Rh7BG388900

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002790
Physical Location & Seq
Forward (+)
42491764 .. 42493176
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG388900.1

Sequence Viewer

Length: 1413 bp
ATGGCAGAGAGCAGCAAAAATGCTGGTGTTGAATACCAAGAAGACACCAATGGCAAAAAATTTGATCGTGGTGAGGAGGAGCTTTCAGTTCCGAGAGGGGGACCCCTCTACGTTCATAATCTGATGAGTCCAATCACCAGTGTCGCTTTCTTCCAGTCTTCGATTCTCCAACAACTGCAGGATTTAAAGGTAGAAGTATCTTCAGTTTCATCTCAAGTTTCTGACGAAGACATCTCGGTGGATGAGCTCAAGATCATCAGTGAGGAAGAATTAGTAGATATGGCTATCAAGGAAGTACTTAAGGATGATGAAAAGGCTCCCAATGAAGGGATATTAGATGACCTTGAGACATCAGATGATAGAACTTGTAAAAAGAAACCAAGGAAAAGAAAAGAAAGGGAGACAACTGCTCTTGAGGACACTTACAGGGACAAGAAGGTTTTTTGGTCACATATTGCAAAGAAGGTGGAGCATATTAAGAAAATCAAAGAAAAGCAGGATGAAGATAAAGCAGCTGTTACACTGCATTCATGCAACCCTAGTCTGAAAATCGAGGGTTGCCGTGCTGTCACATCATCCTCAAGAACAATTGAAAGGCTAATGCCCCTTAGGTCTGCAAGTTCAGCAGTAAAGGTAAAGTCATGCAGCAACAGTAGCATTCAGGACTACATACCTGTGCACCATCCAGAAGTTGCTCTTACAGTCGAGGTTTACCATAATGTGAAAATCTGGATCAAGACACAAGAATTCTTGGTACTAGGGAGACAAAGCTTAACTGAATTGAGAGATAAGATATACTGCTTAACAGACCATGTGATGCGAAAAGATCCATCAGGATATTTCCTCATTGAGGATACATTCTACAATGATTTGCGTGACCCCTCGGCATTAGACTACAGTGAGCCTATACTTGATTGGCTTACAAACTCAAGAGATAATGCTCTTCAAAAATGGGAATCCATTTTAGGTGGAGCTAACATGCAAAAGCAGAAAAAACTAGCAGTTGTTGACGGTATAAAAGGCTCACAATTGCCTCATTATAGAGTTATTGACATGCACAAGACAAAGTTTAGGGACTTGAAATTTCGACTTGGTGCTGGTTATCTGTATTGTCACCAGGGAGACTGCAGGCACACCATTGTAATTAGAGATATGCGATTGCTTCATCCGGAGGATGTACAGAACAGTGCAGTTTATCCAATACTGTTATTCCAACTGAAGCTACATGTACGAAAATGTAATGTTTGTAGGATATATAGAGCCACAAAGGTGACTGTAGATGACAAATATGCTCCGGAGAACCCTTGCTACTTCTGCGAGCAGTGCTATTACCTTCTTCACTATAAGGGTGATGGTTCTCTGCATTATCAGGACTTTGAAGTGTATGATTATCAGCACGATCAACCGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

470

Amino Acids

54.27

Weight (kDa)

6.3

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 248 - 464 6.7e-69 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1408
AccIII TCCGGA 2 cut(s) 1168, 1294
AciI CCGC 1 cut(s) 1406
AclWI GGATC 2 cut(s) 740, 821
AcsI RAATTY 3 cut(s) 59, 746, 1082
AcuI CTGAAG 2 cut(s) 186, 1238
AfaI GTAC 4 cut(s) 297, 756, 1179, 1230
AfiI CCNNNNNNNGG 4 cut(s) 98, 326, 327, 850
AflII CTTAAG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 1225
AgsI TTSAA 5 cut(s) 32, 593, 947, 1081, 1379
AjnI CCWGG 1 cut(s) 1116
AleI CACNNNNGTG 1 cut(s) 1268
AluBI AGCT 6 cut(s) 82, 247, 515, 771, 974, 1222
AluI AGCT 6 cut(s) 82, 247, 515, 771, 974, 1222
Alw21I GWGCWC 2 cut(s) 249, 681
Alw26I GTCTC 4 cut(s) 341, 395, 757, 1116
Alw44I GTGCAC 1 cut(s) 677
AlwI GGATC 2 cut(s) 740, 821
Aor13HI TCCGGA 2 cut(s) 1168, 1294
ApaLI GTGCAC 1 cut(s) 677
ApeKI GCWGC 3 cut(s) 12, 512, 645
ApoI RAATTY 3 cut(s) 59, 746, 1082
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 5 cut(s) 83, 127, 1106, 1282, 1361
AvaII GGWCC 1 cut(s) 101
AxyI CCTNAGG 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 681
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 3 cut(s) 48, 150, 234
Bbv12I GWGCWC 2 cut(s) 249, 681
BbvI GCAGC 3 cut(s) 24, 524, 657
BccI CCATC 3 cut(s) 690, 838, 1346
BceAI ACGGC 1 cut(s) 546
BciT130I CCWGG 1 cut(s) 1118
BciVI GTATCC 1 cut(s) 847
BcoDI GTCTC 4 cut(s) 341, 395, 757, 1116
BfaI CTAG 3 cut(s) 540, 758, 998
BfmI CTRYAG 4 cut(s) 176, 895, 1126, 1275
BfrI CTTAAG 1 cut(s) 299
BfuI GTATCC 1 cut(s) 847
BisI GCNGC 3 cut(s) 13, 513, 646
BlsI GCNGC 3 cut(s) 14, 514, 647
BmcAI AGTACT 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 1118
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 3 cut(s) 102, 103, 318
BmrFI CCNGG 1 cut(s) 1118
BmsI GCATC 1 cut(s) 807
BpiI GAAGAC 3 cut(s) 48, 150, 234
BpuEI CTTGAG 6 cut(s) 198, 233, 365, 434, 565, 913
BsaJI CCNNGG 3 cut(s) 380, 882, 1117
BsaWI WCCGGW 2 cut(s) 1168, 1294
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 326, 327, 850
Bse1I ACTGG 2 cut(s) 138, 154
Bse21I CCTNAGG 1 cut(s) 608
BseAI TCCGGA 2 cut(s) 1168, 1294
BseBI CCWGG 1 cut(s) 1118
BseDI CCNNGG 3 cut(s) 380, 882, 1117
BseGI GGATG 7 cut(s) 247, 310, 505, 575, 682, 1165, 1180
BseLI CCNNNNNNNGG 4 cut(s) 98, 326, 327, 850
BseNI ACTGG 2 cut(s) 138, 154
BseRI GAGGAG 2 cut(s) 89, 92
BseSI GKGCMC 1 cut(s) 681
BseXI GCAGC 3 cut(s) 24, 524, 657
BsgI GTGCAG 1 cut(s) 1209
Bsh1236I CGCG 1 cut(s) 1408
BsiHKAI GWGCWC 2 cut(s) 249, 681
BsiSI CCGG 2 cut(s) 1169, 1295
BslFI GGGAC 3 cut(s) 114, 443, 1088
BslI CCNNNNNNNGG 4 cut(s) 98, 326, 327, 850
BsmAI GTCTC 4 cut(s) 341, 395, 757, 1116
BsmFI GGGAC 3 cut(s) 114, 443, 1088
BsmI GAATGC 2 cut(s) 526, 657
Bsp1286I GDGCHC 2 cut(s) 249, 681
Bsp13I TCCGGA 2 cut(s) 1168, 1294
Bsp1407I TGTACA 1 cut(s) 1177
Bsp143I GATC 5 cut(s) 64, 252, 732, 826, 1399
BspACI CCGC 1 cut(s) 1406
BspEI TCCGGA 2 cut(s) 1168, 1294
BspFNI CGCG 1 cut(s) 1408
BspLI GGNNCC 3 cut(s) 102, 103, 318
BspMAI CTGCAG 2 cut(s) 180, 1130
BspPI GGATC 2 cut(s) 740, 821
BspQI GCTCTTC 1 cut(s) 948
BspTI CTTAAG 1 cut(s) 299
BsrGI TGTACA 1 cut(s) 1177
BsrI ACTGG 2 cut(s) 138, 154
BssECI CCNNGG 3 cut(s) 380, 882, 1117
BssMI GATC 5 cut(s) 64, 252, 732, 826, 1399
BssT1I CCWWGG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 1118
Bst4CI ACNGT 7 cut(s) 653, 703, 899, 1013, 1187, 1206, 1276
Bst6I CTCTTC 1 cut(s) 948
BstAFI CTTAAG 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 1177
BstC8I GCNNGC 2 cut(s) 1130, 1319
BstDEI CTNAG 1 cut(s) 608
BstENI CCTNNNNNAGG 1 cut(s) 848
BstF5I GGATG 7 cut(s) 247, 310, 505, 575, 682, 1165, 1180
BstFNI CGCG 1 cut(s) 1408
BstKTI GATC 5 cut(s) 67, 255, 735, 829, 1402
BstMAI GTCTC 4 cut(s) 341, 395, 757, 1116
BstMBI GATC 5 cut(s) 64, 252, 732, 826, 1399
BstMWI GCNNNNNNNGC 4 cut(s) 623, 654, 1314, 1323
BstNI CCWGG 1 cut(s) 1118
BstNSI RCATGY 3 cut(s) 982, 1057, 1229
BstSCI CCNGG 1 cut(s) 1116
BstSFI CTRYAG 4 cut(s) 176, 895, 1126, 1275
BstSLI GKGCMC 1 cut(s) 681
BstUI CGCG 1 cut(s) 1408
BstV1I GCAGC 3 cut(s) 24, 524, 657
BstV2I GAAGAC 3 cut(s) 48, 150, 234
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
Bsu36I CCTNAGG 1 cut(s) 608
BsuI GTATCC 1 cut(s) 847
BtsCI GGATG 7 cut(s) 247, 310, 505, 575, 682, 1165, 1180
BtsI GCAGTG 2 cut(s) 521, 1328
BtsIMutI CAGTG 6 cut(s) 145, 265, 521, 904, 1192, 1328
Cac8I GCNNGC 2 cut(s) 1130, 1319
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 4 cut(s) 296, 755, 1178, 1229
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 6 cut(s) 531, 642, 812, 979, 1054, 1226
CviQI GTAC 4 cut(s) 296, 755, 1178, 1229
DdeI CTNAG 1 cut(s) 608
DpnI GATC 5 cut(s) 66, 254, 734, 828, 1401
DpnII GATC 5 cut(s) 64, 252, 732, 826, 1399
DraI TTTAAA 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 948
EarI CTCTTC 1 cut(s) 948
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 380
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 2 cut(s) 186, 1238
Eco81I CCTNAGG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 848
EcoO109I RGGNCCY 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 746
EcoRII CCWGG 1 cut(s) 1116
EcoT14I CCWWGG 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 6 cut(s) 534, 645, 815, 982, 1057, 1229
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FaqI GGGAC 3 cut(s) 114, 443, 1088
FatI CATG 6 cut(s) 530, 641, 811, 978, 1053, 1225
Fnu4HI GCNGC 3 cut(s) 13, 513, 646
FokI GGATG 7 cut(s) 254, 317, 512, 562, 669, 1152, 1187
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 13, 513, 646
FspBI CTAG 3 cut(s) 540, 758, 998
GluI GCNGC 3 cut(s) 13, 513, 646
HapII CCGG 2 cut(s) 1169, 1295
Hin1II CATG 6 cut(s) 534, 645, 815, 982, 1057, 1229
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HindIII AAGCTT 1 cut(s) 769
HinfI GANTC 3 cut(s) 127, 163, 956
HpaII CCGG 2 cut(s) 1169, 1295
HphI GGTGA 5 cut(s) 83, 127, 1106, 1282, 1361
Hpy166II GTNNAC 3 cut(s) 679, 712, 1009
Hpy188I TCNGA 5 cut(s) 93, 123, 223, 355, 546
Hpy8I GTNNAC 3 cut(s) 679, 712, 1009
HpyAV CCTTC 4 cut(s) 320, 430, 457, 1343
HpyCH4III ACNGT 7 cut(s) 653, 703, 899, 1013, 1187, 1206, 1276
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 4 cut(s) 623, 654, 1314, 1323
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 6 cut(s) 534, 645, 815, 982, 1057, 1229
KflI GGGWCCC 1 cut(s) 101
Kpn2I TCCGGA 2 cut(s) 1168, 1294
Kzo9I GATC 5 cut(s) 64, 252, 732, 826, 1399
LguI GCTCTTC 1 cut(s) 948
LmnI GCTCC 5 cut(s) 79, 322, 469, 971, 1297
Lsp1109I GCAGC 3 cut(s) 24, 524, 657
LweI GCATC 1 cut(s) 807
MaeI CTAG 3 cut(s) 540, 758, 998
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 6 cut(s) 447, 517, 568, 875, 1112, 1270
MalI GATC 5 cut(s) 66, 254, 734, 828, 1401
MboI GATC 5 cut(s) 64, 252, 732, 826, 1399
MboII GAAGA 9 cut(s) 53, 142, 150, 192, 239, 278, 515, 935, 1328
MfeI CAATTG 2 cut(s) 588, 1028
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 2 cut(s) 249, 681
MluCI AATT 8 cut(s) 59, 269, 588, 746, 779, 1028, 1082, 1143
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 2 cut(s) 193, 1237
MroI TCCGGA 2 cut(s) 1168, 1294
MseI TTAA 5 cut(s) 185, 300, 477, 773, 803
MslI CAYNNNNRTG 3 cut(s) 236, 674, 1268
MspA1I CMGCKG 1 cut(s) 515
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 2 cut(s) 1169, 1295
MspR9I CCNGG 1 cut(s) 1118
MunI CAATTG 2 cut(s) 588, 1028
Mva1269I GAATGC 2 cut(s) 526, 657
MvaI CCWGG 1 cut(s) 1118
MvnI CGCG 1 cut(s) 1408
MwoI GCNNNNNNNGC 4 cut(s) 623, 654, 1314, 1323
NdeII GATC 5 cut(s) 64, 252, 732, 826, 1399
NlaIII CATG 6 cut(s) 534, 645, 815, 982, 1057, 1229
NlaIV GGNNCC 3 cut(s) 102, 103, 318
NmeAIII GCCGAG 1 cut(s) 863
NmuCI GTSAC 5 cut(s) 447, 568, 875, 1112, 1270
NspI RCATGY 3 cut(s) 982, 1057, 1229
OliI CACNNNNGTG 1 cut(s) 1268
PciI ACATGT 1 cut(s) 1225
PciSI GCTCTTC 1 cut(s) 948
PctI GAATGC 2 cut(s) 526, 657
PfeI GAWTC 2 cut(s) 163, 956
PkrI GCNGC 3 cut(s) 14, 514, 647
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 101
PscI ACATGT 1 cut(s) 1225
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 1116
PspGI CCWGG 1 cut(s) 1116
PspN4I GGNNCC 3 cut(s) 102, 103, 318
PspPI GGNCC 1 cut(s) 101
PspPPI RGGWCCY 1 cut(s) 101
PsrI GAACNNNNNNTAC 2 cut(s) 1292, 1324
PstI CTGCAG 2 cut(s) 180, 1130
PsuI RGATCY 1 cut(s) 826
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 4 cut(s) 297, 756, 1179, 1230
RsaNI GTAC 4 cut(s) 296, 755, 1178, 1229
RseI CAYNNNNRTG 3 cut(s) 236, 674, 1268
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 948
SaqAI TTAA 5 cut(s) 185, 300, 477, 773, 803
SatI GCNGC 3 cut(s) 13, 513, 646
Sau3AI GATC 5 cut(s) 64, 252, 732, 826, 1399
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 297
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 1118
SduI GDGCHC 2 cut(s) 249, 681
SfaNI GCATC 1 cut(s) 807
SfcI CTRYAG 4 cut(s) 176, 895, 1126, 1275
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 3 cut(s) 236, 674, 1268
SmlI CTYRAG 7 cut(s) 213, 248, 299, 344, 413, 580, 928
SmoI CTYRAG 7 cut(s) 213, 248, 299, 344, 413, 580, 928
Sse9I AATT 8 cut(s) 59, 269, 588, 746, 779, 1028, 1082, 1143
SsiI CCGC 1 cut(s) 1406
SspMI CTAG 3 cut(s) 540, 758, 998
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 1116
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 7 cut(s) 653, 703, 899, 1013, 1187, 1206, 1276
TaiI ACGT 1 cut(s) 114
TaqI TCGA 4 cut(s) 161, 552, 705, 1087
TasI AATT 8 cut(s) 59, 269, 588, 746, 779, 1028, 1082, 1143
TatI WGTACW 2 cut(s) 295, 1177
TfiI GAWTC 2 cut(s) 163, 956
Tru1I TTAA 5 cut(s) 185, 300, 477, 773, 803
Tru9I TTAA 5 cut(s) 185, 300, 477, 773, 803
TscAI CASTG 6 cut(s) 145, 265, 528, 904, 1192, 1328
TseFI GTSAC 5 cut(s) 447, 568, 875, 1112, 1270
TseI GCWGC 3 cut(s) 12, 512, 645
Tsp45I GTSAC 5 cut(s) 447, 568, 875, 1112, 1270
TspDTI ATGAA 7 cut(s) 104, 198, 324, 339, 516, 519, 1154
TspRI CASTG 6 cut(s) 145, 265, 528, 904, 1192, 1328
Vha464I CTTAAG 1 cut(s) 299
VneI GTGCAC 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 848
XapI RAATTY 3 cut(s) 59, 746, 1082
XceI RCATGY 3 cut(s) 982, 1057, 1229
XspI CTAG 3 cut(s) 540, 758, 998
ZrmI AGTACT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.