Rh7AG409100

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002790
Physical Location & Seq
Forward (+)
54579248 .. 54580666
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG409100.1

Sequence Viewer

Length: 1419 bp
ATGGCAGAAGGCGGCAAAAATGCTGGTGTTGAATACCAAGAAGACACCAATGGCAAAAAATTTGATCGTGGTGAGGAGGAGGAGGAGCTTTCAGTTCCGAGAGGGGGACCCCTCTACGTTCATAATCTGATGAGTCCAATCACCAGTGTCCCTTTCTTCCAGTCTTCGATTCTCCAACAACTGCAGGATTTAGAGGTAGAAGTATCTTCAGTTTCATCTCAAGTTTCTGACGAAGACATCTCGGTGGATGAGCTCAAGATCATCAGTGAGGAAGAATTCGTAGATATGGCTATCAAGGAAGTACTTAAGGATGATGAAAAAGCTCCCAATGAAGGGATAGCAGATGACCTTGAGGCATCAGATGATAGAACTTGTAAAAAGAAACCAAGGAAAAGAAAAGAAAGGGAGGCAAATGCTCTTGAGGACACTTACAGGGACAAGAAGGTTTTTTGGTCACATATTGCAAAGAAGGTGGAGCATATTAAGAAAATCAAAGAAAAACAGGATGAAGATAAAGCAGCTGTTACACTGCATTCATACAACCCTAGTCTGAAAATCGAGGGTCGCCGTGCTGTCACATCATCCTCAAGAACAATTGAAAGGTTAAAGCCCCTCAGGTCTGCAAGTTCAGCAGTAAAGGTAAAGTCATGCAGCAACAGTAGCATTCAGGACTACATACCTGTGCACCATTCAGAAGTTGCTCTTACAGTCGAGGTTTACCATAATGTGAAAATCTGGATCAAGACACAAGAATTCTTGGTACTAGGGAGACAAAGCTTAACTGAATTGAGGGATAAGATATACTGCTTAACAGACCATGCGATGCGAAAAGATCCATCAGGATATTTCCTGATTGAGGATACATTCTACAATGATTTGCGTGACCCCTCGGCATTAGACTACAGTGAGCCTATACTTGATTGGCTTACAAACTCAAGAGATAATGCTCTTCAAAAATGGGAATCCATTTTAGGTGGAGCTAACATGCAAAAGCAGAAAAAACTAGCAGTTGTTGACGGTATAAAAGGCTCACAATTGCCTCATTATAGAGTTATTGACATGCACAAGACAAAGTTTAGGGACTTGAAATTTCGACTTGGTGCTGGTTATCTGTATTGTCACCAGGGAGACTGCAGGCACACCATTGTAATTAGAGACATGCGATTGCTTCATCCGGAGGATGTACAGAACAGTGCAGTTTATCCGATACTCTTATTCCAACTGAAGCTACATGTACGAAAATGTAATGTTTGTAGGATATATAGAGTCACAAAGGTGACTGTAGATGACAAATATGCTCCGGAGAACCCTTGCTACTTCTGCGAGCAGTGCTATTACCTTCTTCACTATAAGGGTGATGGTTCGCTGCATTATCAGGACTTTGAAGTGTATGATTATCAGCACGATCAACCACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

472

Amino Acids

54.54

Weight (kDa)

6.13

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 250 - 466 7.5e-69 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 1174, 1300
AciI CCGC 1 cut(s) 12
AclWI GGATC 2 cut(s) 746, 827
AcsI RAATTY 4 cut(s) 59, 275, 752, 1088
AcuI CTGAAG 2 cut(s) 192, 1244
AfaI GTAC 4 cut(s) 303, 762, 1185, 1236
AfiI CCNNNNNNNGG 4 cut(s) 104, 332, 333, 856
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 1231
AgsI TTSAA 5 cut(s) 32, 599, 953, 1087, 1385
AjnI CCWGG 1 cut(s) 1122
AleI CACNNNNGTG 1 cut(s) 1274
AluBI AGCT 7 cut(s) 88, 253, 323, 521, 777, 980, 1228
AluI AGCT 7 cut(s) 88, 253, 323, 521, 777, 980, 1228
Alw21I GWGCWC 2 cut(s) 255, 687
Alw26I GTCTC 3 cut(s) 763, 1122, 1149
Alw44I GTGCAC 1 cut(s) 683
AlwI GGATC 2 cut(s) 746, 827
Aor13HI TCCGGA 2 cut(s) 1174, 1300
ApaLI GTGCAC 1 cut(s) 683
ApeKI GCWGC 3 cut(s) 518, 651, 1366
ApoI RAATTY 4 cut(s) 59, 275, 752, 1088
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 5 cut(s) 83, 133, 1112, 1288, 1367
AvaII GGWCC 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 614
BaeGI GKGCMC 1 cut(s) 687
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 3 cut(s) 48, 156, 240
Bbv12I GWGCWC 2 cut(s) 255, 687
BbvI GCAGC 3 cut(s) 530, 663, 1353
BccI CCATC 2 cut(s) 844, 1352
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 1 cut(s) 1124
BciVI GTATCC 1 cut(s) 853
BcoDI GTCTC 3 cut(s) 763, 1122, 1149
BfaI CTAG 3 cut(s) 546, 764, 1004
BfmI CTRYAG 4 cut(s) 182, 901, 1132, 1281
BfrI CTTAAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 853
BisI GCNGC 4 cut(s) 13, 519, 652, 1367
BlsI GCNGC 4 cut(s) 14, 520, 653, 1368
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 1124
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 108, 109
BmrFI CCNGG 1 cut(s) 1124
BmsI GCATC 2 cut(s) 365, 813
BpiI GAAGAC 3 cut(s) 48, 156, 240
BpuEI CTTGAG 6 cut(s) 204, 239, 371, 440, 571, 919
BsaJI CCNNGG 3 cut(s) 386, 888, 1123
BsaWI WCCGGW 2 cut(s) 1174, 1300
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 332, 333, 856
Bse1I ACTGG 2 cut(s) 144, 160
Bse21I CCTNAGG 1 cut(s) 614
BseAI TCCGGA 2 cut(s) 1174, 1300
BseBI CCWGG 1 cut(s) 1124
BseDI CCNNGG 3 cut(s) 386, 888, 1123
BseGI GGATG 6 cut(s) 253, 316, 511, 581, 1171, 1186
BseLI CCNNNNNNNGG 4 cut(s) 104, 332, 333, 856
BseMII CTCAG 1 cut(s) 628
BseNI ACTGG 2 cut(s) 144, 160
BseRI GAGGAG 4 cut(s) 89, 92, 95, 98
BseSI GKGCMC 1 cut(s) 687
BseXI GCAGC 3 cut(s) 530, 663, 1353
BsgI GTGCAG 1 cut(s) 1215
BsiHKAI GWGCWC 2 cut(s) 255, 687
BsiSI CCGG 2 cut(s) 1175, 1301
BslFI GGGAC 4 cut(s) 120, 134, 449, 1094
BslI CCNNNNNNNGG 4 cut(s) 104, 332, 333, 856
BsmAI GTCTC 3 cut(s) 763, 1122, 1149
BsmFI GGGAC 4 cut(s) 120, 134, 449, 1094
BsmI GAATGC 2 cut(s) 532, 663
Bsp1286I GDGCHC 2 cut(s) 255, 687
Bsp13I TCCGGA 2 cut(s) 1174, 1300
Bsp1407I TGTACA 1 cut(s) 1183
Bsp143I GATC 5 cut(s) 64, 258, 738, 832, 1405
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 627
BspEI TCCGGA 2 cut(s) 1174, 1300
BspLI GGNNCC 2 cut(s) 108, 109
BspMAI CTGCAG 2 cut(s) 186, 1136
BspPI GGATC 2 cut(s) 746, 827
BspQI GCTCTTC 1 cut(s) 954
BspTI CTTAAG 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 1183
BsrI ACTGG 2 cut(s) 144, 160
BssECI CCNNGG 3 cut(s) 386, 888, 1123
BssMI GATC 5 cut(s) 64, 258, 738, 832, 1405
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 1124
Bst4CI ACNGT 6 cut(s) 659, 709, 905, 1019, 1193, 1282
Bst6I CTCTTC 1 cut(s) 954
BstAFI CTTAAG 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 1183
BstC8I GCNNGC 2 cut(s) 1136, 1325
BstDEI CTNAG 1 cut(s) 614
BstENI CCTNNNNNAGG 1 cut(s) 854
BstF5I GGATG 6 cut(s) 253, 316, 511, 581, 1171, 1186
BstKTI GATC 5 cut(s) 67, 261, 741, 835, 1408
BstMAI GTCTC 3 cut(s) 763, 1122, 1149
BstMBI GATC 5 cut(s) 64, 258, 738, 832, 1405
BstMWI GCNNNNNNNGC 4 cut(s) 629, 660, 1320, 1329
BstNI CCWGG 1 cut(s) 1124
BstNSI RCATGY 4 cut(s) 988, 1063, 1162, 1235
BstSCI CCNGG 1 cut(s) 1122
BstSFI CTRYAG 4 cut(s) 182, 901, 1132, 1281
BstSLI GKGCMC 1 cut(s) 687
BstV1I GCAGC 3 cut(s) 530, 663, 1353
BstV2I GAAGAC 3 cut(s) 48, 156, 240
BstX2I RGATCY 1 cut(s) 832
BstYI RGATCY 1 cut(s) 832
Bsu36I CCTNAGG 1 cut(s) 614
BsuI GTATCC 1 cut(s) 853
BtgZI GCGATG 1 cut(s) 836
BtsCI GGATG 6 cut(s) 253, 316, 511, 581, 1171, 1186
BtsI GCAGTG 2 cut(s) 527, 1334
BtsIMutI CAGTG 6 cut(s) 151, 271, 527, 910, 1198, 1334
Cac8I GCNNGC 2 cut(s) 1136, 1325
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 4 cut(s) 302, 761, 1184, 1235
CspCI CAANNNNNGTGG 2 cut(s) 453, 488
CviAII CATG 6 cut(s) 648, 818, 985, 1060, 1159, 1232
CviQI GTAC 4 cut(s) 302, 761, 1184, 1235
DdeI CTNAG 1 cut(s) 614
DpnI GATC 5 cut(s) 66, 260, 740, 834, 1407
DpnII GATC 5 cut(s) 64, 258, 738, 832, 1405
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 386
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 192, 1244
Eco81I CCTNAGG 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 854
EcoO109I RGGNCCY 1 cut(s) 107
EcoRI GAATTC 2 cut(s) 275, 752
EcoRII CCWGG 1 cut(s) 1122
EcoT14I CCWWGG 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 6 cut(s) 651, 821, 988, 1063, 1162, 1235
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FaqI GGGAC 4 cut(s) 120, 134, 449, 1094
FatI CATG 6 cut(s) 647, 817, 984, 1059, 1158, 1231
Fnu4HI GCNGC 4 cut(s) 13, 519, 652, 1367
FokI GGATG 6 cut(s) 260, 323, 518, 568, 1158, 1193
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 4 cut(s) 13, 519, 652, 1367
FspBI CTAG 3 cut(s) 546, 764, 1004
GluI GCNGC 4 cut(s) 13, 519, 652, 1367
HapII CCGG 2 cut(s) 1175, 1301
Hin1II CATG 6 cut(s) 651, 821, 988, 1063, 1162, 1235
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HindIII AAGCTT 1 cut(s) 775
HinfI GANTC 4 cut(s) 133, 169, 962, 1266
HpaII CCGG 2 cut(s) 1175, 1301
HphI GGTGA 5 cut(s) 83, 133, 1112, 1288, 1367
Hpy166II GTNNAC 3 cut(s) 685, 718, 1015
Hpy188I TCNGA 7 cut(s) 99, 129, 229, 361, 552, 694, 1206
Hpy8I GTNNAC 3 cut(s) 685, 718, 1015
HpyAV CCTTC 4 cut(s) 326, 436, 463, 1349
HpyCH4III ACNGT 6 cut(s) 659, 709, 905, 1019, 1193, 1282
HpyCH4IV ACGT 2 cut(s) 117, 1414
HpyF10VI GCNNNNNNNGC 4 cut(s) 629, 660, 1320, 1329
HpyF3I CTNAG 1 cut(s) 614
HpySE526I ACGT 2 cut(s) 117, 1414
Hsp92II CATG 6 cut(s) 651, 821, 988, 1063, 1162, 1235
KflI GGGWCCC 1 cut(s) 107
Kpn2I TCCGGA 2 cut(s) 1174, 1300
Kzo9I GATC 5 cut(s) 64, 258, 738, 832, 1405
LguI GCTCTTC 1 cut(s) 954
LmnI GCTCC 5 cut(s) 85, 328, 475, 977, 1303
Lsp1109I GCAGC 3 cut(s) 530, 663, 1353
LweI GCATC 2 cut(s) 365, 813
MaeI CTAG 3 cut(s) 546, 764, 1004
MaeII ACGT 2 cut(s) 117, 1414
MaeIII GTNAC 7 cut(s) 453, 523, 574, 881, 1118, 1267, 1276
MalI GATC 5 cut(s) 66, 260, 740, 834, 1407
MboI GATC 5 cut(s) 64, 258, 738, 832, 1405
MboII GAAGA 9 cut(s) 53, 148, 156, 198, 245, 284, 521, 941, 1334
MfeI CAATTG 2 cut(s) 594, 1034
MflI RGATCY 1 cut(s) 832
MhlI GDGCHC 2 cut(s) 255, 687
MluCI AATT 8 cut(s) 59, 275, 594, 752, 785, 1034, 1088, 1149
MlyI GAGTC 2 cut(s) 142, 1275
MmeI TCCRAC 2 cut(s) 199, 1243
MroI TCCGGA 2 cut(s) 1174, 1300
MseI TTAA 5 cut(s) 306, 483, 605, 779, 809
MslI CAYNNNNRTG 3 cut(s) 242, 680, 1274
MspA1I CMGCKG 1 cut(s) 521
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 2 cut(s) 1175, 1301
MspR9I CCNGG 1 cut(s) 1124
MunI CAATTG 2 cut(s) 594, 1034
Mva1269I GAATGC 2 cut(s) 532, 663
MvaI CCWGG 1 cut(s) 1124
MwoI GCNNNNNNNGC 4 cut(s) 629, 660, 1320, 1329
NdeII GATC 5 cut(s) 64, 258, 738, 832, 1405
NlaIII CATG 6 cut(s) 651, 821, 988, 1063, 1162, 1235
NlaIV GGNNCC 2 cut(s) 108, 109
NmeAIII GCCGAG 1 cut(s) 869
NmuCI GTSAC 6 cut(s) 453, 574, 881, 1118, 1267, 1276
NspI RCATGY 4 cut(s) 988, 1063, 1162, 1235
OliI CACNNNNGTG 1 cut(s) 1274
PciI ACATGT 1 cut(s) 1231
PciSI GCTCTTC 1 cut(s) 954
PctI GAATGC 2 cut(s) 532, 663
PfeI GAWTC 2 cut(s) 169, 962
PkrI GCNGC 4 cut(s) 14, 520, 653, 1368
PleI GAGTC 2 cut(s) 141, 1274
PpsI GAGTC 2 cut(s) 141, 1274
PpuMI RGGWCCY 1 cut(s) 107
PscI ACATGT 1 cut(s) 1231
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 1122
PspGI CCWGG 1 cut(s) 1122
PspN4I GGNNCC 2 cut(s) 108, 109
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
PsrI GAACNNNNNNTAC 2 cut(s) 1298, 1330
PstI CTGCAG 2 cut(s) 186, 1136
PsuI RGATCY 1 cut(s) 832
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 4 cut(s) 303, 762, 1185, 1236
RsaNI GTAC 4 cut(s) 302, 761, 1184, 1235
RseI CAYNNNNRTG 3 cut(s) 242, 680, 1274
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 954
SaqAI TTAA 5 cut(s) 306, 483, 605, 779, 809
SatI GCNGC 4 cut(s) 13, 519, 652, 1367
Sau3AI GATC 5 cut(s) 64, 258, 738, 832, 1405
Sau96I GGNCC 1 cut(s) 107
ScaI AGTACT 1 cut(s) 303
SchI GAGTC 2 cut(s) 142, 1275
ScrFI CCNGG 1 cut(s) 1124
SduI GDGCHC 2 cut(s) 255, 687
SfaNI GCATC 2 cut(s) 365, 813
SfcI CTRYAG 4 cut(s) 182, 901, 1132, 1281
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 3 cut(s) 242, 680, 1274
SmlI CTYRAG 7 cut(s) 219, 254, 305, 350, 419, 586, 934
SmoI CTYRAG 7 cut(s) 219, 254, 305, 350, 419, 586, 934
Sse9I AATT 8 cut(s) 59, 275, 594, 752, 785, 1034, 1088, 1149
SsiI CCGC 1 cut(s) 12
SspMI CTAG 3 cut(s) 546, 764, 1004
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 1122
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 6 cut(s) 659, 709, 905, 1019, 1193, 1282
TaiI ACGT 2 cut(s) 120, 1417
TaqI TCGA 4 cut(s) 167, 558, 711, 1093
TasI AATT 8 cut(s) 59, 275, 594, 752, 785, 1034, 1088, 1149
TatI WGTACW 2 cut(s) 301, 1183
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 169, 962
Tru1I TTAA 5 cut(s) 306, 483, 605, 779, 809
Tru9I TTAA 5 cut(s) 306, 483, 605, 779, 809
TscAI CASTG 6 cut(s) 151, 271, 534, 910, 1198, 1334
TseFI GTSAC 6 cut(s) 453, 574, 881, 1118, 1267, 1276
TseI GCWGC 3 cut(s) 518, 651, 1366
Tsp45I GTSAC 6 cut(s) 453, 574, 881, 1118, 1267, 1276
TspDTI ATGAA 7 cut(s) 110, 204, 330, 345, 522, 525, 1160
TspRI CASTG 6 cut(s) 151, 271, 534, 910, 1198, 1334
Vha464I CTTAAG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 107
XagI CCTNNNNNAGG 1 cut(s) 854
XapI RAATTY 4 cut(s) 59, 275, 752, 1088
XceI RCATGY 4 cut(s) 988, 1063, 1162, 1235
XspI CTAG 3 cut(s) 546, 764, 1004
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.