Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001245

Physical Location & Seq

Genomic Coordinates Reverse (-)

13291961 .. 13296759

Gene Structure 4799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21310.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTGGAGTGAGAAGAACTTGTTCACTGGTTGTGTTGATGTGCCTTTGACAAAGAGAGGTGTAGATGAAGCAATAGAAGCTGGTAAGAGAATTAGCAACATCCCTGTAGATATGATCTATACATCTTCACTGATTCGTGCACAGATGACAGCCATGCTTACCATGACCCAACACCACTGCAAGAAGGTTCCAATCATTATGCACAATGAGAATCGACAGGCAAGGGCATGGAGTCAAATCTATAGTGGAGATACTGAGAAGCAATCAATTCCGGTTATAACTGCTTGGCAATTGAATGAAAGAATGTATGGTGAACTACAGGGTTTCAATAAGTTAGAGACAGCTGAAAGATATGGAATGGAGCAAGTACATGAGTGGCGTAGGAGTTACAGTAGTCCTCCTCCCAATGGTGAGAGCTTGGAAATGTGTTCCCATAGAGCTGTAGCTTATTTTAAAGACAATATTCAACCACAACTACAATCTGGTAGGCATGTGATGGTTGCTGCCCATGGGAATTCATTAAGATCTATAATCATGTATCTCGAGAAATTAACTTCCCAAGAGGTTGTTAGCCTGGAGTTACCAACTGGGCTACCACTTCTTTATATCTATAAGGAGGGGAAATTTATGAGGAGGGGAAGTCCAGTTGGACCCACACAAGCTGGTGTTTATGCTTATACTGAGGACTTAGCCCTTTGCAAGCAAAAATTGGATGAAAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

242

Amino Acids

27.51

Weight (kDa)

8.27

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	2 - 58	3.1e-10	Histidine phosphatase superfamily (branch 1)
His_Phos_1	PF00300	91 - 200	5.8e-13	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22170 AT1G22170 AT1G78050
fragaria_vesca	FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930
malus_domestica	MD01G1025800.v1.1 MD08G1179400.v1.1 MD15G1327600.v1.1 MD15G1364700.v1.1
prunus_persica	Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1
pyrus_communis	pycom01g05390 pycom08g15360 pycom15g32710
rosa_chinensis	RchiOBHm_Chr2g0115141 RchiOBHm_Chr7g0239871
rosa_laevigata	RLG00000000723 RLG00000018162
rosa_multiflora	Rmu_sc0000540.1_g000060 Rmu_sc0002784.1_g000017 Rmu_sc0018325.1_g000005
rosa_roxburghii	Rroxscaffold_1G00041350 Rroxscaffold_2G00130620 Rroxscaffold_3G00220740 Rroxscaffold_5G00349730
rosa_rugosa	Rorug02G0194000 Rorug02G0194000 Rorug02G0194000 Rorug07G0330700 Rorug07G0330800
rosa_samantha	Rh2AG252500 Rh2BG262000 Rh2CG257000 Rh2DG260700 Rh7AG484200 Rh7BG457300 Rh7CG501700 Rh7DG469900
rosa_wichuraiana	Rw2G019690 Rw7G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	514, 623
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	295, 328, 467
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	6 cut(s)	80, 344, 417, 440, 446, 662
AluI	AGCT	6 cut(s)	80, 344, 417, 440, 446, 662
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	332
Alw44I	GTGCAC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	542
ApaLI	GTGCAC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	514, 623
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	2 cut(s)	323, 422
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	1 cut(s)	490
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	332
BfmI	CTRYAG	4 cut(s)	105, 241, 317, 441
BglII	AGATCT	1 cut(s)	524
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	2 cut(s)	189, 652
BmrFI	CCNGG	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	597
BpmI	CTGGAG	1 cut(s)	596
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	4 cut(s)	376, 406, 625, 655
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	3 cut(s)	31, 592, 644
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	99, 718
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	2 cut(s)	246, 672
BseNI	ACTGG	3 cut(s)	31, 592, 644
BseRI	GAGGAG	2 cut(s)	390, 646
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	114, 524
Bsp19I	CCATGG	1 cut(s)	508
BspCNI	CTCAG	2 cut(s)	247, 673
BspLI	GGNNCC	2 cut(s)	189, 652
BsrI	ACTGG	3 cut(s)	31, 592, 644
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	2 cut(s)	114, 524
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	701
BstDEI	CTNAG	3 cut(s)	255, 681, 688
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	2 cut(s)	99, 718
BstKTI	GATC	2 cut(s)	117, 527
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	114, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	573
BstSFI	CTRYAG	4 cut(s)	105, 241, 317, 441
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	99, 718
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	3 cut(s)	24, 128, 175
Cac8I	GCNNGC	1 cut(s)	701
Cfr13I	GGNCC	1 cut(s)	650
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	7 cut(s)	154, 163, 228, 371, 491, 509, 535
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	3 cut(s)	255, 681, 688
DpnI	GATC	2 cut(s)	116, 526
DpnII	GATC	2 cut(s)	114, 524
DraI	TTTAAA	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	7 cut(s)	157, 166, 231, 374, 494, 512, 538
FatI	CATG	7 cut(s)	153, 162, 227, 370, 490, 508, 534
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	504
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	596
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	7 cut(s)	157, 166, 231, 374, 494, 512, 538
HinfI	GANTC	3 cut(s)	133, 211, 232
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	323, 422
Hpy166II	GTNNAC	3 cut(s)	24, 140, 314
Hpy188III	TCNNGA	2 cut(s)	542, 544
Hpy8I	GTNNAC	3 cut(s)	24, 140, 314
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	4 cut(s)	140, 180, 202, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	3 cut(s)	255, 681, 688
Hsp92II	CATG	7 cut(s)	157, 166, 231, 374, 494, 512, 538
Kzo9I	GATC	2 cut(s)	114, 524
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	1 cut(s)	490
MaeIII	GTNAC	2 cut(s)	386, 579
MalI	GATC	2 cut(s)	116, 526
MboI	GATC	2 cut(s)	114, 524
MboII	GAAGA	2 cut(s)	25, 117
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	7 cut(s)	90, 267, 290, 514, 548, 623, 707
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	8 cut(s)	50, 408, 411, 556, 610, 624, 627, 676
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	3 cut(s)	453, 521, 551
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	575
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	2 cut(s)	114, 524
NlaIII	CATG	7 cut(s)	157, 166, 231, 374, 494, 512, 538
NlaIV	GGNNCC	2 cut(s)	189, 652
NspI	RCATGY	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	133, 211
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	189, 652
PspPI	GGNCC	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	453, 521, 551
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	2 cut(s)	114, 524
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	9 cut(s)	61, 82, 189, 346, 419, 442, 448, 567, 664
SfcI	CTRYAG	4 cut(s)	105, 241, 317, 441
Sfr274I	CTCGAG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	7 cut(s)	90, 267, 290, 514, 548, 623, 707
SspI	AATATT	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	2 cut(s)	214, 543
TasI	AATT	7 cut(s)	90, 267, 290, 514, 548, 623, 707
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	2 cut(s)	133, 211
Tru1I	TTAA	3 cut(s)	453, 521, 551
Tru9I	TTAA	3 cut(s)	453, 521, 551
TscAI	CASTG	3 cut(s)	31, 135, 182
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	3 cut(s)	81, 312, 507
TspRI	CASTG	3 cut(s)	31, 135, 182
VneI	GTGCAC	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	2 cut(s)	514, 623
XceI	RCATGY	1 cut(s)	494
XhoI	CTCGAG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.