Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002790

Physical Location & Seq

Genomic Coordinates Forward (+)

56913220 .. 56914626

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG406900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCAGAAGGCGGCAAAAATGCTGGTGTTGAATACCAAGAAGACACCAATGGCAAAAAATTTGATCGTGGTGAGGAGGAGGAGGAGCTTTCAGTTCCGAGAGGGGGGCCCCTCTACGTTCATAATCTGATGAGTCCAATCACCAGTGTCCCTTTCTTCCAGTCTTCGATTCTCCAACAACTGCAGGATTTAGAGGTAGAAGTATCTTCAGTTTCATCTCAAGTTTCTGACGAAGACATCTCGGTGGATGAGCTCAAGATCATCAGTGAGGAAGAATTAGTAGATATGGCTATCAAGGAAGTACTTAAGGATGATGAAAAAGCTCCCAATGAAGGGATAGCAGATGACCTTGAGACATCAGATGATAGAACTTGTAAAAAGAAACCAAGGAAAAGAAAAGAAAGGGAGGCAAATGCTCTTGAGGACACTTACAGGGACAAGAAGGTTTTTTGGTCACATATTGCAAAGAAGGTGGAGCATATTAAGAAAATCAAAGAAAAACAGGATGAAGATAAAGCAGCTGTTACACTGCATTCATACAACCCTAGTCTGAAAATCGAGGGTCGCCGTGCTGTCACATCATCCTCAACCTTAAAGCCCCTCAGGTCTGCAAGTTCAGCAGTAAAGGACTTTGAAGTGTATGATTATCAGCACGATCAACCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-SNAP50_C

Protein Analysis

222

Amino Acids

25.18

Weight (kDa)

5.03

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28560 AT1G28560 AT1G28560
fragaria_vesca	FvH4_6g39210
malus_domestica	MD17G1131000.v1.1
prunus_persica	Prupe.3G183500_v2.0.a1 Prupe.3G183500_v2.0.a1 Prupe.3G183500_v2.0.a1
pyrus_communis	pycom16g05160 pycom16g05170 pycom17g12360
rosa_chinensis	RchiOBHm_Chr2g0153021 RchiOBHm_Chr6g0271881 RchiOBHm_Chr6g0271891 RchiOBHm_Chr6g0271991 RchiOBHm_Chr7g0217251 RchiOBHm_Chr7g0230211
rosa_laevigata	RLG00000001509
rosa_multiflora	Rmu_co8265699.1_g000001 Rmu_sc0002822.1_g000021 Rmu_sc0004110.1_g000009
rosa_roxburghii	Rroxscaffold_2G00095280
rosa_rugosa	Rorug02G0436800 Rorug07G0260000
rosa_samantha	Rh2BG510300 Rh2CG485300 Rh2DG521800 Rh6BG185300 Rh7AG298300 Rh7AG306600 Rh7AG409100 Rh7BG286500 Rh7BG388900 Rh7CG325600 Rh7CG427800 Rh7DG406900
rosa_wichuraiana	Rw0G018570 Rw0G022600 Rw2G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	104, 332, 333
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	32, 635
AluBI	AGCT	4 cut(s)	88, 253, 323, 521
AluI	AGCT	4 cut(s)	88, 253, 323, 521
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	347
AoxI	GGCC	1 cut(s)	107
ApaI	GGGCCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	107, 108
AsuHPI	GGTGA	2 cut(s)	83, 133
AxyI	CCTNAGG	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	111, 255
BbsI	GAAGAC	3 cut(s)	48, 156, 240
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	13, 519
BlsI	GCNGC	2 cut(s)	14, 520
BmcAI	AGTACT	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	107, 108
BmiI	GGNNCC	3 cut(s)	108, 109, 110
BpiI	GAAGAC	3 cut(s)	48, 156, 240
BpuEI	CTTGAG	4 cut(s)	204, 239, 371, 440
BsaJI	CCNNGG	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 332, 333
Bse1I	ACTGG	2 cut(s)	144, 160
Bse21I	CCTNAGG	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	4 cut(s)	253, 316, 511, 581
BseLI	CCNNNNNNNGG	3 cut(s)	104, 332, 333
BseMII	CTCAG	1 cut(s)	616
BseNI	ACTGG	2 cut(s)	144, 160
BseRI	GAGGAG	4 cut(s)	89, 92, 95, 98
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	530
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	255
BslFI	GGGAC	2 cut(s)	134, 449
BslI	CCNNNNNNNGG	3 cut(s)	104, 332, 333
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	134, 449
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	109
Bsp120I	GGGCCC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	111, 255
Bsp143I	GATC	3 cut(s)	64, 258, 655
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	615
BspLI	GGNNCC	3 cut(s)	108, 109, 110
BspMAI	CTGCAG	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	144, 160
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	3 cut(s)	64, 258, 655
BssT1I	CCWWGG	1 cut(s)	386
BstAFI	CTTAAG	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	602
BstF5I	GGATG	4 cut(s)	253, 316, 511, 581
BstKTI	GATC	3 cut(s)	67, 261, 658
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	3 cut(s)	64, 258, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	530
BstV2I	GAAGAC	3 cut(s)	48, 156, 240
Bsu36I	CCTNAGG	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	4 cut(s)	253, 316, 511, 581
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	3 cut(s)	151, 271, 527
Cfr13I	GGNCC	2 cut(s)	107, 108
Csp6I	GTAC	1 cut(s)	302
CspCI	CAANNNNNGTGG	2 cut(s)	453, 488
CviJI	RGCY	7 cut(s)	88, 109, 253, 290, 323, 521, 598
CviKI_1	RGCY	7 cut(s)	88, 109, 253, 290, 323, 521, 598
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	3 cut(s)	66, 260, 657
DpnII	GATC	3 cut(s)	64, 258, 655
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	386
Eco24I	GRGCYC	2 cut(s)	111, 255
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	253
EcoO109I	RGGNCCY	2 cut(s)	107, 108
EcoT14I	CCWWGG	1 cut(s)	386
EcoT38I	GRGCYC	2 cut(s)	111, 255
ErhI	CCWWGG	1 cut(s)	386
FaiI	YATR	6 cut(s)	123, 287, 459, 480, 538, 642
FaqI	GGGAC	2 cut(s)	134, 449
Fnu4HI	GCNGC	2 cut(s)	13, 519
FokI	GGATG	4 cut(s)	260, 323, 518, 568
FriOI	GRGCYC	2 cut(s)	111, 255
Fsp4HI	GCNGC	2 cut(s)	13, 519
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	2 cut(s)	13, 519
HaeIII	GGCC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	133, 169
HphI	GGTGA	2 cut(s)	83, 133
Hpy188I	TCNGA	5 cut(s)	99, 129, 229, 361, 552
Hpy188III	TCNNGA	2 cut(s)	256, 419
HpyAV	CCTTC	3 cut(s)	326, 436, 463
HpyCH4IV	ACGT	2 cut(s)	117, 664
HpyCH4V	TGCA	4 cut(s)	184, 464, 532, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	1 cut(s)	602
HpySE526I	ACGT	2 cut(s)	117, 664
Kzo9I	GATC	3 cut(s)	64, 258, 655
LmnI	GCTCC	3 cut(s)	85, 328, 475
LpnPI	CCDG	7 cut(s)	9, 157, 170, 173, 418, 488, 589
Lsp1109I	GCAGC	1 cut(s)	530
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	2 cut(s)	117, 664
MaeIII	GTNAC	3 cut(s)	453, 523, 574
MalI	GATC	3 cut(s)	66, 260, 657
MboI	GATC	3 cut(s)	64, 258, 655
MboII	GAAGA	7 cut(s)	53, 148, 156, 198, 245, 284, 521
MhlI	GDGCHC	2 cut(s)	111, 255
MluCI	AATT	2 cut(s)	59, 275
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	199
MseI	TTAA	3 cut(s)	306, 483, 593
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	532
MwoI	GCNNNNNNNGC	1 cut(s)	617
NdeII	GATC	3 cut(s)	64, 258, 655
NlaIV	GGNNCC	3 cut(s)	108, 109, 110
NmuCI	GTSAC	2 cut(s)	453, 574
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	14, 520
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	108, 109, 110
PspOMI	GGGCCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	107, 108
PstI	CTGCAG	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	306, 483, 593
SatI	GCNGC	2 cut(s)	13, 519
Sau3AI	GATC	3 cut(s)	64, 258, 655
Sau96I	GGNCC	2 cut(s)	107, 108
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	111, 255
SfcI	CTRYAG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	5 cut(s)	219, 254, 305, 350, 419
SmoI	CTYRAG	5 cut(s)	219, 254, 305, 350, 419
Sse9I	AATT	2 cut(s)	59, 275
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	386
TaiI	ACGT	2 cut(s)	120, 667
TaqI	TCGA	2 cut(s)	167, 558
TasI	AATT	2 cut(s)	59, 275
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	3 cut(s)	306, 483, 593
Tru9I	TTAA	3 cut(s)	306, 483, 593
TscAI	CASTG	3 cut(s)	151, 271, 534
TseFI	GTSAC	2 cut(s)	453, 574
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	2 cut(s)	453, 574
TspDTI	ATGAA	6 cut(s)	110, 204, 330, 345, 522, 525
TspRI	CASTG	3 cut(s)	151, 271, 534
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	59
XspI	CTAG	1 cut(s)	546
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.