AT1G78050

phosphoglycerate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001245
Physical Location & Seq
Forward (+)
29347581 .. 29349755
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78050.1

Sequence Viewer

Length: 999 bp
ATGGCTACTTCTACGACTATGTCTCATCAAGCGATTGGGTCTGTTGTCTCTCAAAGACCATTCAAAGCTTCTCAGTTTCTAAAGGAGCCTTTGAATAATGTACCAATGAAATTCAGACAAAAAAGATTCAAGATTGAAGCAACTGCTTCTCAGATATCTGTCGTTGACAACACTTTCTTGTCTCCGTCTCCTTCCAAGAACAAACCACATGAATCTAAGAAGAAATCAAATGAAGCAGCTTTGATATTGATTAGGCATGGAGAATCGTTATGGAATGAGAAGAATTTGTTCACGGGTTGTGTTGATGTGCCATTGACTCAGAAAGGTGTTGGAGAAGCTATTGAAGCTGGGAAGAAGATTAGTAACATTCCTGTAGATTTGATTTTCACTTCTTCTTTAATCCGTGCTCAGATGACTGCAATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAACGAGAGTGTAAAGGCGAAAACTTGGAGTCATGTTTTCAGCGAAGAAACTAGAAAACAATCTATCCCGGTTATAGCGGCTTGGCAACTGAATGAGAGAATGTATGGAGAGTTGCAGGGTTTGAACAAGAAAGAAACAGCGGAAAGATACGGGACACAACAAGTTCACGAATGGCGCAGGAGTTACGAAATTCCTCCTCCGAAAGGCGAGAGCTTGGAGATGTGTGCTGAGAGAGCAGTGGCTTATTTTGAAGACAATATCAAACCAGAGCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGGGAACTCATTGAGATCTATCATTATGTATCTTGACGATTTAACTTCTCAGGAGGTTACAACTCTAGACCTGTCCACAGGTGTACCATTGCTCTACATCTTCAAAGAAGGCAAGTTCATGAAACGAGGAAGCCCCGTCGGTTCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGGCACAATACAGAGAGAAGCTTGATGCGGCGGCGACCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

332

Amino Acids

37.22

Weight (kDa)

9.47

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 81 - 154 1.7e-16 Histidine phosphatase superfamily (branch 1)
His_Phos_1 PF00300 176 - 284 3e-14 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 548, 611, 983, 986
AcsI RAATTY 3 cut(s) 110, 283, 660
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 2 cut(s) 102, 861
AfiI CCNNNNNNNGG 1 cut(s) 674
AgsI TTSAA 8 cut(s) 64, 94, 130, 137, 344, 595, 722, 880
AluBI AGCT 8 cut(s) 68, 239, 338, 347, 684, 742, 929, 976
AluI AGCT 8 cut(s) 68, 239, 338, 347, 684, 742, 929, 976
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 4 cut(s) 27, 52, 186, 192
ApeKI GCWGC 2 cut(s) 236, 770
ApoI RAATTY 3 cut(s) 110, 283, 660
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 1 cut(s) 648
AsuC2I CCSGG 1 cut(s) 539
BaeI ACNNNNGTAYC 2 cut(s) 843, 876
BbsI GAAGAC 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 248, 757
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 4 cut(s) 27, 52, 186, 192
BfaI CTAG 2 cut(s) 522, 842
BfmI CTRYAG 1 cut(s) 372
BglII AGATCT 1 cut(s) 791
BisI GCNGC 5 cut(s) 237, 549, 771, 984, 987
BlsI GCNGC 5 cut(s) 238, 550, 772, 985, 988
Bme1390I CCNGG 1 cut(s) 539
BmiI GGNNCC 2 cut(s) 87, 456
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 3 cut(s) 448, 755, 970
BpiI GAAGAC 1 cut(s) 729
BpuMI CCSGG 1 cut(s) 539
Bsc4I CCNNNNNNNGG 1 cut(s) 674
Bse3DI GCAATG 2 cut(s) 426, 863
BseLI CCNNNNNNNGG 1 cut(s) 674
BseMI GCAATG 2 cut(s) 426, 863
BseMII CTCAG 7 cut(s) 86, 164, 332, 422, 449, 690, 839
BseRI GAGGAG 1 cut(s) 657
BseXI GCAGC 2 cut(s) 248, 757
BseYI CCCAGC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 1 cut(s) 539
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 1 cut(s) 674
BsmAI GTCTC 4 cut(s) 27, 52, 186, 192
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 637
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 1 cut(s) 791
BspACI CCGC 4 cut(s) 548, 611, 983, 986
BspCNI CTCAG 7 cut(s) 85, 163, 331, 421, 448, 691, 838
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 2 cut(s) 87, 456
BsrDI GCAATG 2 cut(s) 426, 863
BssMI GATC 1 cut(s) 791
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 426, 744
BstDEI CTNAG 8 cut(s) 72, 150, 216, 318, 408, 435, 699, 825
BstENI CCTNNNNNAGG 1 cut(s) 672
BstHHI GCGC 1 cut(s) 648
BstKTI GATC 1 cut(s) 794
BstMAI GTCTC 4 cut(s) 27, 52, 186, 192
BstMBI GATC 1 cut(s) 791
BstMWI GCNNNNNNNGC 3 cut(s) 344, 425, 704
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 248, 757
BstV2I GAAGAC 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 1 cut(s) 714
Cac8I GCNNGC 2 cut(s) 426, 744
CciI TCATGA 1 cut(s) 894
CfoI GCGC 1 cut(s) 648
Csp6I GTAC 2 cut(s) 101, 860
CviAII CATG 5 cut(s) 209, 257, 430, 503, 895
CviQI GTAC 2 cut(s) 101, 860
DdeI CTNAG 8 cut(s) 72, 150, 216, 318, 408, 435, 699, 825
DpnI GATC 1 cut(s) 793
DpnII GATC 1 cut(s) 791
Eco32I GATATC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 945
EcoNI CCTNNNNNAGG 1 cut(s) 672
EcoRV GATATC 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 5 cut(s) 212, 260, 433, 506, 898
FaqI GGGAC 1 cut(s) 637
FatI CATG 5 cut(s) 208, 256, 429, 502, 894
Fnu4HI GCNGC 5 cut(s) 237, 549, 771, 984, 987
Fsp4HI GCNGC 5 cut(s) 237, 549, 771, 984, 987
FspBI CTAG 2 cut(s) 522, 842
GlaI GCGC 1 cut(s) 647
GluI GCNGC 5 cut(s) 237, 549, 771, 984, 987
GsaI CCCAGC 1 cut(s) 351
HapII CCGG 1 cut(s) 539
HhaI GCGC 1 cut(s) 648
Hin1II CATG 5 cut(s) 212, 260, 433, 506, 898
Hin6I GCGC 1 cut(s) 646
HinP1I GCGC 1 cut(s) 646
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 66, 974
HinfI GANTC 6 cut(s) 126, 212, 263, 316, 433, 499
HpaII CCGG 1 cut(s) 539
Hpy166II GTNNAC 5 cut(s) 166, 291, 637, 852, 860
Hpy188I TCNGA 5 cut(s) 116, 153, 321, 411, 672
Hpy188III TCNNGA 7 cut(s) 130, 638, 750, 809, 827, 842, 895
Hpy8I GTNNAC 5 cut(s) 166, 291, 637, 852, 860
Hpy99I CGWCG 2 cut(s) 447, 917
HpyAV CCTTC 3 cut(s) 201, 445, 878
HpyCH4V TGCA 4 cut(s) 419, 469, 586, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 425, 704
HpyF3I CTNAG 8 cut(s) 72, 150, 216, 318, 408, 435, 699, 825
Hsp92II CATG 5 cut(s) 212, 260, 433, 506, 898
HspAI GCGC 1 cut(s) 646
Kzo9I GATC 1 cut(s) 791
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 2 cut(s) 248, 757
LweI GCATC 3 cut(s) 448, 755, 970
MaeI CTAG 2 cut(s) 522, 842
MaeIII GTNAC 3 cut(s) 362, 653, 832
MalI GATC 1 cut(s) 793
MboI GATC 1 cut(s) 791
MboII GAAGA 8 cut(s) 232, 292, 364, 367, 384, 527, 734, 868
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 3 cut(s) 110, 283, 660
MlyI GAGTC 3 cut(s) 310, 427, 508
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 4 cut(s) 675, 678, 823, 896
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 3 cut(s) 398, 818, 997
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 539
MwoI GCNNNNNNNGC 3 cut(s) 344, 425, 704
NciI CCSGG 1 cut(s) 539
NdeII GATC 1 cut(s) 791
NlaIII CATG 5 cut(s) 212, 260, 433, 506, 898
NlaIV GGNNCC 2 cut(s) 87, 456
PagI TCATGA 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 3 cut(s) 126, 212, 263
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 5 cut(s) 238, 550, 772, 985, 988
PleI GAGTC 3 cut(s) 310, 427, 507
PpsI GAGTC 3 cut(s) 310, 427, 507
PspFI CCCAGC 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 87, 456
PsuI RGATCY 1 cut(s) 791
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 2 cut(s) 102, 861
RsaNI GTAC 2 cut(s) 101, 860
SaqAI TTAA 3 cut(s) 398, 818, 997
SatI GCNGC 5 cut(s) 237, 549, 771, 984, 987
Sau3AI GATC 1 cut(s) 791
SchI GAGTC 3 cut(s) 310, 427, 508
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 1 cut(s) 409
SfaNI GCATC 3 cut(s) 448, 755, 970
SfcI CTRYAG 1 cut(s) 372
Sse9I AATT 3 cut(s) 110, 283, 660
SsiI CCGC 4 cut(s) 548, 611, 983, 986
SspMI CTAG 2 cut(s) 522, 842
StyD4I CCNGG 1 cut(s) 537
TasI AATT 3 cut(s) 110, 283, 660
TauI GCSGC 3 cut(s) 551, 986, 989
TfiI GAWTC 3 cut(s) 126, 212, 263
Tru1I TTAA 3 cut(s) 398, 818, 997
Tru9I TTAA 3 cut(s) 398, 818, 997
TscAI CASTG 1 cut(s) 714
TseI GCWGC 2 cut(s) 236, 770
TspDTI ATGAA 5 cut(s) 122, 225, 246, 883, 911
TspGWI ACGGA 2 cut(s) 174, 392
TspRI CASTG 1 cut(s) 714
Tth111I GACNNNGTC 1 cut(s) 19
XagI CCTNNNNNAGG 1 cut(s) 672
XapI RAATTY 3 cut(s) 110, 283, 660
XbaI TCTAGA 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 2 cut(s) 522, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.