Rh7AG306600

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002790
Physical Location & Seq
Forward (+)
34276501 .. 34281620
5120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG306600.1

Sequence Viewer

Length: 429 bp
ATGATTACAGTAGCAGATGATAAAGCTATTCCTCTTACTGGCCCAAAAATATCATGGGCAAATGGGAAAATGAACTCTTGTAATGGCAGCAGCTTAAATCAGAATCACAGCATTCAGGATTGCATACCTGTACACCATACAGAAGTTGCCCTTTCCATTGATGTTTACCATAATGTGCAAAACTGGATCAAGACCCAAGGATTCTTGGTCGTTGGACGATGTTTCCTCATAGAAGATAGATTCTACAAAGATCTGAGGGTTCCTTCTGCATTATATTATAGTCAATCTCTGGAAAATTGCAAAAGAAGGAAAAAAGCAGTTGTATGCAACATAACTGGCTCAAAATTGCCTCTGTTCCAAGCTGATGATATGCACAAGACACAGTTTTGCAACTTGAAATTTCAACTTACTGATATGTCACCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

142

Amino Acids

16.05

Weight (kDa)

8.76

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 67 - 137 6.8e-08 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 194
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 397, 404
AjnI CCWGG 1 cut(s) 421
AleI CACNNNNGTG 1 cut(s) 424
AluBI AGCT 3 cut(s) 26, 93, 362
AluI AGCT 3 cut(s) 26, 93, 362
AlwI GGATC 1 cut(s) 194
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 87, 90
ApoI RAATTY 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 411
BbvI GCAGC 2 cut(s) 99, 102
BciT130I CCWGG 1 cut(s) 423
BglII AGATCT 1 cut(s) 250
BisI GCNGC 2 cut(s) 88, 91
BlsI GCNGC 2 cut(s) 89, 92
Bme1390I CCNGG 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 196, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 3 cut(s) 43, 188, 340
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 196, 422
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 3 cut(s) 43, 188, 340
BseXI GCAGC 2 cut(s) 99, 102
BshFI GGCC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 38
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 42
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 2 cut(s) 186, 250
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 194
BsrGI TGTACA 1 cut(s) 130
BsrI ACTGG 3 cut(s) 43, 188, 340
BssECI CCNNGG 2 cut(s) 196, 422
BssMI GATC 2 cut(s) 186, 250
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 10, 384
BstAUI TGTACA 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 254
BstKTI GATC 2 cut(s) 189, 253
BstMBI GATC 2 cut(s) 186, 250
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstV1I GCAGC 2 cut(s) 99, 102
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 131
CviAII CATG 1 cut(s) 54
CviJI RGCY 5 cut(s) 26, 42, 93, 339, 362
CviKI_1 RGCY 5 cut(s) 26, 42, 93, 339, 362
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 188, 252
DpnII GATC 2 cut(s) 186, 250
Eco130I CCWWGG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 1 cut(s) 57
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 88, 91
Fsp4HI GCNGC 2 cut(s) 88, 91
GluI GCNGC 2 cut(s) 88, 91
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 1 cut(s) 57
HinfI GANTC 3 cut(s) 103, 201, 240
HphI GGTGA 1 cut(s) 411
Hpy166II GTNNAC 2 cut(s) 133, 166
Hpy188I TCNGA 2 cut(s) 102, 255
Hpy188III TCNNGA 3 cut(s) 116, 190, 290
Hpy8I GTNNAC 2 cut(s) 133, 166
HpyAV CCTTC 2 cut(s) 273, 300
HpyCH4III ACNGT 2 cut(s) 10, 384
HpyCH4V TGCA 7 cut(s) 123, 178, 269, 300, 327, 373, 390
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 1 cut(s) 57
Kzo9I GATC 2 cut(s) 186, 250
LpnPI CCDG 7 cut(s) 24, 101, 141, 169, 275, 321, 408
Lsp1109I GCAGC 2 cut(s) 99, 102
MaeIII GTNAC 1 cut(s) 417
MalI GATC 2 cut(s) 188, 252
MboI GATC 2 cut(s) 186, 250
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 250
MluCI AATT 3 cut(s) 295, 344, 398
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 4 cut(s) 42, 236, 249, 360
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 424
MspR9I CCNGG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 423
NdeII GATC 2 cut(s) 186, 250
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 417
OliI CACNNNNGTG 1 cut(s) 424
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 103, 201, 240
PkrI GCNGC 2 cut(s) 89, 92
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 424
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 88, 91
Sau3AI GATC 2 cut(s) 186, 250
Sau96I GGNCC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 423
SetI ASST 4 cut(s) 28, 95, 130, 364
SmiMI CAYNNNNRTG 1 cut(s) 424
Sse9I AATT 3 cut(s) 295, 344, 398
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 10, 384
TasI AATT 3 cut(s) 295, 344, 398
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 3 cut(s) 103, 201, 240
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 2 cut(s) 87, 90
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 1 cut(s) 86
XapI RAATTY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.