Rh6BG185300

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002790
Physical Location & Seq
Reverse (-)
33996012 .. 33998469
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG185300.1

Sequence Viewer

Length: 540 bp
ATGGATGAAGATGCTAACATGGAATTTATTAATCTAGCAGGCTGTCTTTATAAAATATCATGGGCAAATGGGAAAATGAACTCTTATAATGGCAGCAGCTTAAATCAGAATCACAGATGGTTGGTCATCTTTTATTTTTTCCCCTTAGAAACACAGGTAGATTGCAGCATTCAGGATTGCATACCTGTACACCATCCAGAAGTTGCCCTTTCCATTGATGTTTACCATAATGTGCAAAACTGGATCAAGGCCCAAGGATTCTTGGTCGTTGGACGAAAAACCTTGACTGAGTTGAGGGATAAGATATACTGTTTAACAGATAAGGTGATGGAAAAAGATGGCCAGCATAATCATTCAGGATGTTTGCTCATAGAAGAGAGATTCTACAAAGATCTGAGGCTGAAATTTGCAAAAGAAGGAAAAAAAGCAGTTGTATGCAACATAACTGGCTCAAAATTGCCTCTGTTCCAAGCTGATGATATGCACAAGACACAGTTTTGCAACTTGAAATTTCAACCTTCTGATATGTCACCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

179

Amino Acids

20.61

Weight (kDa)

6.64

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 86 - 172 2.3e-14 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 51, 87
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 3 cut(s) 23, 404, 509
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 2 cut(s) 508, 515
AjnI CCWGG 1 cut(s) 532
AleI CACNNNNGTG 1 cut(s) 535
AluBI AGCT 2 cut(s) 99, 473
AluI AGCT 2 cut(s) 99, 473
AlwI GGATC 1 cut(s) 251
AoxI GGCC 2 cut(s) 249, 340
ApeKI GCWGC 3 cut(s) 93, 96, 165
ApoI RAATTY 3 cut(s) 23, 404, 509
AseI ATTAAT 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 337, 522
BalI TGGCCA 1 cut(s) 342
BbvI GCAGC 3 cut(s) 105, 108, 177
BccI CCATC 4 cut(s) 111, 201, 322, 332
BciT130I CCWGG 1 cut(s) 534
BfaI CTAG 1 cut(s) 35
BglII AGATCT 1 cut(s) 391
BisI GCNGC 3 cut(s) 94, 97, 166
BlsI GCNGC 3 cut(s) 95, 98, 167
Bme1390I CCNGG 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 253, 533
Bse1I ACTGG 2 cut(s) 245, 451
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 2 cut(s) 253, 533
BseGI GGATG 3 cut(s) 10, 193, 365
BseMII CTCAG 2 cut(s) 279, 386
BseNI ACTGG 2 cut(s) 245, 451
BseXI GCAGC 3 cut(s) 105, 108, 177
BshFI GGCC 2 cut(s) 251, 342
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 2 cut(s) 251, 342
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 243, 391
BspANI GGCC 2 cut(s) 251, 342
BspCNI CTCAG 2 cut(s) 280, 387
BspPI GGATC 1 cut(s) 251
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 2 cut(s) 245, 451
BssECI CCNNGG 2 cut(s) 253, 533
BssMI GATC 2 cut(s) 243, 391
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 2 cut(s) 311, 495
Bst6I CTCTTC 1 cut(s) 369
BstAUI TGTACA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 40, 344
BstDEI CTNAG 3 cut(s) 145, 288, 395
BstF5I GGATG 3 cut(s) 10, 193, 365
BstKTI GATC 2 cut(s) 246, 394
BstMBI GATC 2 cut(s) 243, 391
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 532
BstV1I GCAGC 3 cut(s) 105, 108, 177
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 2 cut(s) 251, 342
BtsCI GGATG 3 cut(s) 10, 193, 365
Cac8I GCNNGC 2 cut(s) 40, 344
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 19, 60
CviJI RGCY 7 cut(s) 42, 99, 251, 342, 400, 450, 473
CviKI_1 RGCY 7 cut(s) 42, 99, 251, 342, 400, 450, 473
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 3 cut(s) 145, 288, 395
DpnI GATC 2 cut(s) 245, 393
DpnII GATC 2 cut(s) 243, 391
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 2 cut(s) 22, 63
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 2 cut(s) 18, 59
Fnu4HI GCNGC 3 cut(s) 94, 97, 166
FokI GGATG 3 cut(s) 17, 180, 372
Fsp4HI GCNGC 3 cut(s) 94, 97, 166
FspBI CTAG 1 cut(s) 35
GluI GCNGC 3 cut(s) 94, 97, 166
HaeIII GGCC 2 cut(s) 251, 342
Hin1II CATG 2 cut(s) 22, 63
HinfI GANTC 3 cut(s) 109, 258, 381
HphI GGTGA 2 cut(s) 337, 522
Hpy166II GTNNAC 2 cut(s) 190, 223
Hpy188I TCNGA 3 cut(s) 108, 396, 523
Hpy188III TCNNGA 3 cut(s) 173, 197, 357
Hpy8I GTNNAC 2 cut(s) 190, 223
HpyAV CCTTC 2 cut(s) 410, 528
HpyCH4III ACNGT 2 cut(s) 311, 495
HpyCH4V TGCA 7 cut(s) 165, 180, 235, 410, 438, 484, 501
HpyF3I CTNAG 3 cut(s) 145, 288, 395
Hsp92II CATG 2 cut(s) 22, 63
Kzo9I GATC 2 cut(s) 243, 391
Lsp1109I GCAGC 3 cut(s) 105, 108, 177
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 528
MalI GATC 2 cut(s) 245, 393
MboI GATC 2 cut(s) 243, 391
MboII GAAGA 2 cut(s) 20, 386
MflI RGATCY 1 cut(s) 391
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 4 cut(s) 23, 404, 455, 509
MluNI TGGCCA 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 3 cut(s) 288, 390, 471
Mox20I TGGCCA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 342
MseI TTAA 3 cut(s) 30, 101, 314
MslI CAYNNNNRTG 1 cut(s) 535
Msp20I TGGCCA 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 534
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 1 cut(s) 534
NdeII GATC 2 cut(s) 243, 391
NlaIII CATG 2 cut(s) 22, 63
NmuCI GTSAC 1 cut(s) 528
OliI CACNNNNGTG 1 cut(s) 535
PctI GAATGC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 109, 258, 381
PkrI GCNGC 3 cut(s) 95, 98, 167
PshBI ATTAAT 1 cut(s) 30
PsiI TTATAA 2 cut(s) 51, 87
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 535
SaqAI TTAA 3 cut(s) 30, 101, 314
SatI GCNGC 3 cut(s) 94, 97, 166
Sau3AI GATC 2 cut(s) 243, 391
Sau96I GGNCC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 534
SetI ASST 7 cut(s) 101, 159, 187, 284, 327, 475, 520
SmiMI CAYNNNNRTG 1 cut(s) 535
Sse9I AATT 4 cut(s) 23, 404, 455, 509
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 532
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 311, 495
TasI AATT 4 cut(s) 23, 404, 455, 509
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 3 cut(s) 109, 258, 381
Tru1I TTAA 3 cut(s) 30, 101, 314
Tru9I TTAA 3 cut(s) 30, 101, 314
TseFI GTSAC 1 cut(s) 528
TseI GCWGC 3 cut(s) 93, 96, 165
Tsp45I GTSAC 1 cut(s) 528
TspDTI ATGAA 2 cut(s) 21, 92
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 3 cut(s) 23, 404, 509
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.