Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005624

Physical Location & Seq

Genomic Coordinates Forward (+)

55896320 .. 55896475

Gene Structure 156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20793

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGACCCAAGAAATTAATCAAACCCTCCGGGCAGATATGGAGGAAGTACACGAGCCTGCAGTCAAGTACAGAGGCGTACGCAAGCGAAAATGGGGTAAATGGGTGTCCGAAATCCGGGAACCGGGAAAGAAAACCCGGATATGGCTCGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

51

Amino Acids

6.11

Weight (kDa)

10.11

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	22 - 50	3.5e-06	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33760
fragaria_vesca	FvH4_5g33240
malus_domestica	MD15G1396500.v1.1
prunus_persica	Prupe.1G545400_v2.0.a1
pyrus_communis	pycom15g35660
rosa_chinensis	RchiOBHm_Chr7g0231641 RchiOBHm_Chr7g0231741 RchiOBHm_Chr7g0231821 RchiOBHm_Chr7g0231881 RchiOBHm_Chr7g0231901 RchiOBHm_Chr7g0231921 RchiOBHm_Chr7g0232011 RchiOBHm_Chr7g0232021
rosa_laevigata	RLG00000001403
rosa_multiflora	Rmu_sc0003063.1_g000014 Rmu_sc0004618.1_g000040
rosa_roxburghii	Rroxscaffold_3G00228920 Rroxscaffold_3G00228940 Rroxscaffold_3G00228980
rosa_rugosa	Rorug07G0267800 Rorug07G0267900 Rorug07G0268300
rosa_samantha	Rh7AG422500 Rh7BG396800 Rh7BG396900 Rh7CG442700 Rh7DG414800
rosa_wichuraiana	Rw7G034830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	48, 68, 78
AfiI	CCNNNNNNNGG	3 cut(s)	114, 121, 141
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
AseI	ATTAAT	1 cut(s)	15
AsuC2I	CCSGG	4 cut(s)	29, 116, 123, 136
BauI	CACGAG	1 cut(s)	50
BcnI	CCSGG	4 cut(s)	29, 116, 123, 136
BfaI	CTAG	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	57
Bme1390I	CCNGG	4 cut(s)	29, 116, 123, 136
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	4 cut(s)	29, 116, 123, 136
BpuMI	CCSGG	4 cut(s)	29, 116, 123, 136
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 121, 141
BseLI	CCNNNNNNNGG	3 cut(s)	114, 121, 141
BsiSI	CCGG	4 cut(s)	28, 115, 122, 136
BsiWI	CGTACG	1 cut(s)	76
BslI	CCNNNNNNNGG	3 cut(s)	114, 121, 141
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	61
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	57, 83
BstSCI	CCNGG	4 cut(s)	27, 114, 121, 134
BstSFI	CTRYAG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	57, 83
Csp6I	GTAC	3 cut(s)	47, 67, 77
CviJI	RGCY	3 cut(s)	55, 145, 153
CviKI_1	RGCY	3 cut(s)	55, 145, 153
CviQI	GTAC	3 cut(s)	47, 67, 77
FaiI	YATR	2 cut(s)	38, 142
FspBI	CTAG	1 cut(s)	154
HapII	CCGG	4 cut(s)	28, 115, 122, 136
HpaII	CCGG	4 cut(s)	28, 115, 122, 136
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	109, 149
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	59
LpnPI	CCDG	5 cut(s)	41, 69, 128, 135, 149
MaeI	CTAG	1 cut(s)	154
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	3 cut(s)	34, 35, 65
MseI	TTAA	1 cut(s)	15
MspI	CCGG	4 cut(s)	28, 115, 122, 136
MspR9I	CCNGG	4 cut(s)	29, 116, 123, 136
NciI	CCSGG	4 cut(s)	29, 116, 123, 136
NlaIV	GGNNCC	1 cut(s)	120
Pfl23II	CGTACG	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	15
PspLI	CGTACG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	61
RsaI	GTAC	3 cut(s)	48, 68, 78
RsaNI	GTAC	3 cut(s)	47, 67, 77
SaqAI	TTAA	1 cut(s)	15
ScrFI	CCNGG	4 cut(s)	29, 116, 123, 136
SetI	ASST	1 cut(s)	155
SfcI	CTRYAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	154
StyD4I	CCNGG	4 cut(s)	27, 114, 121, 134
TasI	AATT	1 cut(s)	12
TatI	WGTACW	2 cut(s)	46, 66
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
VspI	ATTAAT	1 cut(s)	15
XspI	CTAG	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.