Prupe.3G183500_v2.0.a1

snRNA-activating protein complex

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
19883555 .. 19889638
6084 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G183500.2

Sequence Viewer

Length: 1407 bp
ATGGCAGAGAATGACGGTGACAGTTGCAGTGTTGAAGACGAAGAACACACCAATAACAACAACAATGGTTGTGATAAGGAAGAGGAAGAACTCTCAGTTCCCAGAGGTGGGCCCATCTTCGTTCCCAATCTGGTGGGCTCCCTCACCAGTGTCCCTTTGTTCCAGTCTTCTATTGTTCAAGAACTTCAGGATTTAGAATTTGAAGTATCTTCAAGTTCATCCCAAGTCTTAGACGAAGATATTTCGGTGGATGAGCTCAAAATCTTGACTGAGGAAGAGTTGGTGGATATGGCTATCAAGGAAGCATTTAAGGACAATGAAGATTCCCCCAATCTTTCGCCTATTCCAGAAGAGCCTTCCGATGAAGGTAGATCAAAGGATCACGAGGCATCAAATGACGAAGCCTGTAAAAAGAAATCAAGGAAGAGAAAACGAACGAAGGCAAAGAATCATGATCTAGAGGAAACTTATATTGCAAAGGTGGAGCATGTTAGAAGAATCAAAGAGAAGCAAGATGAAGACAAAGCTGCTGTGACACTGCATTCGTTCAACCCTAGTTCGAAGGTCAATGATTGTGCCATTACATCCTCAAGGACAATTGATAGGATGAAACCCCTCAGATCTGCAAGTTCAGCAGTGAAGGTAAAGTCATCCAACATTCAGGGCTACGTACCTGTGCACTATCCAGAAGTTGCTCTTTCCATTGAGGTTTACCATAATGCGCGAAAATGGGTGAAGAACCAAGAGTTCTTGGTCCTTGGACAACAAACCTTGACCGAACTGAGGGATAAGATCTACTGCTTAGCGGACCATGTGATGCAAAAGGCTAAGCAGCATGACCCTTCAGGATATTTCCTTATAGAAGATACATTGTGCAACGATTTGAGGGATCCCTCAGCAGTAGATTATAGTGAACCTATATTTGATTGGCTTAGAAATTCTAAAGACGAAGCTCTTAAAAAATGGGAATGGATTGCAGCTGGAGGATTGCAAACGAAGCAAAAAGCAGTTGTAGGTGATGTTACGGGCTCACAGTTGCCTCATTTCAGAGCCGTTGACATGCACAAGACGCAGTTTTGTGACTTGAAATTTCGACTTGGTGCTGGATATCTATATTGTCACCAGGGAGACTGCAGACATACAATTGTAATTAGAGACATGAGATTGATTCATCCACAGGATGTACAAAACAGGGCAGCCTATCCGATACTCTTATTTCAACTGAAGCCACATATACGAAAATGTTATGTTTGTAAAATATTTAGAGCAACACAGGTGACTATAGATGACAAGTGGGCTCAGGAGAACCCCTGCTACTTCTGTGACAACTGCTATTACCTTCTTCACTACAAGGATGGTTGTTTGCTGTATGATGACTTTTCTGTACATGAGTATCGACATGATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

53.64

Weight (kDa)

5.45

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 724
AciI CCGC 1 cut(s) 806
AclWI GGATC 3 cut(s) 387, 884, 897
AcsI RAATTY 3 cut(s) 197, 937, 1088
AcuI CTGAAG 3 cut(s) 170, 828, 1244
AfaI GTAC 3 cut(s) 672, 1185, 1386
AfiI CCNNNNNNNGG 3 cut(s) 107, 108, 783
AgsI TTSAA 7 cut(s) 35, 179, 203, 213, 550, 1087, 1220
AjnI CCWGG 1 cut(s) 1122
AluBI AGCT 4 cut(s) 256, 527, 953, 980
AluI AGCT 4 cut(s) 256, 527, 953, 980
Alw21I GWGCWC 2 cut(s) 258, 681
Alw26I GTCTC 2 cut(s) 1122, 1149
Alw44I GTGCAC 1 cut(s) 677
AlwI GGATC 3 cut(s) 387, 884, 897
AoxI GGCC 1 cut(s) 110
ApaI GGGCCC 1 cut(s) 114
ApaLI GTGCAC 1 cut(s) 677
ApeKI GCWGC 4 cut(s) 527, 832, 977, 1196
ApoI RAATTY 3 cut(s) 197, 937, 1088
ArsI GACNNNNNNTTYG 2 cut(s) 526, 558
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 4 cut(s) 110, 111, 754, 808
AsuHPI GGTGA 6 cut(s) 29, 136, 745, 1028, 1112, 1288
AsuII TTCGAA 1 cut(s) 560
AvaII GGWCC 2 cut(s) 754, 808
BaeGI GKGCMC 2 cut(s) 114, 681
BaeI ACNNNNGTAYC 1 cut(s) 1376
BamHI GGATCC 1 cut(s) 889
BanII GRGCYC 5 cut(s) 114, 140, 258, 1031, 1300
BauI CACGAG 1 cut(s) 383
BbsI GAAGAC 3 cut(s) 42, 159, 525
Bbv12I GWGCWC 2 cut(s) 258, 681
BbvCI CCTCAGC 1 cut(s) 895
BbvI GCAGC 4 cut(s) 514, 844, 989, 1208
BccI CCATC 2 cut(s) 122, 1349
BceAI ACGGC 1 cut(s) 1037
BciT130I CCWGG 1 cut(s) 1124
BcoDI GTCTC 2 cut(s) 1122, 1149
BfaI CTAG 2 cut(s) 458, 555
BfmI CTRYAG 2 cut(s) 1132, 1281
BglII AGATCT 2 cut(s) 620, 792
BisI GCNGC 4 cut(s) 528, 833, 978, 1197
BlpI GCTNAGC 2 cut(s) 802, 828
BlsI GCNGC 4 cut(s) 529, 834, 979, 1198
Bme1390I CCNGG 1 cut(s) 1124
Bme18I GGWCC 2 cut(s) 754, 808
BmgT120I GGNCC 4 cut(s) 110, 111, 754, 808
BmiI GGNNCC 3 cut(s) 112, 139, 891
BmrFI CCNGG 1 cut(s) 1124
BmsI GCATC 2 cut(s) 398, 807
BpiI GAAGAC 3 cut(s) 42, 159, 525
BpmI CTGGAG 1 cut(s) 1002
Bpu10I CCTNAGC 2 cut(s) 895, 1299
Bpu1102I GCTNAGC 2 cut(s) 802, 828
Bpu14I TTCGAA 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 574
BsaAI YACGTR 1 cut(s) 670
BsaJI CCNNGG 2 cut(s) 757, 1123
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 108, 783
Bse1I ACTGG 2 cut(s) 147, 163
BseBI CCWGG 1 cut(s) 1124
BseDI CCNNGG 2 cut(s) 757, 1123
BseGI GGATG 8 cut(s) 218, 256, 584, 612, 650, 1171, 1186, 1360
BseLI CCNNNNNNNGG 3 cut(s) 107, 108, 783
BseMII CTCAG 6 cut(s) 108, 261, 631, 773, 909, 1313
BseNI ACTGG 2 cut(s) 147, 163
BseSI GKGCMC 2 cut(s) 114, 681
BseXI GCAGC 4 cut(s) 514, 844, 989, 1208
Bsh1236I CGCG 1 cut(s) 724
BshFI GGCC 1 cut(s) 112
BsiHKAI GWGCWC 2 cut(s) 258, 681
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 107, 108, 783
BsmAI GTCTC 2 cut(s) 1122, 1149
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 560
Bsp120I GGGCCC 1 cut(s) 110
Bsp1286I GDGCHC 6 cut(s) 114, 140, 258, 681, 1031, 1300
Bsp1407I TGTACA 2 cut(s) 1183, 1384
Bsp143I GATC 6 cut(s) 371, 379, 454, 620, 792, 889
Bsp1720I GCTNAGC 2 cut(s) 802, 828
BspACI CCGC 1 cut(s) 806
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 6 cut(s) 107, 262, 630, 774, 908, 1312
BspFNI CGCG 1 cut(s) 724
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 3 cut(s) 112, 139, 891
BspMAI CTGCAG 1 cut(s) 1136
BspPI GGATC 3 cut(s) 387, 884, 897
BspQI GCTCTTC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 560
BsrGI TGTACA 2 cut(s) 1183, 1384
BsrI ACTGG 2 cut(s) 147, 163
BssECI CCNNGG 2 cut(s) 757, 1123
BssMI GATC 6 cut(s) 371, 379, 454, 620, 792, 889
BssSI CACGAG 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 757
Bst2BI CACGAG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 1124
Bst4CI ACNGT 3 cut(s) 17, 23, 1035
Bst6I CTCTTC 4 cut(s) 75, 270, 345, 419
BstAUI TGTACA 2 cut(s) 1183, 1384
BstBAI YACGTR 1 cut(s) 670
BstBI TTCGAA 1 cut(s) 560
BstF5I GGATG 8 cut(s) 218, 256, 584, 612, 650, 1171, 1186, 1360
BstFNI CGCG 1 cut(s) 724
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 6 cut(s) 374, 382, 457, 623, 795, 892
BstMAI GTCTC 2 cut(s) 1122, 1149
BstMBI GATC 6 cut(s) 371, 379, 454, 620, 792, 889
BstMWI GCNNNNNNNGC 3 cut(s) 632, 997, 1069
BstNI CCWGG 1 cut(s) 1124
BstNSI RCATGY 2 cut(s) 491, 1063
BstSCI CCNGG 1 cut(s) 1122
BstSFI CTRYAG 2 cut(s) 1132, 1281
BstSLI GKGCMC 2 cut(s) 114, 681
BstSNI TACGTA 1 cut(s) 670
BstUI CGCG 1 cut(s) 724
BstV1I GCAGC 4 cut(s) 514, 844, 989, 1208
BstV2I GAAGAC 3 cut(s) 42, 159, 525
BstX2I RGATCY 3 cut(s) 620, 792, 889
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 3 cut(s) 620, 792, 889
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 8 cut(s) 218, 256, 584, 612, 650, 1171, 1186, 1360
BtsI GCAGTG 3 cut(s) 34, 536, 642
BtsIMutI CAGTG 4 cut(s) 34, 154, 536, 642
CciI TCATGA 1 cut(s) 451
CfoI GCGC 1 cut(s) 724
Cfr13I GGNCC 4 cut(s) 110, 111, 754, 808
CseI GACGC 1 cut(s) 1078
Csp6I GTAC 3 cut(s) 671, 1184, 1385
CviAII CATG 8 cut(s) 452, 488, 812, 836, 1060, 1159, 1388, 1400
CviQI GTAC 3 cut(s) 671, 1184, 1385
DpnI GATC 6 cut(s) 373, 381, 456, 622, 794, 891
DpnII GATC 6 cut(s) 371, 379, 454, 620, 792, 889
Eam1104I CTCTTC 4 cut(s) 75, 270, 345, 419
EarI CTCTTC 4 cut(s) 75, 270, 345, 419
Ecl136II GAGCTC 1 cut(s) 256
Eco105I TACGTA 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 757
Eco24I GRGCYC 5 cut(s) 114, 140, 258, 1031, 1300
Eco32I GATATC 1 cut(s) 1109
Eco47I GGWCC 2 cut(s) 754, 808
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 3 cut(s) 170, 828, 1244
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 1122
EcoRV GATATC 1 cut(s) 1109
EcoT14I CCWWGG 1 cut(s) 757
EcoT38I GRGCYC 5 cut(s) 114, 140, 258, 1031, 1300
ErhI CCWWGG 1 cut(s) 757
FaeI CATG 8 cut(s) 455, 491, 815, 839, 1063, 1162, 1391, 1403
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FaqI GGGAC 1 cut(s) 137
FatI CATG 8 cut(s) 451, 487, 811, 835, 1059, 1158, 1387, 1399
Fnu4HI GCNGC 4 cut(s) 528, 833, 978, 1197
FokI GGATG 8 cut(s) 205, 263, 571, 619, 637, 1158, 1193, 1367
FriOI GRGCYC 5 cut(s) 114, 140, 258, 1031, 1300
Fsp4HI GCNGC 4 cut(s) 528, 833, 978, 1197
FspBI CTAG 2 cut(s) 458, 555
GlaI GCGC 1 cut(s) 723
GluI GCNGC 4 cut(s) 528, 833, 978, 1197
GsuI CTGGAG 1 cut(s) 1002
HaeIII GGCC 1 cut(s) 112
HgaI GACGC 1 cut(s) 1078
HhaI GCGC 1 cut(s) 724
Hin1II CATG 8 cut(s) 455, 491, 815, 839, 1063, 1162, 1391, 1403
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HincII GTYRAC 1 cut(s) 1057
HindII GTYRAC 1 cut(s) 1057
HinfI GANTC 4 cut(s) 323, 448, 498, 1168
HphI GGTGA 6 cut(s) 29, 136, 745, 1028, 1112, 1288
Hpy166II GTNNAC 4 cut(s) 679, 712, 914, 1057
Hpy188I TCNGA 4 cut(s) 361, 620, 1049, 1206
Hpy8I GTNNAC 4 cut(s) 679, 712, 914, 1057
HpyAV CCTTC 7 cut(s) 359, 366, 433, 556, 634, 852, 1349
HpyCH4III ACNGT 3 cut(s) 17, 23, 1035
HpyCH4IV ACGT 1 cut(s) 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 632, 997, 1069
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 8 cut(s) 455, 491, 815, 839, 1063, 1162, 1391, 1403
HspAI GCGC 1 cut(s) 722
Kzo9I GATC 6 cut(s) 371, 379, 454, 620, 792, 889
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 143, 484
Lsp1109I GCAGC 4 cut(s) 514, 844, 989, 1208
LweI GCATC 2 cut(s) 398, 807
MaeI CTAG 2 cut(s) 458, 555
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 7 cut(s) 17, 532, 1021, 1079, 1118, 1276, 1322
MalI GATC 6 cut(s) 373, 381, 456, 622, 794, 891
MboI GATC 6 cut(s) 371, 379, 454, 620, 792, 889
MfeI CAATTG 2 cut(s) 597, 1143
MflI RGATCY 3 cut(s) 620, 792, 889
MhlI GDGCHC 6 cut(s) 114, 140, 258, 681, 1031, 1300
MluCI AATT 6 cut(s) 197, 597, 937, 1088, 1143, 1149
MmeI TCCRAC 1 cut(s) 678
MseI TTAA 3 cut(s) 309, 957, 1405
MspA1I CMGCKG 1 cut(s) 980
MspR9I CCNGG 1 cut(s) 1124
MunI CAATTG 2 cut(s) 597, 1143
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 1 cut(s) 1124
MvnI CGCG 1 cut(s) 724
MwoI GCNNNNNNNGC 3 cut(s) 632, 997, 1069
NdeII GATC 6 cut(s) 371, 379, 454, 620, 792, 889
NlaIII CATG 8 cut(s) 455, 491, 815, 839, 1063, 1162, 1391, 1403
NlaIV GGNNCC 3 cut(s) 112, 139, 891
NmuCI GTSAC 6 cut(s) 17, 532, 1079, 1118, 1276, 1322
NspI RCATGY 2 cut(s) 491, 1063
NspV TTCGAA 1 cut(s) 560
PagI TCATGA 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 345
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 4 cut(s) 323, 448, 498, 1168
PkrI GCNGC 4 cut(s) 529, 834, 979, 1198
Ppu21I YACGTR 1 cut(s) 670
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 1122
PspGI CCWGG 1 cut(s) 1122
PspN4I GGNNCC 3 cut(s) 112, 139, 891
PspOMI GGGCCC 1 cut(s) 110
PspPI GGNCC 4 cut(s) 110, 111, 754, 808
PsrI GAACNNNNNNTAC 2 cut(s) 1298, 1330
PstI CTGCAG 1 cut(s) 1136
PsuI RGATCY 3 cut(s) 620, 792, 889
PvuII CAGCTG 1 cut(s) 980
RsaI GTAC 3 cut(s) 672, 1185, 1386
RsaNI GTAC 3 cut(s) 671, 1184, 1385
SacI GAGCTC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 309, 957, 1405
SatI GCNGC 4 cut(s) 528, 833, 978, 1197
Sau3AI GATC 6 cut(s) 371, 379, 454, 620, 792, 889
Sau96I GGNCC 4 cut(s) 110, 111, 754, 808
ScrFI CCNGG 1 cut(s) 1124
SduI GDGCHC 6 cut(s) 114, 140, 258, 681, 1031, 1300
SfaNI GCATC 2 cut(s) 398, 807
SfcI CTRYAG 2 cut(s) 1132, 1281
SfuI TTCGAA 1 cut(s) 560
SinI GGWCC 2 cut(s) 754, 808
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SnaBI TACGTA 1 cut(s) 670
Sse9I AATT 6 cut(s) 197, 597, 937, 1088, 1143, 1149
SsiI CCGC 1 cut(s) 806
SspI AATATT 1 cut(s) 1260
SspMI CTAG 2 cut(s) 458, 555
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 1122
StyI CCWWGG 1 cut(s) 757
TaaI ACNGT 3 cut(s) 17, 23, 1035
TaiI ACGT 1 cut(s) 672
TaqI TCGA 3 cut(s) 560, 1093, 1396
TaqII GACCGA 1 cut(s) 791
TasI AATT 6 cut(s) 197, 597, 937, 1088, 1143, 1149
TatI WGTACW 2 cut(s) 1183, 1384
TfiI GAWTC 4 cut(s) 323, 448, 498, 1168
Tru1I TTAA 3 cut(s) 309, 957, 1405
Tru9I TTAA 3 cut(s) 309, 957, 1405
TscAI CASTG 4 cut(s) 34, 154, 543, 642
TseFI GTSAC 6 cut(s) 17, 532, 1079, 1118, 1276, 1322
TseI GCWGC 4 cut(s) 527, 832, 977, 1196
Tsp45I GTSAC 6 cut(s) 17, 532, 1079, 1118, 1276, 1322
TspDTI ATGAA 6 cut(s) 207, 333, 378, 531, 623, 1160
TspRI CASTG 4 cut(s) 34, 154, 543, 642
VneI GTGCAC 1 cut(s) 677
VpaK11BI GGWCC 2 cut(s) 754, 808
XapI RAATTY 3 cut(s) 197, 937, 1088
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 2 cut(s) 491, 1063
XspI CTAG 2 cut(s) 458, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.