Rroxscaffold_2G00095280

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002790
Physical Location & Seq
Forward (+)
16679976 .. 16687469
7494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095280.1

Sequence Viewer

Length: 1926 bp
ATGTCGTGTATACAAACTATTGCGGGCAATATTGCAGACGCTTCCCTGCGGCTGAGCGCCAAAAACACCCGTACTCCCTCGACGCCGAAATCACACCTCTCCAACTCTCTCTCTTCACTCCTTCCTTCTCCTCACAGATTGATGGAAGGCTATGTTGAAGACGCTAATGGCTTTGCTCACGGTTCCGAGGAGGTGGAGGAGCTCACGGTTCCGAGAGGTGGGCCCCTCTACGTTGAGAATCTGACCGGTCCTCTCACCAGTGTCGGTCTCTTCCAGTCTTCTGTTCTCCAAGAGCTTCAGGATTTGGAGGTGGAATTGGCTTCGGGTTCTTCCCAAGTCTGCGGCGAAGAAGATATCTCGGTGGATGAGCTTAAGATCATGAGTGAGGAGGAGTTGGTGGATATGGCTATTAAGGAAGTACTTAAGGACGATGAATGTGTTCCCAAATCTTCGCCTGTTTCAGAAGAGCCCTCCGATGAAGGGAGAGGAGACAATCTTGAGACATCAAATGAAAAATATTATATAACGTATTCAAGGAGAAGAAGAAGAATATTGAAGGACGACGAAGGTGCTCTAAATGTTTTGCCGATTTCAGAAAAGCCTCTCAAGGAAAGGAGACCAGATGATCCTCATAAATCAGAACTTAGATCATGCAAAGGAAAAGAAGTGAAGACAAATTATCTTGCGATTAAGGATGATGAAGATGCCCCCAATCTTTTGTCTATTCCGGAAGAGCCCTTTAATGAAAGGAGAGCAGATGATCCTGACACGTCAAATCATAAAATTTGTGTAAGGAAATCAAGGAAGAGAAAAGGTATGAAGGCAAATAGTCATTCTCTTGAGAGAAATGATACGGAGAAGAAGGCTTTTTGGTCACAAATTGCAAAGAAGGTTGAGTATATTAAAAAAATCAAAGAAAAGCAGGATGAGGATAAAGCAGCTGTGACGCTACATTCATTCAACCGTAGTTTGAAAATCAAGGGTCGTGCCAGTGCATCCTCAGGGACAGCTGAAAGGATGAAACCCCTCAGATCTGCAAGTGCAGCAGTGAAGGTAAAGTTATCCAGCATTCAGGGTTGCATACCTGTACGCCATCCAGAAGTTGCTCTTTCAATTGAGGTTTATCATAATGTCCGAAACTGGGTCAAGATTGCACTATTGACTTCCCATACAGAGATTGCAAATCATGGTATCTGTAATTCTGATGGAAAGCTTTCTGGTGTAAATCCTCTTTTTCAATTTGGAACCCAAGAATTCTTGGTCCTAGGACAACAAACCTTGACTGAGTTGAGGGATAAGATATATTGCTTAACAGACAAGGTGATGGAGACAGATGGCCAGCATAATCATTCAGGATATTTCCTCATAGAAGATACATTCTACAACGATCTGAGGGATCCTTCTGCAATAGATTATAGTGAACCAATATTTGATTGGCTTAGAAATTCAAAAGATGATGCTTTAAAAAAATGGGAGTGTATTTTAGCTGGAAAAATGCAAAAGCACAAAAAAGCAGTTGTAGGCGACATAACTGGCTCAAAATTGCCTCGTTTCCAAGCTGCTAATATGCACAAGACACAGTTTTGCAACTTGAAATTTCAACTTGGTGCTGGATATCTATACTGTCACCAGGGTGACTGCAGACACACAGTTGTGATTAGAGACATGCGGTTGCTTCATCCAGAGGATATACAAAACAGGGCAGCTTATCCAATACTCTTATTCCAGTTGAAGCTACATGTACAGAAATGTAAAGTGTGTAGGATATATAGAGCTACAAAGATGACTGTCAATGACAAATGGACTCCGGAGAATCCCTGCTACTTTTGCGATAATTGCTACTTCCTTCTTCACTATACGAAAGATGGTTCTCTTCAGTATCAGGACTTCGAAGTGCATGATTATCACCATGATCAACCGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

641

Amino Acids

72.76

Weight (kDa)

6.66

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 417 - 635 3.4e-70 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 10
AccII CGCG 1 cut(s) 1921
AccIII TCCGGA 2 cut(s) 727, 1807
AciI CCGC 5 cut(s) 23, 49, 342, 1669, 1919
AclWI GGATC 4 cut(s) 620, 755, 1391, 1404
AcoI YGGCCR 1 cut(s) 1336
AcsI RAATTY 4 cut(s) 783, 1253, 1444, 1595
AcuI CTGAAG 2 cut(s) 281, 1859
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 4 cut(s) 73, 420, 1089, 1743
AfiI CCNNNNNNNGG 3 cut(s) 218, 480, 1141
AflII CTTAAG 2 cut(s) 371, 422
AflIII ACRYGT 2 cut(s) 768, 1738
AgeI ACCGGT 1 cut(s) 245
AjiI CACGTC 1 cut(s) 771
AjnI CCWGG 1 cut(s) 1629
AleI CACNNNNGTG 2 cut(s) 1632, 1652
Alw21I GWGCWC 2 cut(s) 204, 574
Alw26I GTCTC 6 cut(s) 272, 483, 494, 610, 1322, 1656
AlwI GGATC 4 cut(s) 620, 755, 1391, 1404
Aor13HI TCCGGA 2 cut(s) 727, 1807
AoxI GGCC 2 cut(s) 221, 1336
ApaI GGGCCC 1 cut(s) 225
ApeKI GCWGC 4 cut(s) 938, 1043, 1559, 1703
ApoI RAATTY 4 cut(s) 783, 1253, 1444, 1595
AsiGI ACCGGT 1 cut(s) 245
Asp700I GAANNNNTTC 2 cut(s) 438, 1213
AspA2I CCTAGG 1 cut(s) 1264
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 4 cut(s) 221, 222, 248, 1261
AsuHPI GGTGA 5 cut(s) 247, 1333, 1619, 1646, 1898
AsuII TTCGAA 1 cut(s) 1890
AvaII GGWCC 2 cut(s) 248, 1261
AvrII CCTAGG 1 cut(s) 1264
AxyI CCTNAGG 1 cut(s) 1000
BaeGI GKGCMC 1 cut(s) 225
BalI TGGCCA 1 cut(s) 1338
BamHI GGATCC 1 cut(s) 1396
BanII GRGCYC 4 cut(s) 204, 225, 471, 738
BarI GAAGNNNNNNTAC 2 cut(s) 1871, 1903
BbsI GAAGAC 3 cut(s) 165, 270, 677
Bbv12I GWGCWC 2 cut(s) 204, 574
BbvI GCAGC 4 cut(s) 950, 1055, 1546, 1715
BccI CCATC 6 cut(s) 136, 1101, 1199, 1318, 1328, 1859
BcgI CGANNNNNNTGC 2 cut(s) 551, 585
BciT130I CCWGG 1 cut(s) 1631
BclI TGATCA 1 cut(s) 1912
BcoDI GTCTC 6 cut(s) 272, 483, 494, 610, 1322, 1656
BfaI CTAG 1 cut(s) 1265
BfmI CTRYAG 1 cut(s) 1639
BfoI RGCGCY 1 cut(s) 60
BfrI CTTAAG 2 cut(s) 371, 422
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 6 cut(s) 50, 343, 939, 1044, 1560, 1704
BlnI CCTAGG 1 cut(s) 1264
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 6 cut(s) 51, 344, 940, 1045, 1561, 1705
BmcAI AGTACT 1 cut(s) 420
Bme1390I CCNGG 1 cut(s) 1631
Bme18I GGWCC 2 cut(s) 248, 1261
BmgBI CACGTC 1 cut(s) 771
BmgT120I GGNCC 4 cut(s) 221, 222, 248, 1261
BmiI GGNNCC 6 cut(s) 184, 210, 223, 224, 1246, 1398
BmrFI CCNGG 1 cut(s) 1631
BmrI ACTGGG 1 cut(s) 1150
BmsI GCATC 3 cut(s) 694, 1004, 1447
BmuI ACTGGG 1 cut(s) 1150
BpiI GAAGAC 3 cut(s) 165, 270, 677
Bpu1102I GCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 1890
BpuEI CTTGAG 3 cut(s) 518, 590, 860
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 2 cut(s) 272, 610
BsaJI CCNNGG 3 cut(s) 186, 1264, 1630
BsaWI WCCGGW 3 cut(s) 245, 727, 1807
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 480, 1141
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 6 cut(s) 258, 274, 990, 1145, 1537, 1726
Bse21I CCTNAGG 1 cut(s) 1000
BseAI TCCGGA 2 cut(s) 727, 1807
BseBI CCWGG 1 cut(s) 1631
BseDI CCNNGG 3 cut(s) 186, 1264, 1630
BseGI GGATG 7 cut(s) 370, 700, 931, 995, 1023, 1093, 1678
BseLI CCNNNNNNNGG 3 cut(s) 218, 480, 1141
BseMII CTCAG 5 cut(s) 44, 1014, 1042, 1275, 1382
BseNI ACTGG 6 cut(s) 258, 274, 990, 1145, 1537, 1726
BseRI GAGGAG 6 cut(s) 120, 203, 212, 401, 404, 501
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 4 cut(s) 950, 1055, 1546, 1715
BsgI GTGCAG 1 cut(s) 1062
Bsh1236I CGCG 1 cut(s) 1921
BshFI GGCC 2 cut(s) 223, 1338
BshTI ACCGGT 1 cut(s) 245
BsiHKAI GWGCWC 2 cut(s) 204, 574
BsiSI CCGG 3 cut(s) 246, 728, 1808
BslFI GGGAC 1 cut(s) 1018
BslI CCNNNNNNNGG 3 cut(s) 218, 480, 1141
BsmAI GTCTC 6 cut(s) 272, 483, 494, 610, 1322, 1656
BsmFI GGGAC 1 cut(s) 1018
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 2 cut(s) 223, 1338
Bso31I GGTCTC 2 cut(s) 272, 610
Bsp119I TTCGAA 1 cut(s) 1890
Bsp120I GGGCCC 1 cut(s) 221
Bsp1286I GDGCHC 5 cut(s) 204, 225, 471, 574, 738
Bsp13I TCCGGA 2 cut(s) 727, 1807
Bsp1407I TGTACA 1 cut(s) 1741
Bsp143I GATC 8 cut(s) 375, 625, 647, 760, 1031, 1387, 1396, 1912
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 5 cut(s) 23, 49, 342, 1669, 1919
BspANI GGCC 2 cut(s) 223, 1338
BspCNI CTCAG 5 cut(s) 45, 1013, 1041, 1276, 1383
BspEI TCCGGA 2 cut(s) 727, 1807
BspFNI CGCG 1 cut(s) 1921
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 6 cut(s) 184, 210, 223, 224, 1246, 1398
BspMAI CTGCAG 1 cut(s) 1643
BspPI GGATC 4 cut(s) 620, 755, 1391, 1404
BspQI GCTCTTC 2 cut(s) 459, 726
BspT104I TTCGAA 1 cut(s) 1890
BspTI CTTAAG 2 cut(s) 371, 422
BspTNI GGTCTC 2 cut(s) 272, 610
BsrFI RCCGGY 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 1741
BsrI ACTGG 6 cut(s) 258, 274, 990, 1145, 1537, 1726
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 3 cut(s) 186, 1264, 1630
BssMI GATC 8 cut(s) 375, 625, 647, 760, 1031, 1387, 1396, 1912
BssNAI GTATAC 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 1264
Bst1107I GTATAC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 1631
Bst4CI ACNGT 7 cut(s) 182, 208, 965, 1581, 1625, 1651, 1789
Bst6I CTCTTC 6 cut(s) 118, 275, 459, 726, 800, 1878
BstACI GRCGYC 1 cut(s) 83
BstAFI CTTAAG 2 cut(s) 371, 422
BstAUI TGTACA 1 cut(s) 1741
BstBI TTCGAA 1 cut(s) 1890
BstC8I GCNNGC 2 cut(s) 25, 1340
BstDEI CTNAG 7 cut(s) 53, 644, 1000, 1028, 1284, 1391, 1439
BstF5I GGATG 7 cut(s) 370, 700, 931, 995, 1023, 1093, 1678
BstFNI CGCG 1 cut(s) 1921
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 8 cut(s) 378, 628, 650, 763, 1034, 1390, 1399, 1915
BstMAI GTCTC 6 cut(s) 272, 483, 494, 610, 1322, 1656
BstMBI GATC 8 cut(s) 375, 625, 647, 760, 1031, 1387, 1396, 1912
BstMWI GCNNNNNNNGC 3 cut(s) 1043, 1827, 1836
BstNI CCWGG 1 cut(s) 1631
BstNSI RCATGY 2 cut(s) 1669, 1742
BstSCI CCNGG 1 cut(s) 1629
BstSFI CTRYAG 1 cut(s) 1639
BstSLI GKGCMC 1 cut(s) 225
BstUI CGCG 1 cut(s) 1921
BstV1I GCAGC 4 cut(s) 950, 1055, 1546, 1715
BstV2I GAAGAC 3 cut(s) 165, 270, 677
BstX2I RGATCY 2 cut(s) 1031, 1396
BstYI RGATCY 2 cut(s) 1031, 1396
BstZ17I GTATAC 1 cut(s) 11
Bsu36I CCTNAGG 1 cut(s) 1000
BsuRI GGCC 2 cut(s) 223, 1338
BtrI CACGTC 1 cut(s) 771
BtsCI GGATG 7 cut(s) 370, 700, 931, 995, 1023, 1093, 1678
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 3 cut(s) 265, 997, 1053
Cac8I GCNNGC 2 cut(s) 25, 1340
CciI TCATGA 1 cut(s) 378
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 4 cut(s) 221, 222, 248, 1261
CseI GACGC 4 cut(s) 47, 91, 170, 955
Csp6I GTAC 4 cut(s) 72, 419, 1088, 1742
CspAI ACCGGT 1 cut(s) 245
CviAII CATG 7 cut(s) 379, 651, 1187, 1666, 1739, 1898, 1910
CviQI GTAC 4 cut(s) 72, 419, 1088, 1742
DdeI CTNAG 7 cut(s) 53, 644, 1000, 1028, 1284, 1391, 1439
DpnI GATC 8 cut(s) 377, 627, 649, 762, 1033, 1389, 1398, 1914
DpnII GATC 8 cut(s) 375, 625, 647, 760, 1031, 1387, 1396, 1912
DraI TTTAAA 1 cut(s) 1464
EaeI YGGCCR 1 cut(s) 1336
Eam1104I CTCTTC 6 cut(s) 118, 275, 459, 726, 800, 1878
EarI CTCTTC 6 cut(s) 118, 275, 459, 726, 800, 1878
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 1264
Eco24I GRGCYC 4 cut(s) 204, 225, 471, 738
Eco31I GGTCTC 2 cut(s) 272, 610
Eco32I GATATC 2 cut(s) 355, 1616
Eco47I GGWCC 2 cut(s) 248, 1261
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 281, 1859
Eco81I CCTNAGG 1 cut(s) 1000
EcoICRI GAGCTC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 1253
EcoRII CCWGG 1 cut(s) 1629
EcoRV GATATC 2 cut(s) 355, 1616
EcoT14I CCWWGG 1 cut(s) 1264
EcoT38I GRGCYC 4 cut(s) 204, 225, 471, 738
ErhI CCWWGG 1 cut(s) 1264
FaeI CATG 7 cut(s) 382, 654, 1190, 1669, 1742, 1901, 1913
FalI AAGNNNNNCTT 2 cut(s) 1092, 1124
FaqI GGGAC 1 cut(s) 1018
FatI CATG 7 cut(s) 378, 650, 1186, 1665, 1738, 1897, 1909
FauI CCCGC 1 cut(s) 16
FbaI TGATCA 1 cut(s) 1912
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 6 cut(s) 50, 343, 939, 1044, 1560, 1704
FokI GGATG 7 cut(s) 377, 707, 938, 982, 1030, 1080, 1665
FriOI GRGCYC 4 cut(s) 204, 225, 471, 738
Fsp4HI GCNGC 6 cut(s) 50, 343, 939, 1044, 1560, 1704
FspBI CTAG 1 cut(s) 1265
GlaI GCGC 1 cut(s) 58
GluI GCNGC 6 cut(s) 50, 343, 939, 1044, 1560, 1704
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 2 cut(s) 223, 1338
HapII CCGG 3 cut(s) 246, 728, 1808
HgaI GACGC 4 cut(s) 47, 91, 170, 955
HhaI GCGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 7 cut(s) 382, 654, 1190, 1669, 1742, 1901, 1913
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 1211
HinfI GANTC 3 cut(s) 238, 1804, 1813
HpaII CCGG 3 cut(s) 246, 728, 1808
HphI GGTGA 5 cut(s) 247, 1333, 1619, 1646, 1898
Hpy166II GTNNAC 2 cut(s) 11, 1421
Hpy8I GTNNAC 2 cut(s) 11, 1421
Hpy99I CGWCG 2 cut(s) 85, 566
HpyCH4III ACNGT 7 cut(s) 182, 208, 965, 1581, 1625, 1651, 1789
HpyCH4IV ACGT 3 cut(s) 231, 527, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 1043, 1827, 1836
HpyF3I CTNAG 7 cut(s) 53, 644, 1000, 1028, 1284, 1391, 1439
HpySE526I ACGT 3 cut(s) 231, 527, 770
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 7 cut(s) 382, 654, 1190, 1669, 1742, 1901, 1913
HspAI GCGC 1 cut(s) 57
Kpn2I TCCGGA 2 cut(s) 727, 1807
Ksp22I TGATCA 1 cut(s) 1912
Kzo9I GATC 8 cut(s) 375, 625, 647, 760, 1031, 1387, 1396, 1912
LguI GCTCTTC 2 cut(s) 459, 726
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 4 cut(s) 950, 1055, 1546, 1715
LweI GCATC 3 cut(s) 694, 1004, 1447
MaeI CTAG 1 cut(s) 1265
MaeII ACGT 3 cut(s) 231, 527, 770
MaeIII GTNAC 4 cut(s) 873, 943, 1625, 1634
MalI GATC 8 cut(s) 377, 627, 649, 762, 1033, 1389, 1398, 1914
MboI GATC 8 cut(s) 375, 625, 647, 760, 1031, 1387, 1396, 1912
MfeI CAATTG 1 cut(s) 1113
MflI RGATCY 2 cut(s) 1031, 1396
MhlI GDGCHC 5 cut(s) 204, 225, 471, 574, 738
MlsI TGGCCA 1 cut(s) 1338
MluNI TGGCCA 1 cut(s) 1338
MlyI GAGTC 1 cut(s) 1798
MmeI TCCRAC 1 cut(s) 126
Mox20I TGGCCA 1 cut(s) 1338
MroI TCCGGA 2 cut(s) 727, 1807
MroXI GAANNNNTTC 2 cut(s) 438, 1213
MscI TGGCCA 1 cut(s) 1338
MseI TTAA 8 cut(s) 372, 411, 423, 690, 741, 903, 1310, 1463
MslI CAYNNNNRTG 2 cut(s) 1632, 1652
Msp20I TGGCCA 1 cut(s) 1338
MspA1I CMGCKG 2 cut(s) 941, 1010
MspCI CTTAAG 2 cut(s) 371, 422
MspI CCGG 3 cut(s) 246, 728, 1808
MspR9I CCNGG 1 cut(s) 1631
MunI CAATTG 1 cut(s) 1113
Mva1269I GAATGC 1 cut(s) 1068
MvaI CCWGG 1 cut(s) 1631
MvnI CGCG 1 cut(s) 1921
MwoI GCNNNNNNNGC 3 cut(s) 1043, 1827, 1836
NdeII GATC 8 cut(s) 375, 625, 647, 760, 1031, 1387, 1396, 1912
NlaIII CATG 7 cut(s) 382, 654, 1190, 1669, 1742, 1901, 1913
NlaIV GGNNCC 6 cut(s) 184, 210, 223, 224, 1246, 1398
NmuCI GTSAC 4 cut(s) 873, 943, 1625, 1634
NspI RCATGY 2 cut(s) 1669, 1742
NspV TTCGAA 1 cut(s) 1890
OliI CACNNNNGTG 2 cut(s) 1632, 1652
PagI TCATGA 1 cut(s) 378
PciI ACATGT 1 cut(s) 1738
PciSI GCTCTTC 2 cut(s) 459, 726
PctI GAATGC 1 cut(s) 1068
PdmI GAANNNNTTC 2 cut(s) 438, 1213
PfeI GAWTC 2 cut(s) 238, 1813
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 6 cut(s) 51, 344, 940, 1045, 1561, 1705
PleI GAGTC 1 cut(s) 1798
PpsI GAGTC 1 cut(s) 1798
PscI ACATGT 1 cut(s) 1738
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 1629
PspGI CCWGG 1 cut(s) 1629
PspN4I GGNNCC 6 cut(s) 184, 210, 223, 224, 1246, 1398
PspOMI GGGCCC 1 cut(s) 221
PspPI GGNCC 4 cut(s) 221, 222, 248, 1261
PstI CTGCAG 1 cut(s) 1643
PsuI RGATCY 2 cut(s) 1031, 1396
PvuII CAGCTG 2 cut(s) 941, 1010
RsaI GTAC 4 cut(s) 73, 420, 1089, 1743
RsaNI GTAC 4 cut(s) 72, 419, 1088, 1742
RseI CAYNNNNRTG 2 cut(s) 1632, 1652
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 2 cut(s) 459, 726
SaqAI TTAA 8 cut(s) 372, 411, 423, 690, 741, 903, 1310, 1463
SatI GCNGC 6 cut(s) 50, 343, 939, 1044, 1560, 1704
Sau3AI GATC 8 cut(s) 375, 625, 647, 760, 1031, 1387, 1396, 1912
Sau96I GGNCC 4 cut(s) 221, 222, 248, 1261
ScaI AGTACT 1 cut(s) 420
SchI GAGTC 1 cut(s) 1798
ScrFI CCNGG 1 cut(s) 1631
SduI GDGCHC 5 cut(s) 204, 225, 471, 574, 738
SfaNI GCATC 3 cut(s) 694, 1004, 1447
SfcI CTRYAG 1 cut(s) 1639
SfuI TTCGAA 1 cut(s) 1890
SinI GGWCC 2 cut(s) 248, 1261
SmiMI CAYNNNNRTG 2 cut(s) 1632, 1652
SmlI CTYRAG 5 cut(s) 371, 422, 497, 605, 839
SmoI CTYRAG 5 cut(s) 371, 422, 497, 605, 839
SsiI CCGC 5 cut(s) 23, 49, 342, 1669, 1919
SspI AATATT 4 cut(s) 31, 518, 552, 1428
SspMI CTAG 1 cut(s) 1265
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 1629
StyI CCWWGG 1 cut(s) 1264
TaaI ACNGT 7 cut(s) 182, 208, 965, 1581, 1625, 1651, 1789
TaiI ACGT 3 cut(s) 234, 530, 773
TaqI TCGA 2 cut(s) 80, 1890
TaqII GACCGA 1 cut(s) 254
TatI WGTACW 2 cut(s) 418, 1741
TauI GCSGC 2 cut(s) 52, 345
TfiI GAWTC 2 cut(s) 238, 1813
Tru1I TTAA 8 cut(s) 372, 411, 423, 690, 741, 903, 1310, 1463
Tru9I TTAA 8 cut(s) 372, 411, 423, 690, 741, 903, 1310, 1463
TscAI CASTG 3 cut(s) 265, 997, 1053
TseFI GTSAC 4 cut(s) 873, 943, 1625, 1634
TseI GCWGC 4 cut(s) 938, 1043, 1559, 1703
Tsp45I GTSAC 4 cut(s) 873, 943, 1625, 1634
TspDTI ATGAA 9 cut(s) 447, 492, 525, 714, 759, 833, 945, 1034, 1667
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 3 cut(s) 265, 997, 1053
Vha464I CTTAAG 2 cut(s) 371, 422
VpaK11BI GGWCC 2 cut(s) 248, 1261
XapI RAATTY 4 cut(s) 783, 1253, 1444, 1595
XceI RCATGY 2 cut(s) 1669, 1742
XcmI CCANNNNNNNNNTGG 1 cut(s) 1431
XmaJI CCTAGG 1 cut(s) 1264
XmiI GTMKAC 1 cut(s) 10
XmnI GAANNNNTTC 2 cut(s) 438, 1213
XspI CTAG 1 cut(s) 1265
ZrmI AGTACT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.