Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003063.1

Orthogroup ID

OG0005624

Physical Location & Seq

Genomic Coordinates Reverse (-)

60174 .. 60518

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003063.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggttgatagtcttccgaggccagcgagttcgagtccttcggacgtgcagttggcggctcaaggggcggcaatgaggtttaggagactgccaatggggtcggtttcgacggaggtggctggtggctcgagtggtggcgcggcgccggtgacagtgggactgtcgccgagtcaaattcaggcgattaatgagtcgccgttagactcgcctaagatgtggatgcagtacatgtacatgtctcatcgtgatgaggctttgttttttggggaggacatgccatcgtctatgggtttctatgatgatcatgatgacggtttgcagcatcagtccatttgggactcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

114

Amino Acids

12.3

Weight (kDa)

4.43

Isoelectric Point (pI)

92.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33760
fragaria_vesca	FvH4_5g33240
malus_domestica	MD15G1396500.v1.1
prunus_persica	Prupe.1G545400_v2.0.a1
pyrus_communis	pycom15g35660
rosa_chinensis	RchiOBHm_Chr7g0231641 RchiOBHm_Chr7g0231741 RchiOBHm_Chr7g0231821 RchiOBHm_Chr7g0231881 RchiOBHm_Chr7g0231901 RchiOBHm_Chr7g0231921 RchiOBHm_Chr7g0232011 RchiOBHm_Chr7g0232021
rosa_laevigata	RLG00000001403
rosa_multiflora	Rmu_sc0003063.1_g000014 Rmu_sc0004618.1_g000040
rosa_roxburghii	Rroxscaffold_3G00228920 Rroxscaffold_3G00228940 Rroxscaffold_3G00228980
rosa_rugosa	Rorug07G0267800 Rorug07G0267900 Rorug07G0268300
rosa_samantha	Rh7AG422500 Rh7BG396800 Rh7BG396900 Rh7CG442700 Rh7DG414800
rosa_wichuraiana	Rw7G034830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	1 cut(s)	140
AciI	CCGC	3 cut(s)	56, 68, 140
AcsI	RAATTY	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	227, 233
AflIII	ACRYGT	2 cut(s)	228, 234
AjiI	CACGTC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	79, 243
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	174
AseI	ATTAAT	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	140, 145
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	181
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	79, 243
BfaI	CTAG	1 cut(s)	343
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	4 cut(s)	57, 69, 141, 320
BlsI	GCNGC	4 cut(s)	58, 70, 142, 321
BmeT110I	CYCGRG	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	144
BmsI	GCATC	2 cut(s)	210, 331
BpiI	GAAGAC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	17
Bse118I	RCCGGY	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	171
BsmAI	GTCTC	2 cut(s)	79, 243
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	3 cut(s)	56, 68, 140
BspANI	GGCC	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	145
BsrGI	TGTACA	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	1 cut(s)	143
Bst4CI	ACNGT	3 cut(s)	154, 162, 314
BstACI	GRCGYC	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	2 cut(s)	140, 145
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	79, 243
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	3 cut(s)	232, 238, 277
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	2 cut(s)	140, 145
Cfr10I	RCCGGY	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	226, 232
CviAII	CATG	4 cut(s)	229, 235, 274, 305
CviJI	RGCY	5 cut(s)	22, 59, 119, 126, 254
CviKI_1	RGCY	5 cut(s)	22, 59, 119, 126, 254
CviQI	GTAC	2 cut(s)	226, 232
DdeI	CTNAG	1 cut(s)	210
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	127
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	4 cut(s)	232, 238, 277, 308
FaiI	YATR	6 cut(s)	230, 236, 275, 287, 297, 306
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	4 cut(s)	228, 234, 273, 304
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	57, 69, 141, 320
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	4 cut(s)	57, 69, 141, 320
FspBI	CTAG	1 cut(s)	343
GlaI	GCGC	2 cut(s)	139, 144
GluI	GCNGC	4 cut(s)	57, 69, 141, 320
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	2 cut(s)	140, 145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	232, 238, 277, 308
Hin6I	GCGC	2 cut(s)	138, 143
HinP1I	GCGC	2 cut(s)	138, 143
HinfI	GANTC	5 cut(s)	34, 169, 191, 203, 338
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	18, 43
Hpy188III	TCNNGA	2 cut(s)	245, 305
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	3 cut(s)	154, 162, 314
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	49, 223, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	232, 238, 277, 308
HspAI	GCGC	2 cut(s)	138, 143
KasI	GGCGCC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	301
LpnPI	CCDG	4 cut(s)	36, 105, 159, 164
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	210, 331
MaeI	CTAG	1 cut(s)	343
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	5
MluCI	AATT	1 cut(s)	174
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	5 cut(s)	43, 178, 197, 200, 332
MnlI	CCTC	5 cut(s)	12, 69, 106, 244, 262
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	2 cut(s)	233, 246
MspI	CCGG	1 cut(s)	146
MteI	GCGCNGCGC	1 cut(s)	141
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	65
NarI	GGCGCC	1 cut(s)	143
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	4 cut(s)	232, 238, 277, 308
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	3 cut(s)	232, 238, 277
PaeR7I	CTCGAG	1 cut(s)	127
PagI	TCATGA	1 cut(s)	304
PciI	ACATGT	2 cut(s)	228, 234
PkrI	GCNGC	4 cut(s)	58, 70, 142, 321
PleI	GAGTC	5 cut(s)	42, 177, 197, 199, 332
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	5 cut(s)	42, 177, 197, 199, 332
PscI	ACATGT	2 cut(s)	228, 234
PshBI	ATTAAT	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	144
PspXI	VCTCGAGB	1 cut(s)	127
RsaI	GTAC	2 cut(s)	227, 233
RsaNI	GTAC	2 cut(s)	226, 232
RseI	CAYNNNNRTG	2 cut(s)	233, 246
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	57, 69, 141, 320
Sau3AI	GATC	1 cut(s)	301
SchI	GAGTC	5 cut(s)	43, 178, 197, 200, 332
SetI	ASST	3 cut(s)	48, 80, 117
SfaNI	GCATC	2 cut(s)	210, 331
SfoI	GGCGCC	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	127
SgrAI	CRCCGGYG	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	233, 246
SmlI	CTYRAG	2 cut(s)	60, 127
SmoI	CTYRAG	2 cut(s)	60, 127
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	3 cut(s)	56, 68, 140
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	343
TaaI	ACNGT	3 cut(s)	154, 162, 314
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	32, 107, 128
TasI	AATT	1 cut(s)	174
TatI	WGTACW	2 cut(s)	225, 231
TauI	GCSGC	3 cut(s)	59, 71, 143
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	148
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	159
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	3 cut(s)	232, 238, 277
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.