Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005624

Physical Location & Seq

Genomic Coordinates Forward (+)

55896492 .. 55896943

Gene Structure 452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCGCCGCCGCCTACGATGCGGCGGCATTGCACCTCAGAGGACCAGGGGTCCTGTTTAACTTTCCTGAAATGGTTGATAGTCTTCCGAGGCCAGCGAGTTCGAGTCCTTCGGACGTGCAGTTGGCGGCTCAAGGGGCGGCAATGAGGTTTAGGAGACTGCCAATGGGGTCGGTTTCGACGGAGGTGGCTGGTGGCTCGAGTGGTGGCGCGGCGCCGGTGACGGTGGGACTGTCGCCGAGTCAAATTCAGGCGATTAATGAGTCGCCATTGGACTCGCCTAAGATGTGGATGCAGTACATGTACATTTCTCATCGTGATGAGGCTTTGTTTTTTGGGGAGGACATGCCATCGTCTATGGGTTTCTATGATGATCATGATGACGGTTTGCACCATCAGTCCATTTGGGACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

138

Amino Acids

14.78

Weight (kDa)

4.65

Isoelectric Point (pI)

74.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33760
fragaria_vesca	FvH4_5g33240
malus_domestica	MD15G1396500.v1.1
prunus_persica	Prupe.1G545400_v2.0.a1
pyrus_communis	pycom15g35660
rosa_chinensis	RchiOBHm_Chr7g0231641 RchiOBHm_Chr7g0231741 RchiOBHm_Chr7g0231821 RchiOBHm_Chr7g0231881 RchiOBHm_Chr7g0231901 RchiOBHm_Chr7g0231921 RchiOBHm_Chr7g0232011 RchiOBHm_Chr7g0232021
rosa_laevigata	RLG00000001403
rosa_multiflora	Rmu_sc0003063.1_g000014 Rmu_sc0004618.1_g000040
rosa_roxburghii	Rroxscaffold_3G00228920 Rroxscaffold_3G00228940 Rroxscaffold_3G00228980
rosa_rugosa	Rorug07G0267800 Rorug07G0267900 Rorug07G0268300
rosa_samantha	Rh7AG422500 Rh7BG396800 Rh7BG396900 Rh7CG442700 Rh7DG414800
rosa_wichuraiana	Rw7G034830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccII	CGCG	1 cut(s)	212
AciI	CCGC	8 cut(s)	6, 9, 12, 23, 26, 128, 140, 212
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	2 cut(s)	299, 305
AflIII	ACRYGT	1 cut(s)	300
AhdI	GACNNNNNGTC	1 cut(s)	50
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	2 cut(s)	3, 92
ApoI	RAATTY	1 cut(s)	246
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	212, 217
AspS9I	GGNCC	2 cut(s)	44, 52
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	44, 52
BanI	GGYRCC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	77
BccI	CCATC	2 cut(s)	358, 402
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	8 cut(s)	6, 9, 12, 24, 27, 129, 141, 213
BlsI	GCNGC	8 cut(s)	7, 10, 13, 25, 28, 130, 142, 214
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	44, 52
BmeRI	GACNNNNNGTC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	199
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	44, 52
BmiI	GGNNCC	2 cut(s)	53, 216
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	10, 282
BpiI	GAAGAC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	47, 89
Bse118I	RCCGGY	1 cut(s)	217
Bse3DI	GCAATG	2 cut(s)	29, 150
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	47, 89
BseGI	GGATG	1 cut(s)	297
BseMI	GCAATG	2 cut(s)	29, 150
BseMII	CTCAG	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	5, 94
BshNI	GGYRCC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	5, 94
BsoBI	CYCGRG	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	8 cut(s)	6, 9, 12, 23, 26, 128, 140, 212
BspANI	GGCC	2 cut(s)	5, 94
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	53, 216
BspT107I	GGYRCC	1 cut(s)	214
BsrDI	GCAATG	2 cut(s)	29, 150
BsrFI	RCCGGY	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	47, 89
BssMI	GATC	1 cut(s)	373
BssNI	GRCGYC	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	226, 234, 386
BstACI	GRCGYC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	38, 282
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	212, 217
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 137
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	2 cut(s)	304, 349
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	5, 94
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	96
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	2 cut(s)	212, 217
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	44, 52
Csp6I	GTAC	2 cut(s)	298, 304
CviAII	CATG	3 cut(s)	301, 346, 377
CviJI	RGCY	6 cut(s)	5, 94, 131, 191, 198, 326
CviKI_1	RGCY	6 cut(s)	5, 94, 131, 191, 198, 326
CviQI	GTAC	2 cut(s)	298, 304
DdeI	CTNAG	2 cut(s)	38, 282
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
DriI	GACNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	44, 52
Eco88I	CYCGRG	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
FaeI	CATG	3 cut(s)	304, 349, 380
FaiI	YATR	5 cut(s)	302, 347, 359, 369, 378
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	3 cut(s)	300, 345, 376
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 24, 27, 129, 141, 213
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 24, 27, 129, 141, 213
FspBI	CTAG	1 cut(s)	415
GlaI	GCGC	2 cut(s)	211, 216
GluI	GCNGC	8 cut(s)	6, 9, 12, 24, 27, 129, 141, 213
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	5, 94
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	2 cut(s)	212, 217
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	304, 349, 380
Hin6I	GCGC	2 cut(s)	210, 215
HinP1I	GCGC	2 cut(s)	210, 215
HinfI	GANTC	5 cut(s)	106, 241, 263, 275, 410
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	41, 90, 115
Hpy188III	TCNNGA	3 cut(s)	68, 317, 377
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	3 cut(s)	226, 234, 386
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	34, 121, 295, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 137
HpyF3I	CTNAG	2 cut(s)	38, 282
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	304, 349, 380
HspAI	GCGC	2 cut(s)	210, 215
KasI	GGCGCC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	373
LpnPI	CCDG	8 cut(s)	33, 60, 68, 81, 108, 177, 231, 236
LweI	GCATC	2 cut(s)	10, 282
MaeI	CTAG	1 cut(s)	415
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	1 cut(s)	246
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	5 cut(s)	115, 250, 269, 272, 404
MnlI	CCTC	7 cut(s)	35, 47, 84, 141, 178, 316, 334
MseI	TTAA	2 cut(s)	60, 258
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	48
MteI	GCGCNGCGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 137
NarI	GGCGCC	1 cut(s)	215
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	304, 349, 380
NlaIV	GGNNCC	2 cut(s)	53, 216
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	2 cut(s)	304, 349
PaeR7I	CTCGAG	1 cut(s)	199
PagI	TCATGA	1 cut(s)	376
PciI	ACATGT	1 cut(s)	300
PkrI	GCNGC	8 cut(s)	7, 10, 13, 25, 28, 130, 142, 214
PleI	GAGTC	5 cut(s)	114, 249, 269, 271, 404
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	5 cut(s)	114, 249, 269, 271, 404
PpuMI	RGGWCCY	1 cut(s)	52
PscI	ACATGT	1 cut(s)	300
PshBI	ATTAAT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	53, 216
PspPI	GGNCC	2 cut(s)	44, 52
PspPPI	RGGWCCY	1 cut(s)	52
PspXI	VCTCGAGB	1 cut(s)	199
RsaI	GTAC	2 cut(s)	299, 305
RsaNI	GTAC	2 cut(s)	298, 304
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	60, 258
SatI	GCNGC	8 cut(s)	6, 9, 12, 24, 27, 129, 141, 213
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	44, 52
SchI	GAGTC	5 cut(s)	115, 250, 269, 272, 404
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	4 cut(s)	39, 120, 152, 189
SfaNI	GCATC	2 cut(s)	10, 282
SfoI	GGCGCC	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	217
SinI	GGWCC	2 cut(s)	44, 52
SlaI	CTCGAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	132, 199
SmoI	CTYRAG	2 cut(s)	132, 199
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	8 cut(s)	6, 9, 12, 23, 26, 128, 140, 212
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	415
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	226, 234, 386
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	3 cut(s)	104, 179, 200
TasI	AATT	1 cut(s)	246
TatI	WGTACW	2 cut(s)	297, 303
TauI	GCSGC	8 cut(s)	8, 11, 14, 26, 29, 131, 143, 215
Tru1I	TTAA	2 cut(s)	60, 258
Tru9I	TTAA	2 cut(s)	60, 258
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspGWI	ACGGA	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	44, 52
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	2 cut(s)	304, 349
XhoI	CTCGAG	1 cut(s)	199
XspI	CTAG	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.