pycom16g05160

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002790
Physical Location & Seq
Forward (+)
3352173 .. 3352415
243 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g05160.1

Sequence Viewer

Length: 243 bp
ATGTCAGCCAGCATTCAGGATTACTCCATGCCTGTGCACTATCCAGAAGTTGTTCTTTCAATTGGGGTTTACCATAACGTGCGAAAACGGATGAAGATCCGAGAGTTGTTGGTTCTTAGACAGCAAACTTTAACCGAACTGAGGGATAAGATCTACTGCTCAACAGACAATGCGATGCAGAAGGCCGGTCAACATGATCCTTCGGGATACTTCCTTATCGAAGACATTTTGCAACGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

81

Amino Acids

9.33

Weight (kDa)

7.91

Isoelectric Point (pI)

71.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 35 - 77 3.1e-09 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 91, 191
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 1 cut(s) 60
Alw21I GWGCWC 1 cut(s) 39
Alw44I GTGCAC 1 cut(s) 35
AlwI GGATC 2 cut(s) 91, 191
AoxI GGCC 1 cut(s) 183
ApaLI GTGCAC 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 39
BciVI GTATCC 1 cut(s) 200
BfuI GTATCC 1 cut(s) 200
BglII AGATCT 1 cut(s) 150
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 95
BseGI GGATG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 39
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 141
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 4 cut(s) 96, 150, 196, 236
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 91, 191
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 4 cut(s) 96, 150, 196, 236
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 3 cut(s) 116, 140, 240
BstF5I GGATG 1 cut(s) 96
BstKTI GATC 4 cut(s) 99, 153, 199, 239
BstMBI GATC 4 cut(s) 96, 150, 196, 236
BstSLI GKGCMC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 2 cut(s) 96, 150
BstYI RGATCY 2 cut(s) 96, 150
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 185
CviAII CATG 2 cut(s) 28, 194
CviJI RGCY 2 cut(s) 8, 185
CviKI_1 RGCY 2 cut(s) 8, 185
DdeI CTNAG 3 cut(s) 116, 140, 240
DpnI GATC 4 cut(s) 98, 152, 198, 238
DpnII GATC 4 cut(s) 96, 150, 196, 236
FaeI CATG 2 cut(s) 31, 197
FaiI YATR 3 cut(s) 29, 75, 195
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 2 cut(s) 27, 193
FokI GGATG 1 cut(s) 103
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 186
Hin1II CATG 2 cut(s) 31, 197
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 3 cut(s) 37, 70, 191
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 3 cut(s) 17, 44, 204
Hpy8I GTNNAC 3 cut(s) 37, 70, 191
HpyAV CCTTC 2 cut(s) 175, 210
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 37, 178, 232
HpyF3I CTNAG 3 cut(s) 116, 140, 240
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 31, 197
Kzo9I GATC 4 cut(s) 96, 150, 196, 236
LpnPI CCDG 5 cut(s) 2, 22, 45, 57, 199
LweI GCATC 1 cut(s) 165
MaeII ACGT 1 cut(s) 78
MalI GATC 4 cut(s) 98, 152, 198, 238
MboI GATC 4 cut(s) 96, 150, 196, 236
MboII GAAGA 2 cut(s) 106, 233
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 2 cut(s) 96, 150
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 60
MnlI CCTC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 51
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 12
NdeII GATC 4 cut(s) 96, 150, 196, 236
NlaIII CATG 2 cut(s) 31, 197
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 51
PsuI RGATCY 2 cut(s) 96, 150
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 131
Sau3AI GATC 4 cut(s) 96, 150, 196, 236
SduI GDGCHC 1 cut(s) 39
SetI ASST 1 cut(s) 81
SfaNI GCATC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 1 cut(s) 60
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 60
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 103
VneI GTGCAC 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.