Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001245

Physical Location & Seq

Genomic Coordinates Forward (+)

9798032 .. 9803794

Gene Structure 5763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1025800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGTTAGTTTTTGCCGTGGGAAAAGTGAACAAGAAATTCGCCACCTCTTTCTTATTCTGTGTTTCCCCTTCCCCACTTCCCCCGCTAATTTGTAAAAACCTCCATATCTCTCTCCATCTCTCTCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTTAAGGCATCGTTCCCTCCAAATCTTTGCAGATCGAGTCCACTCGCAGATTCCCCACAGACCCATCTTCTATTCATAATGGTTGCGACAGCTTTTCGCCATCCTGTTGGAATTTTTCACCTCCATTGTTCAGTTGGTGAGACTGGCTCTGCCAGAAATTGTAGGCAGTCATCTTTCAGATTTATCTCTAAAAATTTTGAGGTCGATGTTCGCCTGCTTAGAAAAGAACATTGTAGCTCTAGACAGTGTAAGCTGCACGTAGTTTGTTCATCGTCTTCCCAAGCTTCGACAACTGATCCAATTTTGTCTACCTCGCAAGGTGAAAGTTCTTTGGTCTTAATTCGTCATGGCGAATCTTTGTGGAATGAGAAGAACTTGTTCACCGGTTGTGTTGATGTGCCTTTAACCAAGAGAGGTGTTGATGAAGCAATAGAAGCTGGTAAGAGAATTAGCAACATCCCTGTAGATATGATTTACACATCTTCGCTAATTCGTGCACAGATGACGGCTATGCTTGCCATGACTCAACACCGCCGGAAGAAGGTGCCAATCATTGTGCATAACGAGAGTAGACAGGCGGAAACATGGAGTCAAATTTACAGTGGAGATACTAAAAAGCAATCAATTCCAGTTATAACTGCTTGGCAATTAAACGAAAGAATGTATGGTGAATTACAAGGTCTTAATAAGCTGGAGACATCTGAGAGATATGGAAAAGAGAAAGTGCATGAGTGGCGTCGGAGTTATGATATTCCTCCTCCCAGTGGTGAGAGTTTGGAAATGTGTTCTCAAAGAGCTGTAGCCTATTTTAGAGAACAGATTGAACCACAACTACAATCTGGAAAGAACGTTCTGGTTGCTGCCCACGGAAATTCATTGAGGTCTATTATTATGTATCTCGAGAGACTAACTTCTCAAGAGGTTATTAGGTTAGAGTTATCAACCGGAGTACCACTGCTCTATATCTATAAGGAGGGAGAGTTTATGAGGAGGGGAAGTCCAGTTGGACCTACAGAACCTGGTGTGTATGCACATACTAAGTTTAGCACTTTACAGGCAAGAATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

418

Amino Acids

46.56

Weight (kDa)

9.37

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	172 - 248	7.9e-18	Histidine phosphatase superfamily (branch 1)
His_Phos_1	PF00300	267 - 376	4.5e-15	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22170 AT1G22170 AT1G78050
fragaria_vesca	FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930
malus_domestica	MD01G1025800.v1.1 MD08G1179400.v1.1 MD15G1327600.v1.1 MD15G1364700.v1.1
prunus_persica	Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1
pyrus_communis	pycom01g05390 pycom08g15360 pycom15g32710
rosa_chinensis	RchiOBHm_Chr2g0115141 RchiOBHm_Chr7g0239871
rosa_laevigata	RLG00000000723 RLG00000018162
rosa_multiflora	Rmu_sc0000540.1_g000060 Rmu_sc0002784.1_g000017 Rmu_sc0018325.1_g000005
rosa_roxburghii	Rroxscaffold_1G00041350 Rroxscaffold_2G00130620 Rroxscaffold_3G00220740 Rroxscaffold_5G00349730
rosa_rugosa	Rorug02G0194000 Rorug02G0194000 Rorug02G0194000 Rorug07G0330700 Rorug07G0330800
rosa_samantha	Rh2AG252500 Rh2BG262000 Rh2CG257000 Rh2DG260700 Rh7AG484200 Rh7BG457300 Rh7CG501700 Rh7DG469900
rosa_wichuraiana	Rw2G019690 Rw7G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	727
AccI	GTMKAC	2 cut(s)	491, 754
AciI	CCGC	3 cut(s)	83, 715, 761
AclI	AACGTT	1 cut(s)	1032
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	5 cut(s)	35, 294, 376, 777, 1054
AcyI	GRCGYC	1 cut(s)	919
AfaI	GTAC	1 cut(s)	1134
AfiI	CCNNNNNNNGG	2 cut(s)	724, 947
AflII	CTTAAG	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	566
AgsI	TTSAA	1 cut(s)	1007
AjnI	CCWGG	1 cut(s)	1201
AloI	GAACNNNNNNTCC	2 cut(s)	1017, 1049
AluBI	AGCT	7 cut(s)	275, 420, 436, 467, 620, 874, 980
AluI	AGCT	7 cut(s)	275, 420, 436, 467, 620, 874, 980
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	3 cut(s)	317, 872, 1081
Alw44I	GTGCAC	1 cut(s)	678
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	1202
Ama87I	CYCGRG	1 cut(s)	1082
ApaLI	GTGCAC	1 cut(s)	678
ApeKI	GCWGC	2 cut(s)	436, 1043
ApoI	RAATTY	5 cut(s)	35, 294, 376, 777, 1054
AsiGI	ACCGGT	1 cut(s)	566
Asp700I	GAANNNNTTC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	1190
AsuHPI	GGTGA	6 cut(s)	293, 332, 515, 556, 863, 962
AvaI	CYCGRG	1 cut(s)	1082
AvaII	GGWCC	1 cut(s)	1190
BaeGI	GKGCMC	1 cut(s)	682
BaeI	ACNNNNGTAYC	2 cut(s)	1116, 1149
BanI	GGYRCC	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	2 cut(s)	423, 1030
BccI	CCATC	4 cut(s)	123, 133, 255, 291
BceAI	ACGGC	1 cut(s)	705
BciT130I	CCWGG	1 cut(s)	1203
BcoDI	GTCTC	3 cut(s)	317, 872, 1081
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	3 cut(s)	645, 981, 1194
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	437, 1044
BlsI	GCNGC	2 cut(s)	438, 1045
Bme1390I	CCNGG	1 cut(s)	1203
Bme18I	GGWCC	1 cut(s)	1190
BmeT110I	CYCGRG	1 cut(s)	1082
BmgT120I	GGNCC	1 cut(s)	1190
BmiI	GGNNCC	1 cut(s)	729
BmrFI	CCNGG	1 cut(s)	1203
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	939
BpiI	GAAGAC	1 cut(s)	450
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	1 cut(s)	896
BpuEI	CTTGAG	1 cut(s)	1083
BsaAI	YACGTR	1 cut(s)	442
BsaHI	GRCGYC	1 cut(s)	919
BsaJI	CCNNGG	2 cut(s)	15, 1048
BsaWI	WCCGGW	2 cut(s)	566, 1127
BsaXI	ACNNNNNCTCC	4 cut(s)	1148, 1165, 1178, 1195
Bsc4I	CCNNNNNNNGG	2 cut(s)	724, 947
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	4 cut(s)	331, 812, 945, 1184
BseBI	CCWGG	1 cut(s)	1203
BseDI	CCNNGG	2 cut(s)	15, 1048
BseGI	GGATG	2 cut(s)	283, 639
BseLI	CCNNNNNNNGG	2 cut(s)	724, 947
BseMII	CTCAG	1 cut(s)	876
BseNI	ACTGG	4 cut(s)	331, 812, 945, 1184
BseRI	GAGGAG	2 cut(s)	930, 1186
BseSI	GKGCMC	1 cut(s)	682
BseXI	GCAGC	2 cut(s)	423, 1030
BsgI	GTGCAG	1 cut(s)	422
BshNI	GGYRCC	1 cut(s)	727
BshTI	ACCGGT	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	682
BsiHKCI	CYCGRG	1 cut(s)	1082
BsiSI	CCGG	3 cut(s)	567, 718, 1128
BslI	CCNNNNNNNGG	2 cut(s)	724, 947
BsmAI	GTCTC	3 cut(s)	317, 872, 1081
BsoBI	CYCGRG	1 cut(s)	1082
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	2 cut(s)	215, 478
BspACI	CCGC	3 cut(s)	83, 715, 761
BspCNI	CTCAG	1 cut(s)	877
BspLI	GGNNCC	1 cut(s)	729
BspPI	GGATC	1 cut(s)	473
BspT107I	GGYRCC	1 cut(s)	727
BspTI	CTTAAG	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	566
BsrI	ACTGG	4 cut(s)	331, 812, 945, 1184
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	2 cut(s)	15, 1048
BssMI	GATC	2 cut(s)	215, 478
BssNI	GRCGYC	1 cut(s)	919
Bst2UI	CCWGG	1 cut(s)	1203
Bst4CI	ACNGT	2 cut(s)	429, 785
BstACI	GRCGYC	1 cut(s)	919
BstAFI	CTTAAG	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	398, 699
BstDEI	CTNAG	3 cut(s)	401, 885, 1221
BstDSI	CCRYGG	2 cut(s)	15, 1048
BstF5I	GGATG	2 cut(s)	283, 639
BstKTI	GATC	2 cut(s)	218, 481
BstMAI	GTCTC	3 cut(s)	317, 872, 1081
BstMBI	GATC	2 cut(s)	215, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	617, 698, 916
BstNI	CCWGG	1 cut(s)	1203
BstSCI	CCNGG	1 cut(s)	1201
BstSFI	CTRYAG	3 cut(s)	645, 981, 1194
BstSLI	GKGCMC	1 cut(s)	682
BstV1I	GCAGC	2 cut(s)	423, 1030
BstV2I	GAAGAC	1 cut(s)	450
BstXI	CCANNNNNNTGG	1 cut(s)	290
BtgI	CCRYGG	2 cut(s)	15, 1048
BtsCI	GGATG	2 cut(s)	283, 639
BtsI	GCAGTG	1 cut(s)	1136
BtsIMutI	CAGTG	4 cut(s)	434, 790, 952, 1136
Cac8I	GCNNGC	2 cut(s)	398, 699
CaiI	CAGNNNCTG	1 cut(s)	1202
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	1 cut(s)	1190
CseI	GACGC	1 cut(s)	908
CsiI	ACCWGGT	1 cut(s)	1201
Csp6I	GTAC	1 cut(s)	1133
CspAI	ACCGGT	1 cut(s)	566
CviAII	CATG	4 cut(s)	530, 703, 768, 911
CviQI	GTAC	1 cut(s)	1133
DdeI	CTNAG	3 cut(s)	401, 885, 1221
DpnI	GATC	2 cut(s)	217, 480
DpnII	GATC	2 cut(s)	215, 478
EciI	GGCGGA	1 cut(s)	776
Eco47I	GGWCC	1 cut(s)	1190
Eco88I	CYCGRG	1 cut(s)	1082
EcoRII	CCWGG	1 cut(s)	1201
FaeI	CATG	4 cut(s)	533, 706, 771, 914
FatI	CATG	4 cut(s)	529, 702, 767, 910
FauI	CCCGC	1 cut(s)	90
FblI	GTMKAC	2 cut(s)	491, 754
Fnu4HI	GCNGC	2 cut(s)	437, 1044
FokI	GGATG	2 cut(s)	270, 626
Fsp4HI	GCNGC	2 cut(s)	437, 1044
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	2 cut(s)	437, 1044
GsuI	CTGGAG	1 cut(s)	896
HapII	CCGG	3 cut(s)	567, 718, 1128
HgaI	GACGC	1 cut(s)	908
Hin1I	GRCGYC	1 cut(s)	919
Hin1II	CATG	4 cut(s)	533, 706, 771, 914
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	5 cut(s)	220, 233, 536, 706, 772
HpaII	CCGG	3 cut(s)	567, 718, 1128
HphI	GGTGA	6 cut(s)	293, 332, 515, 556, 863, 962
Hpy166II	GTNNAC	6 cut(s)	28, 224, 492, 564, 680, 755
Hpy188I	TCNGA	3 cut(s)	362, 886, 924
Hpy188III	TCNNGA	5 cut(s)	423, 1023, 1082, 1084, 1100
Hpy8I	GTNNAC	6 cut(s)	28, 224, 492, 564, 680, 755
Hpy99I	CGWCG	1 cut(s)	924
HpyAV	CCTTC	2 cut(s)	78, 718
HpyCH4III	ACNGT	2 cut(s)	429, 785
HpyCH4IV	ACGT	2 cut(s)	441, 1032
HpyCH4V	TGCA	6 cut(s)	213, 439, 680, 742, 910, 1214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	617, 698, 916
HpyF3I	CTNAG	3 cut(s)	401, 885, 1221
HpySE526I	ACGT	2 cut(s)	441, 1032
Hsp92I	GRCGYC	1 cut(s)	919
Hsp92II	CATG	4 cut(s)	533, 706, 771, 914
Kzo9I	GATC	2 cut(s)	215, 478
Lsp1109I	GCAGC	2 cut(s)	423, 1030
LweI	GCATC	1 cut(s)	200
MabI	ACCWGGT	1 cut(s)	1201
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	2 cut(s)	441, 1032
MalI	GATC	2 cut(s)	217, 480
MboI	GATC	2 cut(s)	215, 478
MboII	GAAGA	5 cut(s)	242, 450, 565, 657, 733
MhlI	GDGCHC	1 cut(s)	682
MlyI	GAGTC	3 cut(s)	229, 700, 781
MmeI	TCCRAC	3 cut(s)	271, 902, 1168
MroXI	GAANNNNTTC	1 cut(s)	560
MseI	TTAA	5 cut(s)	186, 521, 587, 833, 867
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	3 cut(s)	567, 718, 1128
MspR9I	CCNGG	1 cut(s)	1203
MvaI	CCWGG	1 cut(s)	1203
MwoI	GCNNNNNNNGC	3 cut(s)	617, 698, 916
NdeII	GATC	2 cut(s)	215, 478
NlaIII	CATG	4 cut(s)	533, 706, 771, 914
NlaIV	GGNNCC	1 cut(s)	729
PaeR7I	CTCGAG	1 cut(s)	1082
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	2 cut(s)	233, 536
PinAI	ACCGGT	1 cut(s)	566
PkrI	GCNGC	2 cut(s)	438, 1045
PleI	GAGTC	3 cut(s)	228, 700, 780
PpsI	GAGTC	3 cut(s)	228, 700, 780
Ppu21I	YACGTR	1 cut(s)	442
PsiI	TTATAA	1 cut(s)	818
Psp1406I	AACGTT	1 cut(s)	1032
Psp6I	CCWGG	1 cut(s)	1201
PspGI	CCWGG	1 cut(s)	1201
PspN4I	GGNNCC	1 cut(s)	729
PspPI	GGNCC	1 cut(s)	1190
PsrI	GAACNNNNNNTAC	2 cut(s)	999, 1031
PstNI	CAGNNNCTG	1 cut(s)	1202
RsaI	GTAC	1 cut(s)	1134
RsaNI	GTAC	1 cut(s)	1133
SaqAI	TTAA	5 cut(s)	186, 521, 587, 833, 867
SatI	GCNGC	2 cut(s)	437, 1044
Sau3AI	GATC	2 cut(s)	215, 478
Sau96I	GGNCC	1 cut(s)	1190
SchI	GAGTC	3 cut(s)	229, 700, 781
ScrFI	CCNGG	1 cut(s)	1203
SduI	GDGCHC	1 cut(s)	682
SexAI	ACCWGGT	1 cut(s)	1201
SfaNI	GCATC	1 cut(s)	200
SfcI	CTRYAG	3 cut(s)	645, 981, 1194
Sfr274I	CTCGAG	1 cut(s)	1082
SinI	GGWCC	1 cut(s)	1190
SlaI	CTCGAG	1 cut(s)	1082
SmlI	CTYRAG	3 cut(s)	185, 1082, 1098
SmoI	CTYRAG	3 cut(s)	185, 1082, 1098
SsiI	CCGC	3 cut(s)	83, 715, 761
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	1201
TaaI	ACNGT	2 cut(s)	429, 785
TaiI	ACGT	2 cut(s)	444, 1035
TaqI	TCGA	4 cut(s)	218, 387, 470, 1083
TfiI	GAWTC	2 cut(s)	233, 536
Tru1I	TTAA	5 cut(s)	186, 521, 587, 833, 867
Tru9I	TTAA	5 cut(s)	186, 521, 587, 833, 867
TscAI	CASTG	4 cut(s)	434, 790, 952, 1143
TseI	GCWGC	2 cut(s)	436, 1043
TspDTI	ATGAA	4 cut(s)	247, 441, 621, 1047
TspGWI	ACGGA	1 cut(s)	1065
TspRI	CASTG	4 cut(s)	434, 790, 952, 1143
Vha464I	CTTAAG	1 cut(s)	185
VneI	GTGCAC	1 cut(s)	678
VpaK11BI	GGWCC	1 cut(s)	1190
XapI	RAATTY	5 cut(s)	35, 294, 376, 777, 1054
XbaI	TCTAGA	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	1082
XmiI	GTMKAC	2 cut(s)	491, 754
XmnI	GAANNNNTTC	1 cut(s)	560
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.