Rmu_co8265699.1_g000001

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8265699.1
OG0002790
Physical Location & Seq
Forward (+)
1 .. 808
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8265699.1_g000001.1.cds

Sequence Viewer

Length: 228 bp
agaaatgatacggagaagaaggctttttggtcacaaattgcaaagaaggttgagtatattaaaaaaatcaaagaaaagcaggatgaggataaagcagctgtgacactacattcattcaaccgtagtttgaaaatcaagggtcgtgccagtgcatcctcagggacagctgaaaggatgaaacccctcagatctgcaagtgcagcagtgaaggtttgcatagataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

75

Amino Acids

8.41

Weight (kDa)

10.01

Isoelectric Point (pI)

24.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 118, 130
AluBI AGCT 2 cut(s) 98, 167
AluI AGCT 2 cut(s) 98, 167
ApeKI GCWGC 2 cut(s) 95, 200
AxyI CCTNAGG 1 cut(s) 157
BbvI GCAGC 2 cut(s) 107, 212
BglII AGATCT 1 cut(s) 188
BisI GCNGC 2 cut(s) 96, 201
BlsI GCNGC 2 cut(s) 97, 202
BmsI GCATC 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 147
Bse21I CCTNAGG 1 cut(s) 157
BseGI GGATG 3 cut(s) 88, 152, 180
BseMII CTCAG 2 cut(s) 171, 199
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 107, 212
BsgI GTGCAG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 188
BspCNI CTCAG 2 cut(s) 170, 198
BsrI ACTGG 1 cut(s) 147
BssMI GATC 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 157, 185
BstF5I GGATG 3 cut(s) 88, 152, 180
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 107, 212
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
Bsu36I CCTNAGG 1 cut(s) 157
BtsCI GGATG 3 cut(s) 88, 152, 180
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 154, 210
CviJI RGCY 3 cut(s) 23, 98, 167
CviKI_1 RGCY 3 cut(s) 23, 98, 167
DdeI CTNAG 2 cut(s) 157, 185
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 157
FaiI YATR 2 cut(s) 57, 218
FaqI GGGAC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 96, 201
FokI GGATG 3 cut(s) 95, 139, 187
Fsp4HI GCNGC 2 cut(s) 96, 201
GluI GCNGC 2 cut(s) 96, 201
Hpy188I TCNGA 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 13, 40, 202
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 5 cut(s) 41, 152, 194, 200, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 157, 185
Kzo9I GATC 1 cut(s) 188
LpnPI CCDG 3 cut(s) 65, 144, 160
Lsp1109I GCAGC 2 cut(s) 107, 212
LweI GCATC 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 30, 100
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 1 cut(s) 28
MflI RGATCY 1 cut(s) 188
MluCI AATT 2 cut(s) 36, 223
MnlI CCTC 3 cut(s) 79, 166, 194
MseI TTAA 1 cut(s) 60
MspA1I CMGCKG 2 cut(s) 98, 167
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 188
NmuCI GTSAC 2 cut(s) 30, 100
PkrI GCNGC 2 cut(s) 97, 202
PsuI RGATCY 1 cut(s) 188
PvuII CAGCTG 2 cut(s) 98, 167
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 96, 201
Sau3AI GATC 1 cut(s) 188
SetI ASST 4 cut(s) 51, 100, 169, 213
SfaNI GCATC 1 cut(s) 161
SgeI CNNG 6 cut(s) 92, 148, 155, 159, 171, 207
Sse9I AATT 2 cut(s) 36, 223
TaaI ACNGT 1 cut(s) 122
TasI AATT 2 cut(s) 36, 223
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 2 cut(s) 154, 210
TseFI GTSAC 2 cut(s) 30, 100
TseI GCWGC 2 cut(s) 95, 200
Tsp45I GTSAC 2 cut(s) 30, 100
TspDTI ATGAA 2 cut(s) 102, 191
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 2 cut(s) 154, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.