Rh2BG510300

snRNA-activating protein complex

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
71713692 .. 71721182
7491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG510300.1

Sequence Viewer

Length: 1632 bp
ATGGAAGACTATGTTGAAGACGCTAATGGCTTTGCTCACGGTTCCGAGGAGGTGGAGGAGCTCACGGTTCCCAGAGGTGGGCCCCTCTACGTTGAGAATCTGACCGGTCCTCTCACCAGTGTCGGTCTCTTCCAGTCTTCTGTTCTCCAAGAGCTTCAGGATTTGGAGGTGGAATTGGCTTCGGGTTCTTCCCAAGTCTGCGACGAGGAAGATATCTCGGTGGATGAGCTTAAGATCATGAGTGAGGAGGAGTTGGTGGATATGGCTATTAAGGAAGTACTTAAGGACGATGAATGTGTTCCCAAATCTTCACCTGTTTCAGAAGAGCCCTCCGATGAAGGGATAGCAGAACATCCTGAGACACCAAATGGTAAAATCTGTTATACGAAGTCAAGAAAAAGAAAAGGAATGAAGGATGATGAAGATCCTTCCGAACTTCCATCTATTCCAGAGGAACCCCCTTCTGAAAGGAGAGGAGACAATCCTGAGACATCAAATGAAAAATATTATATAACGTATTCAAGGAGAAGAAGAAGAATATTGAAGGACGACGAAGGTGCTCTAAATGTTTTACCGATTTCAGAAAAGCCTCTCAAGGAAAGGAGACCAGATGATCCTCATAAATCAGAACTTAGATCATGCAAAGGAAAAGAAGTGAAGACAAATTATCTTGCTATTAAGGATGATGAAGATGCCCTCAATCTTTTGTCTATTCCGGAAGAGCCCTTTAATGAAAGGAGAGCAGATGATCCAGACACGTCAAATCATAAAATTTGTGTAAGGAAATCAAGGAAGAGAAAAGGTATGAAGGCAAATAGTCATTCTCTTGAGAGAAATGATACGGAGAAGAAGGCTTTTTGGTCACAAATTGCAAAGAAGGTTGAGTATATTAAAAAAATCAAAGAAAAGCAGGATGAGGATAAAGCAGCTGTGACACTACATTCATTCAACCGTAGTTTGAAAATCAAGGGTCGTGCCAGTGCATCCTCAGGGACAGCTGAAAGGATGAAACCCCTCAGATCTGCAAGTGCAGCAGTGAAGGTAAAGTTATCCAGCATTCAGGGTTGCATACCTGTACGCCATCCAGAAGTTGCTCTTTCAATTGAGGTTTATCATAATGTCCGAAACTGGGTCAAGACCCAAGAATTCTTGGTCCTAGGACAACAAACCTTGACTGAGTTGAGGGATAAGATATACTGTTTAACAGACAAGGTGATGGAAACAGATGGCCAGCATAATCATTCAGGATATTTCCTCATAGAAGATACATTCTACAACGATCTGAGGGATCCTTCTGCAATAGATTATAGTGAACCAATATTTGATTGGCTTAGAAATTCAAAAGATGATGCTTTAAAAAAATGGGAGTGTATTTTAGCTGGAAAAATGCAAAAGCACAAAAAAGCAGTTGTAGGCGACATAACTGGCTCAAAATTGCCTCGTTTCCAAGCTGCTGATATGCACAAGACACAGTTTTGCAACTTGAAATTTCAACTTGGTGCTGGATATCTATACTGTCACCAGGTACACCCCTCTATTGCTTTTTCATCCCCTATATTTTGTGTCTTACACAATTTGCTCTATGTGAATATCTTCTTGATTGATGCATTTTATGTTCTATTTGACTGCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

543

Amino Acids

61.73

Weight (kDa)

5.61

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 381 - 508 7.5e-32 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 715
AclWI GGATC 5 cut(s) 419, 608, 743, 1283, 1296
AcoI YGGCCR 1 cut(s) 1228
AcsI RAATTY 4 cut(s) 771, 1145, 1336, 1487
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 3 cut(s) 279, 1077, 1527
AfiI CCNNNNNNNGG 4 cut(s) 77, 78, 339, 1129
AflII CTTAAG 2 cut(s) 230, 281
AflIII ACRYGT 1 cut(s) 756
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 9 cut(s) 17, 522, 544, 949, 961, 1101, 1341, 1486, 1493
AjiI CACGTC 1 cut(s) 759
AjnI CCWGG 1 cut(s) 1521
AluBI AGCT 7 cut(s) 61, 154, 229, 929, 998, 1379, 1451
AluI AGCT 7 cut(s) 61, 154, 229, 929, 998, 1379, 1451
Alw21I GWGCWC 2 cut(s) 63, 562
Alw26I GTCTC 5 cut(s) 131, 353, 471, 482, 598
AlwI GGATC 5 cut(s) 419, 608, 743, 1283, 1296
Aor13HI TCCGGA 1 cut(s) 715
AoxI GGCC 2 cut(s) 80, 1228
ApaI GGGCCC 1 cut(s) 84
ApeKI GCWGC 3 cut(s) 926, 1031, 1451
ApoI RAATTY 4 cut(s) 771, 1145, 1336, 1487
AsiGI ACCGGT 1 cut(s) 104
Asp700I GAANNNNTTC 2 cut(s) 297, 1592
AspA2I CCTAGG 1 cut(s) 1156
AspS9I GGNCC 4 cut(s) 80, 81, 107, 1153
AsuHPI GGTGA 4 cut(s) 106, 303, 1225, 1511
AvaII GGWCC 2 cut(s) 107, 1153
AvrII CCTAGG 1 cut(s) 1156
AxyI CCTNAGG 1 cut(s) 988
BaeGI GKGCMC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 1230
BamHI GGATCC 1 cut(s) 1288
BanII GRGCYC 4 cut(s) 63, 84, 330, 726
BbsI GAAGAC 4 cut(s) 12, 24, 129, 665
Bbv12I GWGCWC 2 cut(s) 63, 562
BbvI GCAGC 3 cut(s) 938, 1043, 1438
BccI CCATC 4 cut(s) 448, 1089, 1210, 1220
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 1 cut(s) 1523
BcoDI GTCTC 5 cut(s) 131, 353, 471, 482, 598
BfaI CTAG 1 cut(s) 1157
BfrI CTTAAG 2 cut(s) 230, 281
BglII AGATCT 1 cut(s) 1019
BisI GCNGC 3 cut(s) 927, 1032, 1452
BlnI CCTAGG 1 cut(s) 1156
BlsI GCNGC 3 cut(s) 928, 1033, 1453
BmcAI AGTACT 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 1523
Bme18I GGWCC 2 cut(s) 107, 1153
BmgBI CACGTC 1 cut(s) 759
BmgT120I GGNCC 4 cut(s) 80, 81, 107, 1153
BmiI GGNNCC 6 cut(s) 43, 69, 82, 83, 456, 1290
BmrFI CCNGG 1 cut(s) 1523
BmrI ACTGGG 1 cut(s) 1138
BmsI GCATC 4 cut(s) 682, 992, 1339, 1594
BmuI ACTGGG 1 cut(s) 1138
BpiI GAAGAC 4 cut(s) 12, 24, 129, 665
BpuEI CTTGAG 2 cut(s) 578, 848
BsaBI GATNNNNATC 1 cut(s) 423
BsaI GGTCTC 2 cut(s) 131, 598
BsaJI CCNNGG 2 cut(s) 45, 1156
BsaWI WCCGGW 2 cut(s) 104, 715
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 78, 339, 1129
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 5 cut(s) 117, 133, 978, 1133, 1429
Bse21I CCTNAGG 1 cut(s) 988
Bse8I GATNNNNATC 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 715
BseBI CCWGG 1 cut(s) 1523
BseDI CCNNGG 2 cut(s) 45, 1156
BseGI GGATG 9 cut(s) 229, 352, 421, 688, 919, 983, 1011, 1081, 1547
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 4 cut(s) 77, 78, 339, 1129
BseMII CTCAG 6 cut(s) 348, 477, 1002, 1030, 1167, 1274
BseNI ACTGG 5 cut(s) 117, 133, 978, 1133, 1429
BseRI GAGGAG 5 cut(s) 62, 71, 260, 263, 489
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 3 cut(s) 938, 1043, 1438
BsgI GTGCAG 1 cut(s) 1050
BshFI GGCC 2 cut(s) 82, 1230
BshTI ACCGGT 1 cut(s) 104
BsiHKAI GWGCWC 2 cut(s) 63, 562
BsiSI CCGG 2 cut(s) 105, 716
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 4 cut(s) 77, 78, 339, 1129
BsmAI GTCTC 5 cut(s) 131, 353, 471, 482, 598
BsmFI GGGAC 1 cut(s) 1006
BsmI GAATGC 1 cut(s) 1056
BsnI GGCC 2 cut(s) 82, 1230
Bso31I GGTCTC 2 cut(s) 131, 598
Bsp120I GGGCCC 1 cut(s) 80
Bsp1286I GDGCHC 5 cut(s) 63, 84, 330, 562, 726
Bsp13I TCCGGA 1 cut(s) 715
Bsp143I GATC 8 cut(s) 234, 424, 613, 635, 748, 1019, 1279, 1288
BspANI GGCC 2 cut(s) 82, 1230
BspCNI CTCAG 6 cut(s) 349, 478, 1001, 1029, 1168, 1275
BspEI TCCGGA 1 cut(s) 715
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 6 cut(s) 43, 69, 82, 83, 456, 1290
BspPI GGATC 5 cut(s) 419, 608, 743, 1283, 1296
BspQI GCTCTTC 2 cut(s) 318, 714
BspTI CTTAAG 2 cut(s) 230, 281
BspTNI GGTCTC 2 cut(s) 131, 598
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 5 cut(s) 117, 133, 978, 1133, 1429
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 45, 1156
BssMI GATC 8 cut(s) 234, 424, 613, 635, 748, 1019, 1279, 1288
BssT1I CCWWGG 1 cut(s) 1156
Bst2UI CCWGG 1 cut(s) 1523
Bst4CI ACNGT 6 cut(s) 41, 67, 953, 1199, 1473, 1517
Bst6I CTCTTC 4 cut(s) 134, 318, 714, 788
BstAFI CTTAAG 2 cut(s) 230, 281
BstC8I GCNNGC 1 cut(s) 1232
BstDEI CTNAG 8 cut(s) 357, 486, 632, 988, 1016, 1176, 1283, 1331
BstF5I GGATG 9 cut(s) 229, 352, 421, 688, 919, 983, 1011, 1081, 1547
BstKTI GATC 8 cut(s) 237, 427, 616, 638, 751, 1022, 1282, 1291
BstMAI GTCTC 5 cut(s) 131, 353, 471, 482, 598
BstMBI GATC 8 cut(s) 234, 424, 613, 635, 748, 1019, 1279, 1288
BstMWI GCNNNNNNNGC 1 cut(s) 1031
BstNI CCWGG 1 cut(s) 1523
BstSCI CCNGG 1 cut(s) 1521
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 938, 1043, 1438
BstV2I GAAGAC 4 cut(s) 12, 24, 129, 665
BstX2I RGATCY 3 cut(s) 424, 1019, 1288
BstYI RGATCY 3 cut(s) 424, 1019, 1288
Bsu36I CCTNAGG 1 cut(s) 988
BsuRI GGCC 2 cut(s) 82, 1230
BtrI CACGTC 1 cut(s) 759
BtsCI GGATG 9 cut(s) 229, 352, 421, 688, 919, 983, 1011, 1081, 1547
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 3 cut(s) 124, 985, 1041
Cac8I GCNNGC 1 cut(s) 1232
CciI TCATGA 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 4 cut(s) 80, 81, 107, 1153
CseI GACGC 1 cut(s) 29
CsiI ACCWGGT 1 cut(s) 1521
Csp6I GTAC 3 cut(s) 278, 1076, 1526
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 2 cut(s) 238, 639
CviQI GTAC 3 cut(s) 278, 1076, 1526
DdeI CTNAG 8 cut(s) 357, 486, 632, 988, 1016, 1176, 1283, 1331
DpnI GATC 8 cut(s) 236, 426, 615, 637, 750, 1021, 1281, 1290
DpnII GATC 8 cut(s) 234, 424, 613, 635, 748, 1019, 1279, 1288
DraI TTTAAA 1 cut(s) 1356
EaeI YGGCCR 1 cut(s) 1228
Eam1104I CTCTTC 4 cut(s) 134, 318, 714, 788
EarI CTCTTC 4 cut(s) 134, 318, 714, 788
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 1156
Eco24I GRGCYC 4 cut(s) 63, 84, 330, 726
Eco31I GGTCTC 2 cut(s) 131, 598
Eco32I GATATC 2 cut(s) 214, 1508
Eco47I GGWCC 2 cut(s) 107, 1153
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 988
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 1145
EcoRII CCWGG 1 cut(s) 1521
EcoRV GATATC 2 cut(s) 214, 1508
EcoT14I CCWWGG 1 cut(s) 1156
EcoT22I ATGCAT 1 cut(s) 1609
EcoT38I GRGCYC 4 cut(s) 63, 84, 330, 726
ErhI CCWWGG 1 cut(s) 1156
FaeI CATG 2 cut(s) 241, 642
FalI AAGNNNNNCTT 2 cut(s) 1080, 1112
FaqI GGGAC 1 cut(s) 1006
FatI CATG 2 cut(s) 237, 638
Fnu4HI GCNGC 3 cut(s) 927, 1032, 1452
FokI GGATG 9 cut(s) 236, 339, 428, 695, 926, 970, 1018, 1068, 1534
FriOI GRGCYC 4 cut(s) 63, 84, 330, 726
Fsp4HI GCNGC 3 cut(s) 927, 1032, 1452
FspBI CTAG 1 cut(s) 1157
GluI GCNGC 3 cut(s) 927, 1032, 1452
HaeIII GGCC 2 cut(s) 82, 1230
HapII CCGG 2 cut(s) 105, 716
HgaI GACGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 241, 642
HinfI GANTC 1 cut(s) 97
HpaII CCGG 2 cut(s) 105, 716
HphI GGTGA 4 cut(s) 106, 303, 1225, 1511
Hpy166II GTNNAC 2 cut(s) 1313, 1528
Hpy8I GTNNAC 2 cut(s) 1313, 1528
Hpy99I CGWCG 2 cut(s) 206, 554
HpyCH4III ACNGT 6 cut(s) 41, 67, 953, 1199, 1473, 1517
HpyCH4IV ACGT 3 cut(s) 90, 515, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 1031
HpyF3I CTNAG 8 cut(s) 357, 486, 632, 988, 1016, 1176, 1283, 1331
HpySE526I ACGT 3 cut(s) 90, 515, 758
Hsp92II CATG 2 cut(s) 241, 642
Kpn2I TCCGGA 1 cut(s) 715
Kzo9I GATC 8 cut(s) 234, 424, 613, 635, 748, 1019, 1279, 1288
LguI GCTCTTC 2 cut(s) 318, 714
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 3 cut(s) 938, 1043, 1438
LweI GCATC 4 cut(s) 682, 992, 1339, 1594
MabI ACCWGGT 1 cut(s) 1521
MaeI CTAG 1 cut(s) 1157
MaeII ACGT 3 cut(s) 90, 515, 758
MaeIII GTNAC 3 cut(s) 861, 931, 1517
MalI GATC 8 cut(s) 236, 426, 615, 637, 750, 1021, 1281, 1290
MboI GATC 8 cut(s) 234, 424, 613, 635, 748, 1019, 1279, 1288
MfeI CAATTG 1 cut(s) 1101
MflI RGATCY 3 cut(s) 424, 1019, 1288
MhlI GDGCHC 5 cut(s) 63, 84, 330, 562, 726
MlsI TGGCCA 1 cut(s) 1230
MluNI TGGCCA 1 cut(s) 1230
Mox20I TGGCCA 1 cut(s) 1230
Mph1103I ATGCAT 1 cut(s) 1609
MroI TCCGGA 1 cut(s) 715
MroXI GAANNNNTTC 2 cut(s) 297, 1592
MscI TGGCCA 1 cut(s) 1230
MseI TTAA 8 cut(s) 231, 270, 282, 678, 729, 891, 1202, 1355
Msp20I TGGCCA 1 cut(s) 1230
MspA1I CMGCKG 2 cut(s) 929, 998
MspCI CTTAAG 2 cut(s) 230, 281
MspI CCGG 2 cut(s) 105, 716
MspR9I CCNGG 1 cut(s) 1523
MunI CAATTG 1 cut(s) 1101
Mva1269I GAATGC 1 cut(s) 1056
MvaI CCWGG 1 cut(s) 1523
MwoI GCNNNNNNNGC 1 cut(s) 1031
NdeII GATC 8 cut(s) 234, 424, 613, 635, 748, 1019, 1279, 1288
NlaIII CATG 2 cut(s) 241, 642
NlaIV GGNNCC 6 cut(s) 43, 69, 82, 83, 456, 1290
NmuCI GTSAC 3 cut(s) 861, 931, 1517
NsiI ATGCAT 1 cut(s) 1609
PagI TCATGA 1 cut(s) 237
PciSI GCTCTTC 2 cut(s) 318, 714
PctI GAATGC 1 cut(s) 1056
PdmI GAANNNNTTC 2 cut(s) 297, 1592
PfeI GAWTC 1 cut(s) 97
PinAI ACCGGT 1 cut(s) 104
PkrI GCNGC 3 cut(s) 928, 1033, 1453
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 1521
PspGI CCWGG 1 cut(s) 1521
PspN4I GGNNCC 6 cut(s) 43, 69, 82, 83, 456, 1290
PspOMI GGGCCC 1 cut(s) 80
PspPI GGNCC 4 cut(s) 80, 81, 107, 1153
PsuI RGATCY 3 cut(s) 424, 1019, 1288
PvuII CAGCTG 2 cut(s) 929, 998
RsaI GTAC 3 cut(s) 279, 1077, 1527
RsaNI GTAC 3 cut(s) 278, 1076, 1526
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 2 cut(s) 318, 714
SaqAI TTAA 8 cut(s) 231, 270, 282, 678, 729, 891, 1202, 1355
SatI GCNGC 3 cut(s) 927, 1032, 1452
Sau3AI GATC 8 cut(s) 234, 424, 613, 635, 748, 1019, 1279, 1288
Sau96I GGNCC 4 cut(s) 80, 81, 107, 1153
ScaI AGTACT 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 1523
SduI GDGCHC 5 cut(s) 63, 84, 330, 562, 726
SexAI ACCWGGT 1 cut(s) 1521
SfaNI GCATC 4 cut(s) 682, 992, 1339, 1594
SinI GGWCC 2 cut(s) 107, 1153
SmlI CTYRAG 4 cut(s) 230, 281, 593, 827
SmoI CTYRAG 4 cut(s) 230, 281, 593, 827
SspI AATATT 3 cut(s) 506, 540, 1320
SspMI CTAG 1 cut(s) 1157
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 1521
StyI CCWWGG 1 cut(s) 1156
TaaI ACNGT 6 cut(s) 41, 67, 953, 1199, 1473, 1517
TaiI ACGT 3 cut(s) 93, 518, 761
TaqII GACCGA 1 cut(s) 113
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 8 cut(s) 231, 270, 282, 678, 729, 891, 1202, 1355
Tru9I TTAA 8 cut(s) 231, 270, 282, 678, 729, 891, 1202, 1355
TscAI CASTG 3 cut(s) 124, 985, 1041
TseFI GTSAC 3 cut(s) 861, 931, 1517
TseI GCWGC 3 cut(s) 926, 1031, 1451
Tsp45I GTSAC 3 cut(s) 861, 931, 1517
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 3 cut(s) 124, 985, 1041
Vha464I CTTAAG 2 cut(s) 230, 281
VpaK11BI GGWCC 2 cut(s) 107, 1153
XapI RAATTY 4 cut(s) 771, 1145, 1336, 1487
XcmI CCANNNNNNNNNTGG 1 cut(s) 1323
XmaJI CCTAGG 1 cut(s) 1156
XmnI GAANNNNTTC 2 cut(s) 297, 1592
XspI CTAG 1 cut(s) 1157
ZrmI AGTACT 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 1609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.