RchiOBHm_Chr6g0271881

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002790
Physical Location & Seq
Forward (+)
31898522 .. 31901118
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24388

Sequence Viewer

Length: 264 bp
ATGTTTACCATAATGTGCAAAACTAGATCAAGGGTTACCCAAGGATTCTTGGTCGTTGGACGAAAAACCTTGACTGAGTTGAGGGATAAGATATACTGTTTAACAGATAAGGTGATGGAAAAAGATGGCCAGCATAATCATTCAGGATGTTTCCTTATAGAAGATAGATTCTACAAAGATCTGAGGGTTCCTTCTGCATTATATTATAGTCGATCTGTATATGATTGGCTTAGAAATTTAAGAGATGATGCTCTAAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

87

Amino Acids

10.37

Weight (kDa)

9.3

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 15 - 80 1.5e-16 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 235
AoxI GGCC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 124
BalI TGGCCA 1 cut(s) 129
BccI CCATC 2 cut(s) 109, 119
BfaI CTAG 1 cut(s) 24
BglII AGATCT 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 152
BseMII CTCAG 2 cut(s) 66, 173
BshFI GGCC 1 cut(s) 129
BsnI GGCC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 26, 178, 212
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 2 cut(s) 67, 174
BspLI GGNNCC 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 3 cut(s) 26, 178, 212
BssT1I CCWWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 3 cut(s) 75, 182, 230
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 3 cut(s) 29, 181, 215
BstMBI GATC 3 cut(s) 26, 178, 212
BstPI GGTNACC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 131
CviJI RGCY 2 cut(s) 129, 229
CviKI_1 RGCY 2 cut(s) 129, 229
DdeI CTNAG 3 cut(s) 75, 182, 230
DpnI GATC 3 cut(s) 28, 180, 214
DpnII GATC 3 cut(s) 26, 178, 212
EaeI YGGCCR 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaiI YATR 8 cut(s) 11, 94, 135, 158, 202, 207, 220, 222
FokI GGATG 1 cut(s) 159
FspBI CTAG 1 cut(s) 24
HaeIII GGCC 1 cut(s) 129
HinfI GANTC 2 cut(s) 45, 168
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 18, 197
HpyF3I CTNAG 3 cut(s) 75, 182, 230
Kzo9I GATC 3 cut(s) 26, 178, 212
LpnPI CCDG 2 cut(s) 129, 143
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 28, 180, 214
MboI GATC 3 cut(s) 26, 178, 212
MboII GAAGA 1 cut(s) 173
MflI RGATCY 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 1 cut(s) 235
MluNI TGGCCA 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 2 cut(s) 75, 177
Mox20I TGGCCA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 129
MseI TTAA 2 cut(s) 101, 239
Msp20I TGGCCA 1 cut(s) 129
NdeII GATC 3 cut(s) 26, 178, 212
NlaIV GGNNCC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 45, 168
PspEI GGTNACC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 178
SaqAI TTAA 2 cut(s) 101, 239
Sau3AI GATC 3 cut(s) 26, 178, 212
SetI ASST 2 cut(s) 71, 114
SfaNI GCATC 1 cut(s) 238
SgeI CNNG 7 cut(s) 36, 42, 53, 61, 82, 142, 156
Sse9I AATT 1 cut(s) 235
SspMI CTAG 1 cut(s) 24
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 211
TasI AATT 1 cut(s) 235
TfiI GAWTC 2 cut(s) 45, 168
Tru1I TTAA 2 cut(s) 101, 239
Tru9I TTAA 2 cut(s) 101, 239
XapI RAATTY 1 cut(s) 235
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.