Rw0G018570

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00833
OG0002790
Physical Location & Seq
Forward (+)
21070 .. 22450
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018570.1

Sequence Viewer

Length: 1245 bp
ATGGCAGAGAGCGGCAAAAATGCTGGTGTTGAATACCAAGAAGACACCGATGGCAAAAAATTTGATCGTGGTGAGGAGGAGCTTTCAGTTCCGAGAGGGGGACCCCTCTATATACAAGTATCTTCAGTTTCATCTCAAGTTTCTGACGAAGACATCTCAGTGGATGAGCTCAAGATCATCAGTAAGGAAGAATTAGTAGATATGGCTATCAAGGAACATGACCTTGAGACATCAGATGATAGAACTTGTAAAAGGAAACCAAGGAAAAGAAAAGAAAGGGAGACAAATGCTCTTGAGGACACTTACAGGGACAAGAAGGTTTTTTGGTCACATATTGCAAAGAAGGTGGAGCATATTAAGAAAATCAAAGAAAAGCAGGATGAAGATAAAGCAGCTGTTACACTGCATTCATACAACCCTAGTCTGAAAATAGAGGGTTGCCGTGCTGTCACATCATCCTCAAGAACAATTGAAAGGCTAAAGCCCCTCAGGTCTGCAAGTTCAGCAGTAAAGGTAAAGTCATGCAGGAACAGTAGCATTCAGGACTACATACCTGTGCACCATCCAGAAGTTGCTCTCACAGTCGAGGTTTACCACAATGTGAAAATCTGGATCAAGACACAAGAATTCTTGGTACTAGGGAGACAAAGCTTAACTGAATTGAGGGATAAGATATACTGCTTAACAGACCATGCGATGCGAAAAGATCCATCAGGATATTTCCTCATTGAGGATACATTCTACAATGATTTGCGTGACCCCTCGGCATTAGACTACAGTGAGCCTATACTTGATTGGCTTACAAACTCAAGAGATAATGCTCTTCAAAAATGGGAATCCATATTAGGTGGAGCTAACATGCAAAAGCAGAAAAAACTAGCAGTTGTTGACGGTATAAAAGGCTCACAATTGCCTCATTATAGAGTTATTGACATGCACAAGACAAAGTTTAGGGACTTGAAATTTCGACTTGGTGCTGGTTATCTGTATTGTCACCAGGGAGACTGCAGACACACCATTGTAATTAGAGACATGCGATTTCTTCATCCGGAGGATGTACAGAACAGTGCAGTTTATCCAATACTGTTATTCCAACTGAAGCTACATGTACGAAAATGTACCACAAAGGTGACTGTAGATGACAAATATGCTCCGGAGAACCCTTGCTACTTCTGCGAGCAGTGCTATTACCTTCTTCACTATAAGGGTGATGGTTCTCTGCATTATCAGGACTTTGAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

414

Amino Acids

47.92

Weight (kDa)

7.24

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 208 - 413 8.8e-59 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 12
AccIII TCCGGA 2 cut(s) 1048, 1153
AciI CCGC 1 cut(s) 12
AclWI GGATC 2 cut(s) 620, 701
AcsI RAATTY 3 cut(s) 59, 626, 962
AcuI CTGAAG 2 cut(s) 108, 1118
AdeI CACNNNGTG 1 cut(s) 601
AfaI GTAC 4 cut(s) 636, 1059, 1110, 1120
AfiI CCNNNNNNNGG 2 cut(s) 98, 730
AflIII ACRYGT 1 cut(s) 1105
AgsI TTSAA 5 cut(s) 32, 473, 827, 961, 1238
AjnI CCWGG 1 cut(s) 996
AleI CACNNNNGTG 1 cut(s) 1127
AluBI AGCT 6 cut(s) 82, 169, 395, 651, 854, 1102
AluI AGCT 6 cut(s) 82, 169, 395, 651, 854, 1102
Alw21I GWGCWC 2 cut(s) 171, 561
Alw26I GTCTC 5 cut(s) 221, 275, 637, 996, 1023
Alw44I GTGCAC 1 cut(s) 557
AlwI GGATC 2 cut(s) 620, 701
Aor13HI TCCGGA 2 cut(s) 1048, 1153
ApaLI GTGCAC 1 cut(s) 557
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 3 cut(s) 59, 626, 962
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 4 cut(s) 83, 986, 1141, 1220
AvaII GGWCC 1 cut(s) 101
AxyI CCTNAGG 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 561
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 2 cut(s) 48, 156
Bbv12I GWGCWC 2 cut(s) 171, 561
BbvI GCAGC 1 cut(s) 404
BccI CCATC 4 cut(s) 44, 570, 718, 1205
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 998
BciVI GTATCC 1 cut(s) 727
BcoDI GTCTC 5 cut(s) 221, 275, 637, 996, 1023
BfaI CTAG 3 cut(s) 420, 638, 878
BfmI CTRYAG 3 cut(s) 775, 1006, 1134
BfuI GTATCC 1 cut(s) 727
BisI GCNGC 2 cut(s) 13, 393
BlsI GCNGC 2 cut(s) 14, 394
Bme1390I CCNGG 1 cut(s) 998
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 102, 103
BmrFI CCNGG 1 cut(s) 998
BmsI GCATC 1 cut(s) 687
BpiI GAAGAC 2 cut(s) 48, 156
BpuEI CTTGAG 6 cut(s) 120, 155, 245, 314, 445, 793
BsaJI CCNNGG 3 cut(s) 260, 762, 997
BsaWI WCCGGW 2 cut(s) 1048, 1153
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 730
Bse21I CCTNAGG 1 cut(s) 488
BseAI TCCGGA 2 cut(s) 1048, 1153
BseBI CCWGG 1 cut(s) 998
BseDI CCNNGG 3 cut(s) 260, 762, 997
BseGI GGATG 6 cut(s) 169, 385, 455, 562, 1045, 1060
BseLI CCNNNNNNNGG 2 cut(s) 98, 730
BseMII CTCAG 2 cut(s) 171, 502
BseRI GAGGAG 2 cut(s) 89, 92
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 1089
BsiHKAI GWGCWC 2 cut(s) 171, 561
BsiSI CCGG 2 cut(s) 1049, 1154
BslFI GGGAC 3 cut(s) 114, 323, 968
BslI CCNNNNNNNGG 2 cut(s) 98, 730
BsmAI GTCTC 5 cut(s) 221, 275, 637, 996, 1023
BsmFI GGGAC 3 cut(s) 114, 323, 968
BsmI GAATGC 2 cut(s) 406, 537
Bsp1286I GDGCHC 2 cut(s) 171, 561
Bsp13I TCCGGA 2 cut(s) 1048, 1153
Bsp1407I TGTACA 1 cut(s) 1057
Bsp143I GATC 4 cut(s) 64, 174, 612, 706
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 170, 501
BspEI TCCGGA 2 cut(s) 1048, 1153
BspLI GGNNCC 2 cut(s) 102, 103
BspMAI CTGCAG 1 cut(s) 1010
BspPI GGATC 2 cut(s) 620, 701
BspQI GCTCTTC 1 cut(s) 828
BsrBI CCGCTC 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 1057
BssECI CCNNGG 3 cut(s) 260, 762, 997
BssMI GATC 4 cut(s) 64, 174, 612, 706
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 998
Bst4CI ACNGT 7 cut(s) 533, 583, 779, 893, 1067, 1086, 1135
Bst6I CTCTTC 1 cut(s) 828
BstAUI TGTACA 1 cut(s) 1057
BstC8I GCNNGC 1 cut(s) 1178
BstDEI CTNAG 2 cut(s) 157, 488
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 6 cut(s) 169, 385, 455, 562, 1045, 1060
BstKTI GATC 4 cut(s) 67, 177, 615, 709
BstMAI GTCTC 5 cut(s) 221, 275, 637, 996, 1023
BstMBI GATC 4 cut(s) 64, 174, 612, 706
BstMWI GCNNNNNNNGC 3 cut(s) 503, 1173, 1182
BstNI CCWGG 1 cut(s) 998
BstNSI RCATGY 4 cut(s) 862, 937, 1036, 1109
BstSCI CCNGG 1 cut(s) 996
BstSFI CTRYAG 3 cut(s) 775, 1006, 1134
BstSLI GKGCMC 1 cut(s) 561
BstV1I GCAGC 1 cut(s) 404
BstV2I GAAGAC 2 cut(s) 48, 156
BstX2I RGATCY 1 cut(s) 706
BstYI RGATCY 1 cut(s) 706
Bsu36I CCTNAGG 1 cut(s) 488
BsuI GTATCC 1 cut(s) 727
BtgZI GCGATG 1 cut(s) 710
BtsCI GGATG 6 cut(s) 169, 385, 455, 562, 1045, 1060
BtsI GCAGTG 2 cut(s) 401, 1187
BtsIMutI CAGTG 5 cut(s) 165, 401, 784, 1072, 1187
Cac8I GCNNGC 1 cut(s) 1178
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 4 cut(s) 635, 1058, 1109, 1119
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 7 cut(s) 218, 522, 692, 859, 934, 1033, 1106
CviQI GTAC 4 cut(s) 635, 1058, 1109, 1119
DdeI CTNAG 2 cut(s) 157, 488
DpnI GATC 4 cut(s) 66, 176, 614, 708
DpnII GATC 4 cut(s) 64, 174, 612, 706
DraIII CACNNNGTG 1 cut(s) 601
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 2 cut(s) 108, 1118
Eco81I CCTNAGG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoO109I RGGNCCY 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 996
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 7 cut(s) 221, 525, 695, 862, 937, 1036, 1109
FaqI GGGAC 3 cut(s) 114, 323, 968
FatI CATG 7 cut(s) 217, 521, 691, 858, 933, 1032, 1105
Fnu4HI GCNGC 2 cut(s) 13, 393
FokI GGATG 6 cut(s) 176, 392, 442, 549, 1032, 1067
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 13, 393
FspBI CTAG 3 cut(s) 420, 638, 878
GluI GCNGC 2 cut(s) 13, 393
HapII CCGG 2 cut(s) 1049, 1154
Hin1II CATG 7 cut(s) 221, 525, 695, 862, 937, 1036, 1109
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 1 cut(s) 836
HpaII CCGG 2 cut(s) 1049, 1154
HphI GGTGA 4 cut(s) 83, 986, 1141, 1220
Hpy166II GTNNAC 3 cut(s) 559, 592, 889
Hpy188I TCNGA 4 cut(s) 93, 145, 235, 426
Hpy8I GTNNAC 3 cut(s) 559, 592, 889
HpyAV CCTTC 3 cut(s) 310, 337, 1202
HpyCH4III ACNGT 7 cut(s) 533, 583, 779, 893, 1067, 1086, 1135
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 1173, 1182
HpyF3I CTNAG 2 cut(s) 157, 488
Hsp92II CATG 7 cut(s) 221, 525, 695, 862, 937, 1036, 1109
KflI GGGWCCC 1 cut(s) 101
Kpn2I TCCGGA 2 cut(s) 1048, 1153
Kzo9I GATC 4 cut(s) 64, 174, 612, 706
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 4 cut(s) 79, 349, 851, 1156
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 1 cut(s) 687
MaeI CTAG 3 cut(s) 420, 638, 878
MaeIII GTNAC 6 cut(s) 327, 397, 448, 755, 992, 1129
MalI GATC 4 cut(s) 66, 176, 614, 708
MbiI CCGCTC 1 cut(s) 12
MboI GATC 4 cut(s) 64, 174, 612, 706
MboII GAAGA 8 cut(s) 53, 114, 161, 200, 395, 815, 1034, 1187
MfeI CAATTG 2 cut(s) 468, 908
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 2 cut(s) 171, 561
MluCI AATT 8 cut(s) 59, 191, 468, 626, 659, 908, 962, 1023
MmeI TCCRAC 1 cut(s) 1117
MroI TCCGGA 2 cut(s) 1048, 1153
MseI TTAA 3 cut(s) 357, 653, 683
MslI CAYNNNNRTG 3 cut(s) 158, 554, 1127
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 1049, 1154
MspR9I CCNGG 1 cut(s) 998
MunI CAATTG 2 cut(s) 468, 908
Mva1269I GAATGC 2 cut(s) 406, 537
MvaI CCWGG 1 cut(s) 998
MwoI GCNNNNNNNGC 3 cut(s) 503, 1173, 1182
NdeII GATC 4 cut(s) 64, 174, 612, 706
NlaIII CATG 7 cut(s) 221, 525, 695, 862, 937, 1036, 1109
NlaIV GGNNCC 2 cut(s) 102, 103
NmeAIII GCCGAG 1 cut(s) 743
NmuCI GTSAC 5 cut(s) 327, 448, 755, 992, 1129
NspI RCATGY 4 cut(s) 862, 937, 1036, 1109
OliI CACNNNNGTG 1 cut(s) 1127
PciI ACATGT 1 cut(s) 1105
PciSI GCTCTTC 1 cut(s) 828
PctI GAATGC 2 cut(s) 406, 537
PfeI GAWTC 1 cut(s) 836
PkrI GCNGC 2 cut(s) 14, 394
PpuMI RGGWCCY 1 cut(s) 101
PscI ACATGT 1 cut(s) 1105
Psp124BI GAGCTC 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 996
PspGI CCWGG 1 cut(s) 996
PspN4I GGNNCC 2 cut(s) 102, 103
PspPI GGNCC 1 cut(s) 101
PspPPI RGGWCCY 1 cut(s) 101
PsrI GAACNNNNNNTAC 2 cut(s) 1151, 1183
PstI CTGCAG 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 706
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 4 cut(s) 636, 1059, 1110, 1120
RsaNI GTAC 4 cut(s) 635, 1058, 1109, 1119
RseI CAYNNNNRTG 3 cut(s) 158, 554, 1127
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 3 cut(s) 357, 653, 683
SatI GCNGC 2 cut(s) 13, 393
Sau3AI GATC 4 cut(s) 64, 174, 612, 706
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 998
SduI GDGCHC 2 cut(s) 171, 561
SfaNI GCATC 1 cut(s) 687
SfcI CTRYAG 3 cut(s) 775, 1006, 1134
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 3 cut(s) 158, 554, 1127
SmlI CTYRAG 6 cut(s) 135, 170, 224, 293, 460, 808
SmoI CTYRAG 6 cut(s) 135, 170, 224, 293, 460, 808
Sse9I AATT 8 cut(s) 59, 191, 468, 626, 659, 908, 962, 1023
SsiI CCGC 1 cut(s) 12
SspMI CTAG 3 cut(s) 420, 638, 878
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 996
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 7 cut(s) 533, 583, 779, 893, 1067, 1086, 1135
TaqI TCGA 2 cut(s) 585, 967
TasI AATT 8 cut(s) 59, 191, 468, 626, 659, 908, 962, 1023
TatI WGTACW 1 cut(s) 1057
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 836
Tru1I TTAA 3 cut(s) 357, 653, 683
Tru9I TTAA 3 cut(s) 357, 653, 683
TscAI CASTG 5 cut(s) 165, 408, 784, 1072, 1187
TseFI GTSAC 5 cut(s) 327, 448, 755, 992, 1129
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 5 cut(s) 327, 448, 755, 992, 1129
TspDTI ATGAA 4 cut(s) 120, 396, 399, 1034
TspRI CASTG 5 cut(s) 165, 408, 784, 1072, 1187
VneI GTGCAC 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 728
XapI RAATTY 3 cut(s) 59, 626, 962
XceI RCATGY 4 cut(s) 862, 937, 1036, 1109
XspI CTAG 3 cut(s) 420, 638, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.