CAGNNNCTG	1 cut(s)	941
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	929
CseI	GACGC	1 cut(s)	647
CsiI	ACCWGGT	1 cut(s)	940
Csp6I	GTAC	1 cut(s)	872
CspAI	ACCGGT	1 cut(s)	305
CviAII	CATG	6 cut(s)	47, 179, 269, 442, 507, 650
CviQI	GTAC	1 cut(s)	872
DdeI	CTNAG	4 cut(s)	111, 140, 853, 960
DpnI	GATC	2 cut(s)	219, 257
DpnII	GATC	2 cut(s)	217, 255
DraI	TTTAAA	1 cut(s)	733
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	929
Eco88I	CYCGRG	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	940
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	6 cut(s)	50, 182, 272, 445, 510, 653
FatI	CATG	6 cut(s)	46, 178, 268, 441, 506, 649
FblI	GTMKAC	2 cut(s)	172, 493
Fnu4HI	GCNGC	1 cut(s)	783
FokI	GGATG	2 cut(s)	9, 365
Fsp4HI	GCNGC	1 cut(s)	783
FspBI	CTAG	2 cut(s)	75, 162
GluI	GCNGC	1 cut(s)	783
GsuI	CTGGAG	1 cut(s)	635
HapII	CCGG	2 cut(s)	306, 867
HgaI	GACGC	1 cut(s)	647
Hin1I	GRCGYC	1 cut(s)	658
Hin1II	CATG	6 cut(s)	50, 182, 272, 445, 510, 653
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	5 cut(s)	33, 275, 369, 445, 511
HpaII	CCGG	2 cut(s)	306, 867
HphI	GGTGA	6 cut(s)	71, 254, 284, 295, 602, 701
Hpy166II	GTNNAC	5 cut(s)	173, 303, 419, 481, 494
Hpy188I	TCNGA	2 cut(s)	101, 663
Hpy188III	TCNNGA	5 cut(s)	162, 762, 821, 823, 839
Hpy8I	GTNNAC	5 cut(s)	173, 303, 419, 481, 494
Hpy99I	CGWCG	1 cut(s)	663
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	2 cut(s)	242, 524
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	6 cut(s)	84, 178, 419, 481, 649, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 437, 655
HpyF3I	CTNAG	4 cut(s)	111, 140, 853, 960
HpySE526I	ACGT	1 cut(s)	771
Hsp92I	GRCGYC	1 cut(s)	658
Hsp92II	CATG	6 cut(s)	50, 182, 272, 445, 510, 653
Kzo9I	GATC	2 cut(s)	217, 255
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	1 cut(s)	769
MabI	ACCWGGT	1 cut(s)	940
MaeI	CTAG	2 cut(s)	75, 162
MaeII	ACGT	1 cut(s)	771
MalI	GATC	2 cut(s)	219, 257
MboI	GATC	2 cut(s)	217, 255
MboII	GAAGA	3 cut(s)	189, 304, 396
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	2 cut(s)	421, 483
MlyI	GAGTC	3 cut(s)	42, 439, 520
MmeI	TCCRAC	3 cut(s)	10, 641, 907
MnlI	CCTC	7 cut(s)	244, 687, 795, 835, 889, 903, 908
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	7 cut(s)	260, 326, 572, 606, 732, 830, 891
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	2 cut(s)	306, 867
MspR9I	CCNGG	1 cut(s)	942
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	942
MwoI	GCNNNNNNNGC	3 cut(s)	356, 437, 655
NcoI	CCATGG	1 cut(s)	46
NdeII	GATC	2 cut(s)	217, 255
NlaIII	CATG	6 cut(s)	50, 182, 272, 445, 510, 653
NlaIV	GGNNCC	1 cut(s)	468
NspI	RCATGY	1 cut(s)	182
PaeR7I	CTCGAG	1 cut(s)	821
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	275, 369
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	784
PleI	GAGTC	3 cut(s)	41, 439, 519
PpsI	GAGTC	3 cut(s)	41, 439, 519
PsiI	TTATAA	1 cut(s)	557
Psp1406I	AACGTT	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	940
PspGI	CCWGG	1 cut(s)	940
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	929
PsrI	GAACNNNNNNTAC	2 cut(s)	738, 770
PstNI	CAGNNNCTG	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	873
RsaNI	GTAC	1 cut(s)	872
SaqAI	TTAA	7 cut(s)	260, 326, 572, 606, 732, 830, 891
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	2 cut(s)	217, 255
Sau96I	GGNCC	1 cut(s)	929
SchI	GAGTC	3 cut(s)	42, 439, 520
ScrFI	CCNGG	1 cut(s)	942
SduI	GDGCHC	2 cut(s)	421, 483
SexAI	ACCWGGT	1 cut(s)	940
SfcI	CTRYAG	3 cut(s)	384, 720, 933
Sfr274I	CTCGAG	1 cut(s)	821
SinI	GGWCC	1 cut(s)	929
SlaI	CTCGAG	1 cut(s)	821
SmlI	CTYRAG	3 cut(s)	201, 821, 837
SmoI	CTYRAG	3 cut(s)	201, 821, 837
SsiI	CCGC	3 cut(s)	19, 122, 457
SspMI	CTAG	2 cut(s)	75, 162
StyD4I	CCNGG	1 cut(s)	940
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	242, 524
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	3 cut(s)	126, 209, 822
TfiI	GAWTC	2 cut(s)	275, 369
Tru1I	TTAA	7 cut(s)	260, 326, 572, 606, 732, 830, 891
Tru9I	TTAA	7 cut(s)	260, 326, 572, 606, 732, 830, 891
TscAI	CASTG	3 cut(s)	529, 691, 882
TseI	GCWGC	1 cut(s)	782
TspDTI	ATGAA	3 cut(s)	180, 360, 786
TspGWI	ACGGA	1 cut(s)	804
TspRI	CASTG	3 cut(s)	529, 691, 882
VneI	GTGCAC	2 cut(s)	417, 479
VpaK11BI	GGWCC	1 cut(s)	929
XapI	RAATTY	3 cut(s)	295, 516, 793
XbaI	TCTAGA	1 cut(s)	161
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	821
XmiI	GTMKAC	2 cut(s)	172, 493
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	2 cut(s)	75, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.