Rh7CG427800

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002790
Physical Location & Seq
Forward (+)
55801281 .. 55802696
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG427800.1

Sequence Viewer

Length: 1416 bp
ATGGCAGAAGGCGGCAAAAATGCTGGTGTTGAATACCAAGAAGACACCAATGGCAAAAAATTTGATCGTGGTGAGGAGGAAGAGCTTTCAGTTCCGAGAGGGGGACCCCTCTACGTTCATAATCTGATGAGTCCAATCACCAGTGTCCCTTTCTTCCAGTCTTCGATTCTCCAACAACTGCAGGATTTAGAGGTAGAAGTATCTTCAGTTTCATCTCAAGTTTCTGACGAAGACATCTCGGTGGATGAGCTCAAGATCATCAGTGAGGAAGAATTAGTAGATATGGCTATCAAGGAAGTACTTAAGGATGATGAAAAAGCTCCCAATGAAGAGATAGCAGATGACCTTGAGACATCAGATGATAGAACTTGTAAAAAGAAACCAAGGAAAAGAAAAGAAAGGGAGACAAATGTTCTTGAGGACACTTACAGGGACAAGAAGGTTTTTTGGTCACATATTGCAAAGAAGGTGGAGCATATTAAGAAAATCAAAGAAAAACAGGATGAAGATAAAGCAGCTGTTACACTGCATTCATACAACCCTAGTCTGAAAATCGAGGGTCGCCGTGCTGTCACATCATCCTCAAGAACAATTGAAAGGTTAAAGCCCCTCAGGTCTGCAAGTTCAGCAGTAAAGGTAAAGTCATGCAGCAACAGTAGCATTCAGGACTACATACCTGTGCACCATCCAGAAGTTGCTCTTACAGTCGAGGTTTACCATAATGTGAAAATCTGGATCAAGACACAAGAATTCTTGGTACTAGGGAGACAAAGCTTAACTGAATTGAGGGATAAGATATACTGCTTAACAGACCATGCGATGCGAAAAGATCCATCAGGATATTTCCTCATTGAGGATACATTCTACAATGATTTGCGTGACCCCTCGGCATTAGACTACAGTGAGCCTATACTTGATTGGCTTACAAACTCAAGAGATAATGCTCTTCAAAAATGGGAATCCATTTTAGGTGGAGCTAACATGCAAAAGCAGAAAAAACTAGCAGTTGTTGACGGTATAAAAGGCTCACAATTGCCTCATTATAGAGTTATTGACATGCACAAGACAAAGTTTAGGGACTTGAAATTTCGACTTGGTGCTGGTTATCTGTATTGTCACCAGGGAGACTGCAGGCACACCATTGTAATTAGAGACATGCGATTGCTTCATCCGGAGGATGTACAGAACAGTGCAGTTTATCCGATACTCTTATTCCAACTGAAGCTACATGTACGAAAATGTAATGTTTGTAGGATATATAGAGCCACAAAGGTGACTGTAGATGACAAATATGCTCCGGAGAACCCTTGCTACTTCTGCGAGCAGTGCTATTACCTTCTTCACTATAAGGGTGATGGTTCGCTGCATTATCAGGACTTTGAAGTGTATGATTATCAGCACGATCAACCACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

471

Amino Acids

54.52

Weight (kDa)

6.13

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 249 - 465 3.3e-69 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 1171, 1297
AciI CCGC 1 cut(s) 12
AclWI GGATC 2 cut(s) 743, 824
AcsI RAATTY 3 cut(s) 59, 749, 1085
AcuI CTGAAG 2 cut(s) 189, 1241
AfaI GTAC 4 cut(s) 300, 759, 1182, 1233
AfiI CCNNNNNNNGG 2 cut(s) 101, 853
AflII CTTAAG 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 1228
AgsI TTSAA 5 cut(s) 32, 596, 950, 1084, 1382
AjnI CCWGG 1 cut(s) 1119
AleI CACNNNNGTG 1 cut(s) 1271
AluBI AGCT 7 cut(s) 85, 250, 320, 518, 774, 977, 1225
AluI AGCT 7 cut(s) 85, 250, 320, 518, 774, 977, 1225
Alw21I GWGCWC 2 cut(s) 252, 684
Alw26I GTCTC 5 cut(s) 344, 398, 760, 1119, 1146
Alw44I GTGCAC 1 cut(s) 680
AlwI GGATC 2 cut(s) 743, 824
Aor13HI TCCGGA 2 cut(s) 1171, 1297
ApaLI GTGCAC 1 cut(s) 680
ApeKI GCWGC 3 cut(s) 515, 648, 1363
ApoI RAATTY 3 cut(s) 59, 749, 1085
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 5 cut(s) 83, 130, 1109, 1285, 1364
AvaII GGWCC 1 cut(s) 104
AxyI CCTNAGG 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 684
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 3 cut(s) 48, 153, 237
Bbv12I GWGCWC 2 cut(s) 252, 684
BbvI GCAGC 3 cut(s) 527, 660, 1350
BccI CCATC 3 cut(s) 693, 841, 1349
BceAI ACGGC 1 cut(s) 549
BciT130I CCWGG 1 cut(s) 1121
BciVI GTATCC 1 cut(s) 850
BcoDI GTCTC 5 cut(s) 344, 398, 760, 1119, 1146
BfaI CTAG 3 cut(s) 543, 761, 1001
BfmI CTRYAG 4 cut(s) 179, 898, 1129, 1278
BfrI CTTAAG 1 cut(s) 302
BfuI GTATCC 1 cut(s) 850
BisI GCNGC 4 cut(s) 13, 516, 649, 1364
BlsI GCNGC 4 cut(s) 14, 517, 650, 1365
BmcAI AGTACT 1 cut(s) 300
Bme1390I CCNGG 1 cut(s) 1121
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 105, 106
BmrFI CCNGG 1 cut(s) 1121
BmsI GCATC 1 cut(s) 810
BpiI GAAGAC 3 cut(s) 48, 153, 237
BpuEI CTTGAG 6 cut(s) 201, 236, 368, 437, 568, 916
BsaJI CCNNGG 3 cut(s) 383, 885, 1120
BsaWI WCCGGW 2 cut(s) 1171, 1297
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 853
Bse1I ACTGG 2 cut(s) 141, 157
Bse21I CCTNAGG 1 cut(s) 611
BseAI TCCGGA 2 cut(s) 1171, 1297
BseBI CCWGG 1 cut(s) 1121
BseDI CCNNGG 3 cut(s) 383, 885, 1120
BseGI GGATG 7 cut(s) 250, 313, 508, 578, 685, 1168, 1183
BseLI CCNNNNNNNGG 2 cut(s) 101, 853
BseMII CTCAG 1 cut(s) 625
BseNI ACTGG 2 cut(s) 141, 157
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 3 cut(s) 527, 660, 1350
BsgI GTGCAG 1 cut(s) 1212
BsiHKAI GWGCWC 2 cut(s) 252, 684
BsiSI CCGG 2 cut(s) 1172, 1298
BslFI GGGAC 4 cut(s) 117, 131, 446, 1091
BslI CCNNNNNNNGG 2 cut(s) 101, 853
BsmAI GTCTC 5 cut(s) 344, 398, 760, 1119, 1146
BsmFI GGGAC 4 cut(s) 117, 131, 446, 1091
BsmI GAATGC 2 cut(s) 529, 660
Bsp1286I GDGCHC 2 cut(s) 252, 684
Bsp13I TCCGGA 2 cut(s) 1171, 1297
Bsp1407I TGTACA 1 cut(s) 1180
Bsp143I GATC 5 cut(s) 64, 255, 735, 829, 1402
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 624
BspEI TCCGGA 2 cut(s) 1171, 1297
BspLI GGNNCC 2 cut(s) 105, 106
BspMAI CTGCAG 2 cut(s) 183, 1133
BspPI GGATC 2 cut(s) 743, 824
BspQI GCTCTTC 2 cut(s) 75, 951
BspTI CTTAAG 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 1180
BsrI ACTGG 2 cut(s) 141, 157
BssECI CCNNGG 3 cut(s) 383, 885, 1120
BssMI GATC 5 cut(s) 64, 255, 735, 829, 1402
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 1121
Bst4CI ACNGT 6 cut(s) 656, 706, 902, 1016, 1190, 1279
Bst6I CTCTTC 3 cut(s) 75, 324, 951
BstAFI CTTAAG 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 1180
BstC8I GCNNGC 2 cut(s) 1133, 1322
BstDEI CTNAG 1 cut(s) 611
BstENI CCTNNNNNAGG 1 cut(s) 851
BstF5I GGATG 7 cut(s) 250, 313, 508, 578, 685, 1168, 1183
BstKTI GATC 5 cut(s) 67, 258, 738, 832, 1405
BstMAI GTCTC 5 cut(s) 344, 398, 760, 1119, 1146
BstMBI GATC 5 cut(s) 64, 255, 735, 829, 1402
BstMWI GCNNNNNNNGC 4 cut(s) 626, 657, 1317, 1326
BstNI CCWGG 1 cut(s) 1121
BstNSI RCATGY 4 cut(s) 985, 1060, 1159, 1232
BstSCI CCNGG 1 cut(s) 1119
BstSFI CTRYAG 4 cut(s) 179, 898, 1129, 1278
BstSLI GKGCMC 1 cut(s) 684
BstV1I GCAGC 3 cut(s) 527, 660, 1350
BstV2I GAAGAC 3 cut(s) 48, 153, 237
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
Bsu36I CCTNAGG 1 cut(s) 611
BsuI GTATCC 1 cut(s) 850
BtgZI GCGATG 1 cut(s) 833
BtsCI GGATG 7 cut(s) 250, 313, 508, 578, 685, 1168, 1183
BtsI GCAGTG 2 cut(s) 524, 1331
BtsIMutI CAGTG 6 cut(s) 148, 268, 524, 907, 1195, 1331
Cac8I GCNNGC 2 cut(s) 1133, 1322
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 4 cut(s) 299, 758, 1181, 1232
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 6 cut(s) 645, 815, 982, 1057, 1156, 1229
CviQI GTAC 4 cut(s) 299, 758, 1181, 1232
DdeI CTNAG 1 cut(s) 611
DpnI GATC 5 cut(s) 66, 257, 737, 831, 1404
DpnII GATC 5 cut(s) 64, 255, 735, 829, 1402
Eam1104I CTCTTC 3 cut(s) 75, 324, 951
EarI CTCTTC 3 cut(s) 75, 324, 951
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 2 cut(s) 189, 1241
Eco81I CCTNAGG 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 851
EcoO109I RGGNCCY 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 749
EcoRII CCWGG 1 cut(s) 1119
EcoT14I CCWWGG 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 6 cut(s) 648, 818, 985, 1060, 1159, 1232
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 4 cut(s) 117, 131, 446, 1091
FatI CATG 6 cut(s) 644, 814, 981, 1056, 1155, 1228
Fnu4HI GCNGC 4 cut(s) 13, 516, 649, 1364
FokI GGATG 7 cut(s) 257, 320, 515, 565, 672, 1155, 1190
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 4 cut(s) 13, 516, 649, 1364
FspBI CTAG 3 cut(s) 543, 761, 1001
GluI GCNGC 4 cut(s) 13, 516, 649, 1364
HapII CCGG 2 cut(s) 1172, 1298
Hin1II CATG 6 cut(s) 648, 818, 985, 1060, 1159, 1232
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HindIII AAGCTT 1 cut(s) 772
HinfI GANTC 3 cut(s) 130, 166, 959
HpaII CCGG 2 cut(s) 1172, 1298
HphI GGTGA 5 cut(s) 83, 130, 1109, 1285, 1364
Hpy166II GTNNAC 3 cut(s) 682, 715, 1012
Hpy188I TCNGA 6 cut(s) 96, 126, 226, 358, 549, 1203
Hpy8I GTNNAC 3 cut(s) 682, 715, 1012
HpyAV CCTTC 3 cut(s) 433, 460, 1346
HpyCH4III ACNGT 6 cut(s) 656, 706, 902, 1016, 1190, 1279
HpyCH4IV ACGT 2 cut(s) 114, 1411
HpyF10VI GCNNNNNNNGC 4 cut(s) 626, 657, 1317, 1326
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 2 cut(s) 114, 1411
Hsp92II CATG 6 cut(s) 648, 818, 985, 1060, 1159, 1232
KflI GGGWCCC 1 cut(s) 104
Kpn2I TCCGGA 2 cut(s) 1171, 1297
Kzo9I GATC 5 cut(s) 64, 255, 735, 829, 1402
LguI GCTCTTC 2 cut(s) 75, 951
LmnI GCTCC 4 cut(s) 325, 472, 974, 1300
Lsp1109I GCAGC 3 cut(s) 527, 660, 1350
LweI GCATC 1 cut(s) 810
MaeI CTAG 3 cut(s) 543, 761, 1001
MaeII ACGT 2 cut(s) 114, 1411
MaeIII GTNAC 6 cut(s) 450, 520, 571, 878, 1115, 1273
MalI GATC 5 cut(s) 66, 257, 737, 831, 1404
MboI GATC 5 cut(s) 64, 255, 735, 829, 1402
MfeI CAATTG 2 cut(s) 591, 1031
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 2 cut(s) 252, 684
MluCI AATT 8 cut(s) 59, 272, 591, 749, 782, 1031, 1085, 1146
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 196, 1240
MroI TCCGGA 2 cut(s) 1171, 1297
MseI TTAA 5 cut(s) 303, 480, 602, 776, 806
MslI CAYNNNNRTG 3 cut(s) 239, 677, 1271
MspA1I CMGCKG 1 cut(s) 518
MspCI CTTAAG 1 cut(s) 302
MspI CCGG 2 cut(s) 1172, 1298
MspR9I CCNGG 1 cut(s) 1121
MunI CAATTG 2 cut(s) 591, 1031
Mva1269I GAATGC 2 cut(s) 529, 660
MvaI CCWGG 1 cut(s) 1121
MwoI GCNNNNNNNGC 4 cut(s) 626, 657, 1317, 1326
NdeII GATC 5 cut(s) 64, 255, 735, 829, 1402
NlaIII CATG 6 cut(s) 648, 818, 985, 1060, 1159, 1232
NlaIV GGNNCC 2 cut(s) 105, 106
NmeAIII GCCGAG 1 cut(s) 866
NmuCI GTSAC 5 cut(s) 450, 571, 878, 1115, 1273
NspI RCATGY 4 cut(s) 985, 1060, 1159, 1232
OliI CACNNNNGTG 1 cut(s) 1271
PciI ACATGT 1 cut(s) 1228
PciSI GCTCTTC 2 cut(s) 75, 951
PctI GAATGC 2 cut(s) 529, 660
PfeI GAWTC 2 cut(s) 166, 959
PkrI GCNGC 4 cut(s) 14, 517, 650, 1365
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 104
PscI ACATGT 1 cut(s) 1228
Psp124BI GAGCTC 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 1119
PspGI CCWGG 1 cut(s) 1119
PspN4I GGNNCC 2 cut(s) 105, 106
PspPI GGNCC 1 cut(s) 104
PspPPI RGGWCCY 1 cut(s) 104
PsrI GAACNNNNNNTAC 2 cut(s) 1295, 1327
PstI CTGCAG 2 cut(s) 183, 1133
PsuI RGATCY 1 cut(s) 829
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 4 cut(s) 300, 759, 1182, 1233
RsaNI GTAC 4 cut(s) 299, 758, 1181, 1232
RseI CAYNNNNRTG 3 cut(s) 239, 677, 1271
SacI GAGCTC 1 cut(s) 252
SapI GCTCTTC 2 cut(s) 75, 951
SaqAI TTAA 5 cut(s) 303, 480, 602, 776, 806
SatI GCNGC 4 cut(s) 13, 516, 649, 1364
Sau3AI GATC 5 cut(s) 64, 255, 735, 829, 1402
Sau96I GGNCC 1 cut(s) 104
ScaI AGTACT 1 cut(s) 300
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 1121
SduI GDGCHC 2 cut(s) 252, 684
SfaNI GCATC 1 cut(s) 810
SfcI CTRYAG 4 cut(s) 179, 898, 1129, 1278
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 3 cut(s) 239, 677, 1271
SmlI CTYRAG 7 cut(s) 216, 251, 302, 347, 416, 583, 931
SmoI CTYRAG 7 cut(s) 216, 251, 302, 347, 416, 583, 931
Sse9I AATT 8 cut(s) 59, 272, 591, 749, 782, 1031, 1085, 1146
SsiI CCGC 1 cut(s) 12
SspMI CTAG 3 cut(s) 543, 761, 1001
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 1119
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 6 cut(s) 656, 706, 902, 1016, 1190, 1279
TaiI ACGT 2 cut(s) 117, 1414
TaqI TCGA 4 cut(s) 164, 555, 708, 1090
TasI AATT 8 cut(s) 59, 272, 591, 749, 782, 1031, 1085, 1146
TatI WGTACW 2 cut(s) 298, 1180
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 166, 959
Tru1I TTAA 5 cut(s) 303, 480, 602, 776, 806
Tru9I TTAA 5 cut(s) 303, 480, 602, 776, 806
TscAI CASTG 6 cut(s) 148, 268, 531, 907, 1195, 1331
TseFI GTSAC 5 cut(s) 450, 571, 878, 1115, 1273
TseI GCWGC 3 cut(s) 515, 648, 1363
Tsp45I GTSAC 5 cut(s) 450, 571, 878, 1115, 1273
TspDTI ATGAA 7 cut(s) 107, 201, 327, 342, 519, 522, 1157
TspRI CASTG 6 cut(s) 148, 268, 531, 907, 1195, 1331
Vha464I CTTAAG 1 cut(s) 302
VneI GTGCAC 1 cut(s) 680
VpaK11BI GGWCC 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 851
XapI RAATTY 3 cut(s) 59, 749, 1085
XceI RCATGY 4 cut(s) 985, 1060, 1159, 1232
XspI CTAG 3 cut(s) 543, 761, 1001
ZrmI AGTACT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.