Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005624

Physical Location & Seq

Genomic Coordinates Forward (+)

12237547 .. 12238710

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAAAACACTTACGTTGGCCAACGAGATTACCGCTTCAACGTTAACCAGTTGTCCTACAGAGGCATTCGTCGGAGGAAATGGGGCAAATGGGTATCGGAGATCCGAGAACCCGGTAAGAAAACAAGGATTTGGCTTGGAAGCTACGAGACGGCCGAGATGGCTGCAGCGGCCTACGATGCTGCGGCTCTTCACCTCCGAGGACGTGGGACCAATCTCAACTTTCCGGAACTCGTCGACAGTTTTCCTCGGCCGGAAAGCTCTAGTTCGGAGCACATTCAAGCGGCTGCACAAGATGCAGCACTTATGTTTAAACCAGGTAGGTTGAGTGAACCAGCTCTCGAGTCTGGTCAAGGACTTTCTCGAGTAGGATTGTCTCCGGATCAGATTCAAGCGATTAATGAGTCTCCATTAGACTCGCCGAGGATGGGGTGGATGCAGGATTTGGAAGTTGCTGACTACGAAGAATTATACGGACAATTTTTTGGTCAGCACGATAGGGATGAGTTTTTTGAAATGCAGCAATTTCAGTCCATATGGAATTCTAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

184

Amino Acids

21.09

Weight (kDa)

5.15

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	20 - 68	1.1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33760
fragaria_vesca	FvH4_5g33240
malus_domestica	MD15G1396500.v1.1
prunus_persica	Prupe.1G545400_v2.0.a1
pyrus_communis	pycom15g35660
rosa_chinensis	RchiOBHm_Chr7g0231641 RchiOBHm_Chr7g0231741 RchiOBHm_Chr7g0231821 RchiOBHm_Chr7g0231881 RchiOBHm_Chr7g0231901 RchiOBHm_Chr7g0231921 RchiOBHm_Chr7g0232011 RchiOBHm_Chr7g0232021
rosa_laevigata	RLG00000001403
rosa_multiflora	Rmu_sc0003063.1_g000014 Rmu_sc0004618.1_g000040
rosa_roxburghii	Rroxscaffold_3G00228920 Rroxscaffold_3G00228940 Rroxscaffold_3G00228980
rosa_rugosa	Rorug07G0267800 Rorug07G0267900 Rorug07G0268300
rosa_samantha	Rh7AG422500 Rh7BG396800 Rh7BG396900 Rh7CG442700 Rh7DG414800
rosa_wichuraiana	Rw7G034830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AccIII	TCCGGA	2 cut(s)	226, 379
AciI	CCGC	4 cut(s)	34, 170, 185, 284
AclI	AACGTT	1 cut(s)	42
AclWI	GGATC	2 cut(s)	97, 390
AcoI	YGGCCR	3 cut(s)	19, 153, 251
AcsI	RAATTY	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	40, 281, 392, 515
AjiI	CACGTC	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	3 cut(s)	144, 261, 338
AluI	AGCT	3 cut(s)	144, 261, 338
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	143, 381, 411
AlwI	GGATC	2 cut(s)	97, 390
Ama87I	CYCGRG	2 cut(s)	341, 363
Aor13HI	TCCGGA	2 cut(s)	226, 379
AoxI	GGCC	4 cut(s)	19, 153, 171, 251
ApeKI	GCWGC	6 cut(s)	164, 167, 182, 287, 299, 520
ApoI	RAATTY	1 cut(s)	541
AseI	ATTAAT	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	2 cut(s)	341, 363
AvaII	GGWCC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	6 cut(s)	151, 169, 179, 274, 311, 532
BccI	CCATC	2 cut(s)	154, 421
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	143, 381, 411
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	58, 165
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	9 cut(s)	165, 168, 171, 183, 186, 285, 288, 300, 521
BlsI	GCNGC	9 cut(s)	166, 169, 172, 184, 187, 286, 289, 301, 522
Bme1390I	CCNGG	2 cut(s)	114, 318
Bme18I	GGWCC	1 cut(s)	210
BmeT110I	CYCGRG	2 cut(s)	341, 363
BmgBI	CACGTC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	114, 318
BmsI	GCATC	3 cut(s)	169, 286, 426
BpuMI	CCSGG	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	199, 248, 422
BsaWI	WCCGGW	2 cut(s)	226, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	49
BseAI	TCCGGA	2 cut(s)	226, 379
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	199, 248, 422
BseGI	GGATG	3 cut(s)	432, 441, 508
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	49
BseX3I	CGGCCG	2 cut(s)	153, 251
BseXI	GCAGC	6 cut(s)	151, 169, 179, 274, 311, 532
BsgI	GTGCAG	1 cut(s)	273
Bsh1285I	CGRYCG	2 cut(s)	156, 254
BshFI	GGCC	4 cut(s)	21, 155, 173, 253
BsiEI	CGRYCG	2 cut(s)	156, 254
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	2 cut(s)	341, 363
BsiSI	CCGG	4 cut(s)	114, 227, 254, 380
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	3 cut(s)	143, 381, 411
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	21, 155, 173, 253
BsoBI	CYCGRG	2 cut(s)	341, 363
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp13I	TCCGGA	2 cut(s)	226, 379
Bsp143I	GATC	2 cut(s)	102, 382
BspACI	CCGC	4 cut(s)	34, 170, 185, 284
BspANI	GGCC	4 cut(s)	21, 155, 173, 253
BspEI	TCCGGA	2 cut(s)	226, 379
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	2 cut(s)	97, 390
BspQI	GCTCTTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	199, 248, 422
BssMI	GATC	2 cut(s)	102, 382
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstF5I	GGATG	3 cut(s)	432, 441, 508
BstKTI	GATC	2 cut(s)	105, 385
BstMAI	GTCTC	3 cut(s)	143, 381, 411
BstMBI	GATC	2 cut(s)	102, 382
BstMCI	CGRYCG	2 cut(s)	156, 254
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 179, 296
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	112, 316
BstSFI	CTRYAG	2 cut(s)	58, 165
BstV1I	GCAGC	6 cut(s)	151, 169, 179, 274, 311, 532
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BstZI	CGGCCG	2 cut(s)	153, 251
BsuRI	GGCC	4 cut(s)	21, 155, 173, 253
BtrI	CACGTC	1 cut(s)	206
BtsCI	GGATG	3 cut(s)	432, 441, 508
Cfr13I	GGNCC	1 cut(s)	210
CsiI	ACCWGGT	1 cut(s)	316
DpnI	GATC	2 cut(s)	104, 384
DpnII	GATC	2 cut(s)	102, 382
DraI	TTTAAA	1 cut(s)	313
EaeI	YGGCCR	3 cut(s)	19, 153, 251
EagI	CGGCCG	2 cut(s)	153, 251
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EclXI	CGGCCG	2 cut(s)	153, 251
Eco47I	GGWCC	1 cut(s)	210
Eco52I	CGGCCG	2 cut(s)	153, 251
Eco88I	CYCGRG	2 cut(s)	341, 363
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	143
FaiI	YATR	4 cut(s)	308, 472, 536, 538
FaqI	GGGAC	1 cut(s)	223
FauNDI	CATATG	1 cut(s)	536
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	9 cut(s)	165, 168, 171, 183, 186, 285, 288, 300, 521
FokI	GGATG	3 cut(s)	439, 448, 515
Fsp4HI	GCNGC	9 cut(s)	165, 168, 171, 183, 186, 285, 288, 300, 521
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	9 cut(s)	165, 168, 171, 183, 186, 285, 288, 300, 521
HaeIII	GGCC	4 cut(s)	21, 155, 173, 253
HapII	CCGG	4 cut(s)	114, 227, 254, 380
HincII	GTYRAC	2 cut(s)	46, 238
HindII	GTYRAC	2 cut(s)	46, 238
HinfI	GANTC	4 cut(s)	344, 388, 404, 416
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	4 cut(s)	114, 227, 254, 380
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	46, 238, 332
Hpy188I	TCNGA	6 cut(s)	75, 100, 107, 200, 271, 387
Hpy188III	TCNNGA	4 cut(s)	227, 341, 363, 380
Hpy8I	GTNNAC	3 cut(s)	46, 238, 332
Hpy99I	CGWCG	2 cut(s)	75, 239
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	3 cut(s)	15, 42, 205
HpyCH4V	TGCA	5 cut(s)	167, 290, 299, 439, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 179, 296
HpySE526I	ACGT	3 cut(s)	15, 42, 205
Kpn2I	TCCGGA	2 cut(s)	226, 379
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	102, 382
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	6 cut(s)	151, 169, 179, 274, 311, 532
LweI	GCATC	3 cut(s)	169, 286, 426
MabI	ACCWGGT	1 cut(s)	316
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	3 cut(s)	15, 42, 205
MalI	GATC	2 cut(s)	104, 384
MboI	GATC	2 cut(s)	102, 382
MboII	GAAGA	2 cut(s)	182, 476
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	5 cut(s)	467, 479, 524, 541, 550
MluNI	TGGCCA	1 cut(s)	21
MlyI	GAGTC	3 cut(s)	353, 410, 413
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	56, 69, 194, 206, 258, 417
Mox20I	TGGCCA	1 cut(s)	21
MroI	TCCGGA	2 cut(s)	226, 379
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	3 cut(s)	45, 312, 399
Msp20I	TGGCCA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	4 cut(s)	114, 227, 254, 380
MspR9I	CCNGG	2 cut(s)	114, 318
MssI	GTTTAAAC	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 179, 296
NciI	CCSGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	536
NdeII	GATC	2 cut(s)	102, 382
NlaIV	GGNNCC	1 cut(s)	211
NmeAIII	GCCGAG	3 cut(s)	181, 229, 447
PaeR7I	CTCGAG	2 cut(s)	341, 363
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	9 cut(s)	166, 169, 172, 184, 187, 286, 289, 301, 522
PleI	GAGTC	3 cut(s)	352, 410, 412
PmeI	GTTTAAAC	1 cut(s)	313
PpsI	GAGTC	3 cut(s)	352, 410, 412
PshBI	ATTAAT	1 cut(s)	399
Psp1406I	AACGTT	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	102
SalI	GTCGAC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	45, 312, 399
SatI	GCNGC	9 cut(s)	165, 168, 171, 183, 186, 285, 288, 300, 521
Sau3AI	GATC	2 cut(s)	102, 382
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	3 cut(s)	353, 410, 413
ScrFI	CCNGG	2 cut(s)	114, 318
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	9 cut(s)	18, 45, 146, 198, 208, 263, 322, 326, 340
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	3 cut(s)	169, 286, 426
SfcI	CTRYAG	2 cut(s)	58, 165
Sfr274I	CTCGAG	2 cut(s)	341, 363
SinI	GGWCC	1 cut(s)	210
SlaI	CTCGAG	2 cut(s)	341, 363
SmlI	CTYRAG	2 cut(s)	341, 363
SmoI	CTYRAG	2 cut(s)	341, 363
Sse9I	AATT	5 cut(s)	467, 479, 524, 541, 550
SsiI	CCGC	4 cut(s)	34, 170, 185, 284
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	112, 316
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	3 cut(s)	18, 45, 208
TaqI	TCGA	3 cut(s)	237, 342, 364
TasI	AATT	5 cut(s)	467, 479, 524, 541, 550
TauI	GCSGC	3 cut(s)	173, 188, 287
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	3 cut(s)	45, 312, 399
Tru9I	TTAA	3 cut(s)	45, 312, 399
TseI	GCWGC	6 cut(s)	164, 167, 182, 287, 299, 520
TspGWI	ACGGA	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	210
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	541
XhoI	CTCGAG	2 cut(s)	341, 363
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.