AT1G28560

snRNA-activating protein complex subunit-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002790
Physical Location & Seq
Reverse (-)
10038029 .. 10041544
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28560.2

Sequence Viewer

Length: 1128 bp
ATGGCTATGAAGGAAGCCTTTCCGGAAGATTACCTTTCCCAAGAGGAGCTCGAACCATCTTTAAACGTTTCTCATCATGAAAATCCATTAGCTGGGAGGGCAAAAAGGAAGAGGACAGTAAAGAATACCGAGGTAAAGAAGAGGACACTAAAGAATACTGAGGTAATGAAGATGACAGAAAAGAAGACTGAGGAAGCTTATCTTGTGAAAGTCGAGCAGCTTGCTAAACTCAAACAAAAGCAGGAGGAGGATAAAGCAGCTGTGACACTGCACTGCTTCAGCAAGACCAGTGAGACTGGTAAAGATGTAGTTGCACCTCCAGAAGGTTTTGAGCAGATGCAATCTCTTAGGTTCATAGATAATAATTACACGAAGTTGAAGCCATCTGACATCCAGGGACAAGTGGATCCGCTATTTCCTGAAGTCATTTTGTGTGTTGAGATTTATAACAGTCGCAAGGTTAAGACCCAAGAATTTTTGGTTCTAGGACGTCAAATGTTGACTGAGTTGAAGGACAATATTCACTGTGCTACAGACCAGGTGATGCAAAAGGCTGGAAAGTATGATCCCTCTGGATACTTCCTCATAGAAGATGTCTTTCACAATGATTTAAGGAATCCCTCGGCTAAAGATTACAGCTATCCTATTTTAGATTGGCTTTGGAACTCGAAAGATGAAGCTCTTAAAAAATGGGAATGTGTTTTAACCGGCGAATTACAGAAAAAGCAGAAACTGGTTCTAGGTGAAGCGAAATCTGTGGATTTACCTCGTTACAGAACTGCAGACATGCAGAGTACACACTTCTGTGATATAAGATTCAGAGTCGGAGCTAGTTATGTCTATTGTCATCAGGGAGATTGCAAGCACACGATTGTGATTCGAGACATGAGGATGAGTCATCCAGAGGACGTTCAGAACAGAGCAGCTTACCCGATCATGTTCTGGCCGAAACGTAGGATTCAGAAATGCGGTGTTTGTAAGATAAAGAGAGCTTCAAAGGTTGCAGTGGATGACAAGTGGGCAAGCGAGAACAGTAGCTATTTCTGTGATGTTTGTTTTGAGCTTCTACACTCAGAGGAAGGCCCACTTAACTGTGACTTCCCAGTGTTTGATTATGTGCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

375

Amino Acids

43.53

Weight (kDa)

7.13

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 168 - 384 5.3e-62 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AatII GACGTC 1 cut(s) 493
AccB7I CCANNNNNTGG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 22
AciI CCGC 2 cut(s) 410, 969
AclI AACGTT 1 cut(s) 66
AclWI GGATC 3 cut(s) 401, 414, 560
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 2 cut(s) 262, 441
AcyI GRCGYC 1 cut(s) 490
AfaI GTAC 1 cut(s) 796
AfiI CCNNNNNNNGG 2 cut(s) 92, 323
AgsI TTSAA 3 cut(s) 379, 511, 996
AjnI CCWGG 2 cut(s) 393, 537
AleI CACNNNNGTG 2 cut(s) 804, 872
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 2 cut(s) 287, 876
AlwI GGATC 3 cut(s) 401, 414, 560
AlwNI CAGNNNCTG 1 cut(s) 733
Aor13HI TCCGGA 1 cut(s) 22
AoxI GGCC 2 cut(s) 944, 1081
ApeKI GCWGC 3 cut(s) 217, 257, 923
ApoI RAATTY 1 cut(s) 473
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 1082
AsuHPI GGTGA 2 cut(s) 553, 755
BamHI GGATCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 229, 269, 935
BccI CCATC 2 cut(s) 64, 391
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 2 cut(s) 395, 539
BciVI GTATCC 1 cut(s) 569
BcoDI GTCTC 2 cut(s) 287, 876
BfaI CTAG 3 cut(s) 485, 740, 831
BfmI CTRYAG 2 cut(s) 531, 780
BfuI GTATCC 1 cut(s) 569
BisI GCNGC 3 cut(s) 218, 258, 924
BlsI GCNGC 3 cut(s) 219, 259, 925
Bme1390I CCNGG 2 cut(s) 395, 539
BmgT120I GGNCC 1 cut(s) 1082
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 2 cut(s) 395, 539
BmrI ACTGGG 1 cut(s) 1097
BmsI GCATC 2 cut(s) 327, 534
BmuI ACTGGG 1 cut(s) 1097
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 490
BsaJI CCNNGG 3 cut(s) 129, 394, 621
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 323
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 4 cut(s) 288, 301, 738, 1103
BseAI TCCGGA 1 cut(s) 22
BseBI CCWGG 2 cut(s) 395, 539
BseDI CCNNGG 3 cut(s) 129, 394, 621
BseGI GGATG 4 cut(s) 390, 897, 898, 1015
BseLI CCNNNNNNNGG 2 cut(s) 92, 323
BseMII CTCAG 4 cut(s) 150, 180, 495, 1086
BseNI ACTGG 4 cut(s) 288, 301, 738, 1103
BseRI GAGGAG 2 cut(s) 59, 260
BseXI GCAGC 3 cut(s) 229, 269, 935
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 254
BshFI GGCC 2 cut(s) 946, 1083
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 23, 708
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 92, 323
BsmAI GTCTC 2 cut(s) 287, 876
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 2 cut(s) 946, 1083
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 22
Bsp143I GATC 3 cut(s) 406, 565, 933
BspACI CCGC 2 cut(s) 410, 969
BspANI GGCC 2 cut(s) 946, 1083
BspCNI CTCAG 4 cut(s) 151, 181, 496, 1085
BspEI TCCGGA 1 cut(s) 22
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 408
BspMAI CTGCAG 1 cut(s) 784
BspPI GGATC 3 cut(s) 401, 414, 560
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 4 cut(s) 288, 301, 738, 1103
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 3 cut(s) 129, 394, 621
BssMI GATC 3 cut(s) 406, 565, 933
BssNI GRCGYC 1 cut(s) 490
Bst2UI CCWGG 2 cut(s) 395, 539
Bst4CI ACNGT 5 cut(s) 118, 452, 527, 1034, 1094
Bst6I CTCTTC 2 cut(s) 104, 134
BstACI GRCGYC 1 cut(s) 490
BstC8I GCNNGC 3 cut(s) 222, 863, 1024
BstDEI CTNAG 5 cut(s) 159, 189, 347, 504, 1072
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 4 cut(s) 390, 897, 898, 1015
BstKTI GATC 3 cut(s) 409, 568, 936
BstMAI GTCTC 2 cut(s) 287, 876
BstMBI GATC 3 cut(s) 406, 565, 933
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 2 cut(s) 395, 539
BstNSI RCATGY 1 cut(s) 790
BstSCI CCNGG 2 cut(s) 393, 537
BstSFI CTRYAG 2 cut(s) 531, 780
BstV1I GCAGC 3 cut(s) 229, 269, 935
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 2 cut(s) 946, 1083
BtsCI GGATG 4 cut(s) 390, 897, 898, 1015
BtsI GCAGTG 3 cut(s) 266, 271, 1011
BtsIMutI CAGTG 6 cut(s) 266, 271, 295, 523, 1011, 1110
Cac8I GCNNGC 3 cut(s) 222, 863, 1024
CaiI CAGNNNCTG 1 cut(s) 733
CciI TCATGA 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 1 cut(s) 1082
CsiI ACCWGGT 1 cut(s) 537
Csp6I GTAC 1 cut(s) 795
CviAII CATG 5 cut(s) 77, 787, 886, 937, 1121
CviQI GTAC 1 cut(s) 795
DdeI CTNAG 5 cut(s) 159, 189, 347, 504, 1072
DpnI GATC 3 cut(s) 408, 567, 935
DpnII GATC 3 cut(s) 406, 565, 933
DraI TTTAAA 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 944
Eam1104I CTCTTC 2 cut(s) 104, 134
EarI CTCTTC 2 cut(s) 104, 134
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 262, 441
EcoICRI GAGCTC 1 cut(s) 49
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoRII CCWGG 2 cut(s) 393, 537
EcoT38I GRGCYC 1 cut(s) 51
FaeI CATG 5 cut(s) 80, 790, 889, 940, 1124
FalI AAGNNNNNCTT 7 cut(s) 34, 18, 50, 186, 218, 1071, 1103
FaqI GGGAC 1 cut(s) 411
FatI CATG 5 cut(s) 76, 786, 885, 936, 1120
Fnu4HI GCNGC 3 cut(s) 218, 258, 924
FokI GGATG 4 cut(s) 377, 885, 904, 1022
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 3 cut(s) 218, 258, 924
FspBI CTAG 3 cut(s) 485, 740, 831
GluI GCNGC 3 cut(s) 218, 258, 924
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 2 cut(s) 946, 1083
HapII CCGG 2 cut(s) 23, 708
Hin1I GRCGYC 1 cut(s) 490
Hin1II CATG 5 cut(s) 80, 790, 889, 940, 1124
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 6 cut(s) 616, 816, 822, 877, 895, 958
HpaII CCGG 2 cut(s) 23, 708
HphI GGTGA 2 cut(s) 553, 755
Hpy166II GTNNAC 2 cut(s) 501, 797
Hpy188I TCNGA 6 cut(s) 388, 821, 827, 915, 963, 1075
Hpy188III TCNNGA 7 cut(s) 23, 77, 320, 419, 573, 881, 902
Hpy8I GTNNAC 2 cut(s) 501, 797
HpyAV CCTTC 4 cut(s) 4, 317, 505, 1073
HpyCH4III ACNGT 5 cut(s) 118, 452, 527, 1034, 1094
HpyCH4IV ACGT 4 cut(s) 66, 490, 909, 952
HpyCH4V TGCA 9 cut(s) 271, 314, 340, 547, 782, 790, 861, 1004, 1120
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 5 cut(s) 159, 189, 347, 504, 1072
HpySE526I ACGT 4 cut(s) 66, 490, 909, 952
Hsp92I GRCGYC 1 cut(s) 490
Hsp92II CATG 5 cut(s) 80, 790, 889, 940, 1124
Kpn2I TCCGGA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 406, 565, 933
LmnI GCTCC 2 cut(s) 46, 827
Lsp1109I GCAGC 3 cut(s) 229, 269, 935
LweI GCATC 2 cut(s) 327, 534
MabI ACCWGGT 1 cut(s) 537
MaeI CTAG 3 cut(s) 485, 740, 831
MaeII ACGT 4 cut(s) 66, 490, 909, 952
MaeIII GTNAC 3 cut(s) 262, 770, 1094
MalI GATC 3 cut(s) 408, 567, 935
MboI GATC 3 cut(s) 406, 565, 933
MboII GAAGA 6 cut(s) 38, 121, 151, 181, 196, 602
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 3 cut(s) 364, 473, 713
MlyI GAGTC 2 cut(s) 831, 904
MmeI TCCRAC 1 cut(s) 805
MroI TCCGGA 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 6 cut(s) 62, 462, 611, 684, 704, 1089
MslI CAYNNNNRTG 3 cut(s) 804, 872, 890
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 2 cut(s) 23, 708
MspR9I CCNGG 2 cut(s) 395, 539
MvaI CCWGG 2 cut(s) 395, 539
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 3 cut(s) 406, 565, 933
NlaIII CATG 5 cut(s) 80, 790, 889, 940, 1124
NlaIV GGNNCC 1 cut(s) 408
NmeAIII GCCGAG 1 cut(s) 602
NmuCI GTSAC 2 cut(s) 262, 1094
NspI RCATGY 1 cut(s) 790
OliI CACNNNNGTG 2 cut(s) 804, 872
PagI TCATGA 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 4 cut(s) 616, 816, 877, 958
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 3 cut(s) 219, 259, 925
PleI GAGTC 2 cut(s) 830, 903
PpsI GAGTC 2 cut(s) 830, 903
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 51
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 393, 537
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 2 cut(s) 393, 537
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 1 cut(s) 1082
PstI CTGCAG 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 733
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 796
RsaNI GTAC 1 cut(s) 795
RseI CAYNNNNRTG 3 cut(s) 804, 872, 890
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 6 cut(s) 62, 462, 611, 684, 704, 1089
SatI GCNGC 3 cut(s) 218, 258, 924
Sau3AI GATC 3 cut(s) 406, 565, 933
Sau96I GGNCC 1 cut(s) 1082
SchI GAGTC 2 cut(s) 831, 904
ScrFI CCNGG 2 cut(s) 395, 539
SduI GDGCHC 1 cut(s) 51
SexAI ACCWGGT 1 cut(s) 537
SfaNI GCATC 2 cut(s) 327, 534
SfcI CTRYAG 2 cut(s) 531, 780
SmiMI CAYNNNNRTG 3 cut(s) 804, 872, 890
Sse9I AATT 3 cut(s) 364, 473, 713
SsiI CCGC 2 cut(s) 410, 969
SspI AATATT 1 cut(s) 520
SspMI CTAG 3 cut(s) 485, 740, 831
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 393, 537
TaaI ACNGT 5 cut(s) 118, 452, 527, 1034, 1094
TaiI ACGT 4 cut(s) 69, 493, 912, 955
TaqI TCGA 4 cut(s) 51, 213, 668, 880
TasI AATT 3 cut(s) 364, 473, 713
TatI WGTACW 1 cut(s) 794
TfiI GAWTC 4 cut(s) 616, 816, 877, 958
Tru1I TTAA 6 cut(s) 62, 462, 611, 684, 704, 1089
Tru9I TTAA 6 cut(s) 62, 462, 611, 684, 704, 1089
TscAI CASTG 6 cut(s) 273, 278, 295, 530, 1011, 1110
TseFI GTSAC 2 cut(s) 262, 1094
TseI GCWGC 3 cut(s) 217, 257, 923
Tsp45I GTSAC 2 cut(s) 262, 1094
TspDTI ATGAA 5 cut(s) 23, 93, 182, 343, 690
TspRI CASTG 6 cut(s) 273, 278, 295, 530, 1011, 1110
Van91I CCANNNNNTGG 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 321
XapI RAATTY 1 cut(s) 473
XceI RCATGY 1 cut(s) 790
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 3 cut(s) 485, 740, 831
ZraI GACGTC 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.