Rh7BG286500

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002790
Physical Location & Seq
Forward (+)
26903920 .. 26909603
5684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG286500.1

Sequence Viewer

Length: 336 bp
ATGCTTCCATTCATAACCTTGAATGGGAACTTTGCTGCAGATTGCCAAATCATGGAATCTGTAATGATGGAAAGTCTTGACAATGATGACGCTAGTTTTGCTTGGAGACCAAGAATTCTTGGTCCTAGGACGACAAGATCAAGCAATGAGTTGAGGGATAAGATATTCTGTTTAACAGACAAGGTGATGGAAAAAGATGGTCAGCATAATCATTCAGGATATTTCCTCATAGAAGATACATTCTACAACGATCTGAGGGATCCTTCTGCTTTTTCTTATAGTGGATCTATATTTGATTGGCTTAGAAATTCAAGAGATGATGCTCTTAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

111

Amino Acids

12.84

Weight (kDa)

4.72

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 49 - 104 3.4e-14 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 52
AclWI GGATC 3 cut(s) 254, 267, 292
AcsI RAATTY 2 cut(s) 114, 307
AfiI CCNNNNNNNGG 2 cut(s) 24, 52
AgsI TTSAA 2 cut(s) 22, 312
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 3 cut(s) 254, 267, 292
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 114, 307
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspA2I CCTAGG 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 122
AvrII CCTAGG 1 cut(s) 125
BamHI GGATCC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 22
BccI CCATC 3 cut(s) 61, 181, 191
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 2 cut(s) 93, 126
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 36
BlnI CCTAGG 1 cut(s) 125
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 261
BmsI GCATC 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 52
Bse3DI GCAATG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 125
BseLI CCNNNNNNNGG 2 cut(s) 24, 52
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 24, 52
BsmAI GTCTC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 100
Bsp143I GATC 4 cut(s) 137, 250, 259, 284
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 3 cut(s) 254, 267, 292
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 4 cut(s) 137, 250, 259, 284
BssT1I CCWWGG 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 254, 302
BstKTI GATC 4 cut(s) 140, 253, 262, 287
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 4 cut(s) 137, 250, 259, 284
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 259, 284
BstYI RGATCY 2 cut(s) 259, 284
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 1 cut(s) 98
CviAII CATG 1 cut(s) 52
CviJI RGCY 1 cut(s) 301
CviKI_1 RGCY 1 cut(s) 301
DdeI CTNAG 2 cut(s) 254, 302
DpnI GATC 4 cut(s) 139, 252, 261, 286
DpnII GATC 4 cut(s) 137, 250, 259, 284
Eco130I CCWWGG 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 1 cut(s) 55
FaiI YATR 6 cut(s) 14, 53, 207, 230, 279, 290
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 93, 126
GluI GCNGC 1 cut(s) 36
HgaI GACGC 1 cut(s) 98
Hin1II CATG 1 cut(s) 55
HinfI GANTC 1 cut(s) 56
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 3 cut(s) 77, 216, 312
HpyAV CCTTC 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 254, 302
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 4 cut(s) 137, 250, 259, 284
LpnPI CCDG 1 cut(s) 201
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 310
MaeI CTAG 2 cut(s) 93, 126
MalI GATC 4 cut(s) 139, 252, 261, 286
MboI GATC 4 cut(s) 137, 250, 259, 284
MboII GAAGA 1 cut(s) 245
MflI RGATCY 2 cut(s) 259, 284
MluCI AATT 2 cut(s) 114, 307
MnlI CCTC 3 cut(s) 147, 236, 249
MseI TTAA 2 cut(s) 173, 327
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 4 cut(s) 137, 250, 259, 284
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 122
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 2 cut(s) 259, 284
SaqAI TTAA 2 cut(s) 173, 327
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 4 cut(s) 137, 250, 259, 284
Sau96I GGNCC 1 cut(s) 122
SetI ASST 2 cut(s) 20, 186
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 122
Sse9I AATT 2 cut(s) 114, 307
SspMI CTAG 2 cut(s) 93, 126
StyI CCWWGG 1 cut(s) 125
TasI AATT 2 cut(s) 114, 307
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 173, 327
Tru9I TTAA 2 cut(s) 173, 327
TseI GCWGC 1 cut(s) 35
Van91I CCANNNNNTGG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 2 cut(s) 114, 307
XmaJI CCTAGG 1 cut(s) 125
XspI CTAG 2 cut(s) 93, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.