Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002790

Physical Location & Seq

Genomic Coordinates Forward (+)

32629085 .. 32630697

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG298300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGAAGCCCAAGGTTGAAGAAACTGAGAATGTGATTTTGGACTCAAGAGAGAAGATTGAGTTCTATTGCACGAAAATGCAGGAACTTGATACATTCTACAACGATCTGAGGGATCCTTCTGCTTTTTCTTATAGTGGATCTATATTTGATTGGCTTAGAAATTCAAGAGATGATGCTCTTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-SNAP50_C

Protein Analysis

62

Amino Acids

7.4

Weight (kDa)

4.62

Isoelectric Point (pI)

70.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28560 AT1G28560 AT1G28560
fragaria_vesca	FvH4_6g39210
malus_domestica	MD17G1131000.v1.1
prunus_persica	Prupe.3G183500_v2.0.a1 Prupe.3G183500_v2.0.a1 Prupe.3G183500_v2.0.a1
pyrus_communis	pycom16g05160 pycom16g05170 pycom17g12360
rosa_chinensis	RchiOBHm_Chr2g0153021 RchiOBHm_Chr6g0271881 RchiOBHm_Chr6g0271891 RchiOBHm_Chr6g0271991 RchiOBHm_Chr7g0217251 RchiOBHm_Chr7g0230211
rosa_laevigata	RLG00000001509
rosa_multiflora	Rmu_co8265699.1_g000001 Rmu_sc0002822.1_g000021 Rmu_sc0004110.1_g000009
rosa_roxburghii	Rroxscaffold_2G00095280
rosa_rugosa	Rorug02G0436800 Rorug07G0260000
rosa_samantha	Rh2BG510300 Rh2CG485300 Rh2DG521800 Rh6BG185300 Rh7AG298300 Rh7AG306600 Rh7AG409100 Rh7BG286500 Rh7BG388900 Rh7CG325600 Rh7CG427800 Rh7DG406900
rosa_wichuraiana	Rw0G018570 Rw0G022600 Rw2G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	107, 120, 145
AcsI	RAATTY	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	17, 165
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AlwI	GGATC	3 cut(s)	107, 120, 145
ApoI	RAATTY	1 cut(s)	160
BamHI	GGATCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	15, 98
Bsp143I	GATC	3 cut(s)	103, 112, 137
BspCNI	CTCAG	2 cut(s)	16, 99
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	3 cut(s)	107, 120, 145
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	3 cut(s)	103, 112, 137
BssT1I	CCWWGG	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	24, 107, 155
BstKTI	GATC	3 cut(s)	106, 115, 140
BstMBI	GATC	3 cut(s)	103, 112, 137
BstX2I	RGATCY	2 cut(s)	112, 137
BstYI	RGATCY	2 cut(s)	112, 137
CviJI	RGCY	2 cut(s)	7, 154
CviKI_1	RGCY	2 cut(s)	7, 154
DdeI	CTNAG	3 cut(s)	24, 107, 155
DpnI	GATC	3 cut(s)	105, 114, 139
DpnII	GATC	3 cut(s)	103, 112, 137
Eco130I	CCWWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaiI	YATR	2 cut(s)	132, 143
FspEI	CC	9 cut(s)	21, 22, 23, 65, 94, 95, 120, 129, 136
HinfI	GANTC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	2 cut(s)	45, 165
HpyAV	CCTTC	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	69, 79
HpyF3I	CTNAG	3 cut(s)	24, 107, 155
Kzo9I	GATC	3 cut(s)	103, 112, 137
LpnPI	CCDG	1 cut(s)	65
LweI	GCATC	1 cut(s)	163
MalI	GATC	3 cut(s)	105, 114, 139
MboI	GATC	3 cut(s)	103, 112, 137
MboII	GAAGA	2 cut(s)	29, 64
MflI	RGATCY	2 cut(s)	112, 137
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	1 cut(s)	102
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	74
NdeII	GATC	3 cut(s)	103, 112, 137
NlaIV	GGNNCC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	114
PsuI	RGATCY	2 cut(s)	112, 137
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	103, 112, 137
SchI	GAGTC	1 cut(s)	35
SetI	ASST	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	163
SgeI	CNNG	6 cut(s)	22, 57, 82, 92, 98, 177
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	9
TasI	AATT	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.