Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005624

Physical Location & Seq

Genomic Coordinates Forward (+)

55724718 .. 55724990

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAGGTTTAGGAGACTGCCAATGGGGTCGGTTTCGACTGAGGTGGCTGGTGGCTCGAGTGGTGGCGCGGCGCCGGTGACGGTGGGACTATCGCCGAGTCAAATTCAGGCGATTAATGAGTCGCCATTGGACTCGCCTAAGATGTGGATGCAGTACATGTACATGTCTCATCGTGATGAGGCTTTTTTTGTTCAGGAAGACATGCCATCGTCTATGGGTTTCTATGATGATCATGATGATGGTTTGCAGCATCAGTCCATTTGGGACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

90

Amino Acids

10.02

Weight (kDa)

4.5

Isoelectric Point (pI)

100.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33760
fragaria_vesca	FvH4_5g33240
malus_domestica	MD15G1396500.v1.1
prunus_persica	Prupe.1G545400_v2.0.a1
pyrus_communis	pycom15g35660
rosa_chinensis	RchiOBHm_Chr7g0231641 RchiOBHm_Chr7g0231741 RchiOBHm_Chr7g0231821 RchiOBHm_Chr7g0231881 RchiOBHm_Chr7g0231901 RchiOBHm_Chr7g0231921 RchiOBHm_Chr7g0232011 RchiOBHm_Chr7g0232021
rosa_laevigata	RLG00000001403
rosa_multiflora	Rmu_sc0003063.1_g000014 Rmu_sc0004618.1_g000040
rosa_roxburghii	Rroxscaffold_3G00228920 Rroxscaffold_3G00228940 Rroxscaffold_3G00228980
rosa_rugosa	Rorug07G0267800 Rorug07G0267900 Rorug07G0268300
rosa_samantha	Rh7AG422500 Rh7BG396800 Rh7BG396900 Rh7CG442700 Rh7DG414800
rosa_wichuraiana	Rw7G034830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccII	CGCG	1 cut(s)	68
AciI	CCGC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	2 cut(s)	155, 161
AflIII	ACRYGT	2 cut(s)	156, 162
Alw26I	GTCTC	2 cut(s)	7, 171
Ama87I	CYCGRG	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	102
AseI	ATTAAT	1 cut(s)	114
AspLEI	GCGC	2 cut(s)	68, 73
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	2 cut(s)	214, 233
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	7, 171
BfaI	CTAG	1 cut(s)	271
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	2 cut(s)	69, 248
BlsI	GCNGC	2 cut(s)	70, 249
BmeT110I	CYCGRG	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	2 cut(s)	138, 259
BpiI	GAAGAC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	73
BseGI	GGATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	7, 171
BsmFI	GGGAC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	55
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	73
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	39, 138
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	68
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	68, 73
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	2 cut(s)	7, 171
BstMBI	GATC	1 cut(s)	229
BstNSI	RCATGY	3 cut(s)	160, 166, 205
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	153
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	2 cut(s)	68, 73
Cfr10I	RCCGGY	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	154, 160
CviAII	CATG	4 cut(s)	157, 163, 202, 233
CviJI	RGCY	3 cut(s)	47, 54, 182
CviKI_1	RGCY	3 cut(s)	47, 54, 182
CviQI	GTAC	2 cut(s)	154, 160
DdeI	CTNAG	2 cut(s)	39, 138
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	55
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
FaeI	CATG	4 cut(s)	160, 166, 205, 236
FaiI	YATR	6 cut(s)	158, 164, 203, 215, 225, 234
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	4 cut(s)	156, 162, 201, 232
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	69, 248
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	2 cut(s)	69, 248
FspBI	CTAG	1 cut(s)	271
GlaI	GCGC	2 cut(s)	67, 72
GluI	GCNGC	2 cut(s)	69, 248
HaeII	RGCGCY	1 cut(s)	74
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	2 cut(s)	68, 73
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	160, 166, 205, 236
Hin6I	GCGC	2 cut(s)	66, 71
HinP1I	GCGC	2 cut(s)	66, 71
HinfI	GANTC	4 cut(s)	97, 119, 131, 266
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	173, 194, 233
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	151, 247
HpyF3I	CTNAG	2 cut(s)	39, 138
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	160, 166, 205, 236
HspAI	GCGC	2 cut(s)	66, 71
KasI	GGCGCC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	4 cut(s)	33, 87, 92, 179
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	138, 259
MaeI	CTAG	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	209
MluCI	AATT	1 cut(s)	102
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	4 cut(s)	106, 125, 128, 260
MnlI	CCTC	2 cut(s)	34, 172
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	3 cut(s)	161, 174, 237
MspI	CCGG	1 cut(s)	74
MteI	GCGCNGCGC	1 cut(s)	69
MvnI	CGCG	1 cut(s)	68
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	4 cut(s)	160, 166, 205, 236
NlaIV	GGNNCC	1 cut(s)	72
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	3 cut(s)	160, 166, 205
PaeR7I	CTCGAG	1 cut(s)	55
PagI	TCATGA	1 cut(s)	232
PciI	ACATGT	2 cut(s)	156, 162
PkrI	GCNGC	2 cut(s)	70, 249
PleI	GAGTC	4 cut(s)	105, 125, 127, 260
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	4 cut(s)	105, 125, 127, 260
PscI	ACATGT	2 cut(s)	156, 162
PshBI	ATTAAT	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	55
RsaI	GTAC	2 cut(s)	155, 161
RsaNI	GTAC	2 cut(s)	154, 160
RseI	CAYNNNNRTG	3 cut(s)	161, 174, 237
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	69, 248
Sau3AI	GATC	1 cut(s)	229
SchI	GAGTC	4 cut(s)	106, 125, 128, 260
SetI	ASST	2 cut(s)	8, 45
SfaNI	GCATC	2 cut(s)	138, 259
SfoI	GGCGCC	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	55
SgrAI	CRCCGGYG	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	3 cut(s)	161, 174, 237
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	68
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	35, 56
TasI	AATT	1 cut(s)	102
TatI	WGTACW	2 cut(s)	153, 159
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	3 cut(s)	160, 166, 205
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.