RchiOBHm_Chr6g0271991

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002790
Physical Location & Seq
Forward (+)
32031745 .. 32037709
5965 bp
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UTR
Exon/CDS
Intron
PRQ24398

Sequence Viewer

Length: 315 bp
ATGCATTTTAAATTCTATTTGACTGCCTTAGGTCAATTTCTTATAGAATCTGTCAGTTTGTCAATAAACCAATCCCCCCCCTCCAGGGTGGTCGAGGTGACTATAGACACAGTTGTAATTAGAGACATAAGGTTGCTTCATCCAGAGGATATACAGAACAGGGCAGCTTATCAATTACTCTTATACCAATTGAAGCTACACGTACAGAAATATAAAGTGTGTCAGATGTATAGTGCAACAAAGTTGACTGTCAATGACAATTGGATTGCGGAGAATCCCTGCTACTTCTCCGATAATTGCTACTTATCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

104

Amino Acids

12.15

Weight (kDa)

6.81

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 38 - 103 1.9e-14 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 84, 85
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 2 cut(s) 167, 196
AluI AGCT 2 cut(s) 167, 196
Alw26I GTCTC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 109
AxyI CCTNAGG 1 cut(s) 28
BbvI GCAGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 85
Bse21I CCTNAGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 84, 85
BseXI GCAGC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 84, 85
BsmAI GTCTC 1 cut(s) 117
BspACI CCGC 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 112, 250
BstBAI YACGTR 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 176
Bsu36I CCTNAGG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 139
Csp6I GTAC 1 cut(s) 203
CviJI RGCY 2 cut(s) 167, 196
CviKI_1 RGCY 2 cut(s) 167, 196
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 28
DraI TTTAAA 1 cut(s) 10
Eco81I CCTNAGG 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 7 cut(s) 44, 104, 128, 152, 184, 213, 231
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 67
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 2 cut(s) 47, 274
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 2 cut(s) 225, 292
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 246
HpyCH4III ACNGT 2 cut(s) 112, 250
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 4, 236
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 1 cut(s) 201
LpnPI CCDG 5 cut(s) 70, 97, 145, 156, 292
Lsp1109I GCAGC 1 cut(s) 176
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 97
MfeI CAATTG 2 cut(s) 188, 259
MluCI AATT 7 cut(s) 11, 35, 117, 173, 188, 259, 295
MnlI CCTC 3 cut(s) 88, 91, 139
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 85
MunI CAATTG 2 cut(s) 188, 259
MvaI CCWGG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 2 cut(s) 47, 274
PkrI GCNGC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 85
SetI ASST 6 cut(s) 34, 99, 134, 169, 198, 204
SfcI CTRYAG 1 cut(s) 102
SgeI CNNG 7 cut(s) 96, 97, 106, 155, 172, 212, 291
Sse9I AATT 7 cut(s) 11, 35, 117, 173, 188, 259, 295
SsiI CCGC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 112, 250
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 93
TasI AATT 7 cut(s) 11, 35, 117, 173, 188, 259, 295
TfiI GAWTC 2 cut(s) 47, 274
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 128
XapI RAATTY 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.