RLG00000001509

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002790
Physical Location & Seq
Reverse (-)
16609521 .. 16610654
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001509

Sequence Viewer

Length: 396 bp
ATGGCTATCAAGGAAGTACTTAAGGATGATGAAAAGGCTCCCAATGAAGGGGTAGCAGATGACCTTGAGACATCAGATGATAGAACTTGTAAAAAGAAACCAAGGAAAAGAAAAGAAAGGGAGACAAATGCTCTTGAGGACACTTACAGGGACAAGAAGGTTTTTTGGTCACATATTGCAAAGAAGGTGGAGCATATTAAGAAAATCAAAGAAAAGCAGGATGAAGATAAAGCAGCTGTTACACTGCATTCATACAACCCTAGTCTGAAAATCGAGGGTCCCCGTGCTGTCACATCATCCTCGAGAACAATTGAAAGGCTAAAGCCCCTCAGGTCTGCAAGTTCAGCAGTAAAGGACTTTGAAGTGTATGATTATCAGCACGATCAACCGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

132

Amino Acids

15.21

Weight (kDa)

9.06

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 391
AciI CCGC 1 cut(s) 389
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 47, 48
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 2 cut(s) 314, 362
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 62, 116
Ama87I CYCGRG 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 1 cut(s) 278
AxyI CCTNAGG 1 cut(s) 329
BbvI GCAGC 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 62, 116
BfaI CTAG 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmcAI AGTACT 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 3 cut(s) 39, 279, 280
BpuEI CTTGAG 2 cut(s) 86, 155
BsaJI CCNNGG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 48
Bse21I CCTNAGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 3 cut(s) 31, 226, 296
BseLI CCNNNNNNNGG 2 cut(s) 47, 48
BseMII CTCAG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 301
BslFI GGGAC 2 cut(s) 164, 264
BslI CCNNNNNNNGG 2 cut(s) 47, 48
BsmAI GTCTC 2 cut(s) 62, 116
BsmFI GGGAC 2 cut(s) 164, 264
BsmI GAATGC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 301
Bsp143I GATC 1 cut(s) 382
BspACI CCGC 1 cut(s) 389
BspCNI CTCAG 1 cut(s) 342
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 3 cut(s) 39, 279, 280
BspTI CTTAAG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 101
BstAFI CTTAAG 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 329
BstF5I GGATG 3 cut(s) 31, 226, 296
BstFNI CGCG 1 cut(s) 391
BstKTI GATC 1 cut(s) 385
BstMAI GTCTC 2 cut(s) 62, 116
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 245
Bsu36I CCTNAGG 1 cut(s) 329
BtsCI GGATG 3 cut(s) 31, 226, 296
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviJI RGCY 5 cut(s) 5, 38, 236, 319, 325
CviKI_1 RGCY 5 cut(s) 5, 38, 236, 319, 325
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 329
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 278
Eco81I CCTNAGG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaiI YATR 4 cut(s) 174, 195, 253, 369
FaqI GGGAC 2 cut(s) 164, 264
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 38, 233, 283
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 261
GluI GCNGC 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 76, 267
Hpy188III TCNNGA 2 cut(s) 134, 303
HpyAV CCTTC 3 cut(s) 41, 151, 178
HpyCH4V TGCA 3 cut(s) 179, 247, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 1 cut(s) 329
KflI GGGWCCC 1 cut(s) 278
Kzo9I GATC 1 cut(s) 382
LmnI GCTCC 2 cut(s) 43, 190
LpnPI CCDG 3 cut(s) 133, 203, 316
Lsp1109I GCAGC 1 cut(s) 245
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 3 cut(s) 168, 238, 289
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 1 cut(s) 236
MfeI CAATTG 1 cut(s) 309
MluCI AATT 1 cut(s) 309
MnlI CCTC 4 cut(s) 130, 268, 310, 338
MseI TTAA 2 cut(s) 21, 198
MspA1I CMGCKG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 20
MunI CAATTG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 247
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 344
NdeII GATC 1 cut(s) 382
NlaIV GGNNCC 3 cut(s) 39, 279, 280
NmuCI GTSAC 2 cut(s) 168, 289
PaeR7I CTCGAG 1 cut(s) 301
PctI GAATGC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 39, 279, 280
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 21, 198
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 1 cut(s) 382
Sau96I GGNCC 1 cut(s) 278
ScaI AGTACT 1 cut(s) 18
SetI ASST 5 cut(s) 66, 162, 189, 238, 335
Sfr274I CTCGAG 1 cut(s) 301
SinI GGWCC 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 301
SmlI CTYRAG 4 cut(s) 20, 65, 134, 301
SmoI CTYRAG 4 cut(s) 20, 65, 134, 301
Sse9I AATT 1 cut(s) 309
SsiI CCGC 1 cut(s) 389
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 101
TaqI TCGA 2 cut(s) 273, 302
TasI AATT 1 cut(s) 309
TatI WGTACW 1 cut(s) 16
Tru1I TTAA 2 cut(s) 21, 198
Tru9I TTAA 2 cut(s) 21, 198
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 2 cut(s) 168, 289
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 168, 289
TspDTI ATGAA 4 cut(s) 45, 60, 237, 240
TspRI CASTG 1 cut(s) 249
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 301
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.