Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002790

Physical Location & Seq

Genomic Coordinates Forward (+)

31901883 .. 31902480

Gene Structure 598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24389

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGATTAGAGACATAAGGTTGCTTCATCCAGAGGAGATACAGAATAGGGCAGCTTATCAATTACTCTTATTCCAATTGAAGCTACACGTACAGAAATATAAAGTGTGTCGGATGTATAGTGCAACAAAGTTGACTGTCAATGACAATTGGATTGCGGAGAATCCCTGCTACTTCTCCGATAATTGCTACTTCCGTATCAATGTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-SNAP50_C

Protein Analysis

69

Amino Acids

8.37

Weight (kDa)

8.91

Isoelectric Point (pI)

14.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAPC3	PF12251	1 - 67	6e-14	snRNA-activating protein complex (SNAPc), subunit 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28560 AT1G28560 AT1G28560
fragaria_vesca	FvH4_6g39210
malus_domestica	MD17G1131000.v1.1
prunus_persica	Prupe.3G183500_v2.0.a1 Prupe.3G183500_v2.0.a1 Prupe.3G183500_v2.0.a1
pyrus_communis	pycom16g05160 pycom16g05170 pycom17g12360
rosa_chinensis	RchiOBHm_Chr2g0153021 RchiOBHm_Chr6g0271881 RchiOBHm_Chr6g0271891 RchiOBHm_Chr6g0271991 RchiOBHm_Chr7g0217251 RchiOBHm_Chr7g0230211
rosa_laevigata	RLG00000001509
rosa_multiflora	Rmu_co8265699.1_g000001 Rmu_sc0002822.1_g000021 Rmu_sc0004110.1_g000009
rosa_roxburghii	Rroxscaffold_2G00095280
rosa_rugosa	Rorug02G0436800 Rorug07G0260000
rosa_samantha	Rh2BG510300 Rh2CG485300 Rh2DG521800 Rh6BG185300 Rh7AG298300 Rh7AG306600 Rh7AG409100 Rh7BG286500 Rh7BG388900 Rh7CG325600 Rh7CG427800 Rh7DG406900
rosa_wichuraiana	Rw0G018570 Rw0G022600 Rw2G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AfaI	GTAC	1 cut(s)	90
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	2 cut(s)	53, 82
AluI	AGCT	2 cut(s)	53, 82
Alw26I	GTCTC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	50
BaeI	ACNNNNGTAYC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	3
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	88
BseGI	GGATG	2 cut(s)	25, 117
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	25, 117
BstMAI	GTCTC	1 cut(s)	3
BstV1I	GCAGC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	25, 117
Csp6I	GTAC	1 cut(s)	89
CviJI	RGCY	2 cut(s)	53, 82
CviKI_1	RGCY	2 cut(s)	53, 82
CviQI	GTAC	1 cut(s)	89
FaiI	YATR	3 cut(s)	14, 99, 117
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	12, 124
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	3 cut(s)	111, 178, 209
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	87
LpnPI	CCDG	2 cut(s)	42, 178
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	87
MfeI	CAATTG	2 cut(s)	74, 145
MluCI	AATT	4 cut(s)	59, 74, 145, 181
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	1 cut(s)	25
MunI	CAATTG	2 cut(s)	74, 145
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	88
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SatI	GCNGC	1 cut(s)	51
SetI	ASST	4 cut(s)	20, 55, 84, 90
SgeI	CNNG	3 cut(s)	41, 98, 177
Sse9I	AATT	4 cut(s)	59, 74, 145, 181
SsiI	CCGC	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	90
TasI	AATT	4 cut(s)	59, 74, 145, 181
TfiI	GAWTC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.