Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002790

Physical Location & Seq

Genomic Coordinates Forward (+)

35641620 .. 35644082

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG325600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATTACAGTAGCAGAGGAGAAAGCTATTCCTCTTACTGGCCCAAAAATATCATGGGCAAATGGGAAAATGAACTCTTGTAATGGCAGCAGCTTAAATCAGAATCACAGAAACACAGAAGTTGCCCTTTCCATTGATGTTTACCATAATGTGCAAAACTGGATCAAGACCCAAGGATTCTTGGTCGTTGGACGTAAAACCTTGACTGAGTTGAGGGATAAGATATACTGTTTAACAGATAAGCTGGAAAATTGCAAAAGAAGGAAAAAAGCAGTTGTATGCAACATAACTGGCTCAAAATTGCCTCTGTTCGAAGCTGATGATATGCACAAGACACAGTTTTGCAACTTGAAATTTCAACTTACTGATATGTCACCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-SNAP50_C

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

9.18

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28560 AT1G28560 AT1G28560
fragaria_vesca	FvH4_6g39210
malus_domestica	MD17G1131000.v1.1
prunus_persica	Prupe.3G183500_v2.0.a1 Prupe.3G183500_v2.0.a1 Prupe.3G183500_v2.0.a1
pyrus_communis	pycom16g05160 pycom16g05170 pycom17g12360
rosa_chinensis	RchiOBHm_Chr2g0153021 RchiOBHm_Chr6g0271881 RchiOBHm_Chr6g0271891 RchiOBHm_Chr6g0271991 RchiOBHm_Chr7g0217251 RchiOBHm_Chr7g0230211
rosa_laevigata	RLG00000001509
rosa_multiflora	Rmu_co8265699.1_g000001 Rmu_sc0002822.1_g000021 Rmu_sc0004110.1_g000009
rosa_roxburghii	Rroxscaffold_2G00095280
rosa_rugosa	Rorug02G0436800 Rorug07G0260000
rosa_samantha	Rh2BG510300 Rh2CG485300 Rh2DG521800 Rh6BG185300 Rh7AG298300 Rh7AG306600 Rh7AG409100 Rh7BG286500 Rh7BG388900 Rh7CG325600 Rh7CG427800 Rh7DG406900
rosa_wichuraiana	Rw0G018570 Rw0G022600 Rw2G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	352, 359
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	26, 93, 244, 317
AluI	AGCT	4 cut(s)	26, 93, 244, 317
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	87, 90
ApoI	RAATTY	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	366
AsuII	TTCGAA	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	99, 102
BciT130I	CCWGG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	88, 91
BlsI	GCNGC	2 cut(s)	89, 92
Bme1390I	CCNGG	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	172, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	3 cut(s)	43, 164, 295
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	172, 377
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	43, 164, 295
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	99, 102
BshFI	GGCC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	170
BspT104I	TTCGAA	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	43, 164, 295
BssECI	CCNNGG	2 cut(s)	172, 377
BssMI	GATC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	10, 230, 339
BstBI	TTCGAA	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	99, 102
BsuRI	GGCC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	41
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	6 cut(s)	26, 42, 93, 244, 294, 317
CviKI_1	RGCY	6 cut(s)	26, 42, 93, 244, 294, 317
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	57
FaiI	YATR	7 cut(s)	55, 147, 226, 280, 287, 326, 371
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	88, 91
Fsp4HI	GCNGC	2 cut(s)	88, 91
GluI	GCNGC	2 cut(s)	88, 91
HaeIII	GGCC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	57
HinfI	GANTC	2 cut(s)	103, 177
HphI	GGTGA	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	3 cut(s)	10, 230, 339
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	5 cut(s)	154, 255, 282, 328, 345
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	162
LpnPI	CCDG	5 cut(s)	24, 145, 230, 276, 363
Lsp1109I	GCAGC	2 cut(s)	99, 102
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MluCI	AATT	3 cut(s)	250, 299, 353
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	4 cut(s)	10, 42, 207, 315
MseI	TTAA	2 cut(s)	95, 233
MslI	CAYNNNNRTG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	372
NspV	TTCGAA	1 cut(s)	312
OliI	CACNNNNGTG	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	103, 177
PkrI	GCNGC	2 cut(s)	89, 92
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	95, 233
SatI	GCNGC	2 cut(s)	88, 91
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	378
SetI	ASST	6 cut(s)	28, 95, 196, 203, 246, 319
SfuI	TTCGAA	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	379
Sse9I	AATT	3 cut(s)	250, 299, 353
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	10, 230, 339
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	312
TasI	AATT	3 cut(s)	250, 299, 353
TfiI	GAWTC	2 cut(s)	103, 177
Tru1I	TTAA	2 cut(s)	95, 233
Tru9I	TTAA	2 cut(s)	95, 233
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	2 cut(s)	87, 90
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	1 cut(s)	86
XapI	RAATTY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.