Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005624

Physical Location & Seq

Genomic Coordinates Forward (+)

55721426 .. 55721803

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20781

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACCCGAGAAACTAATCAAACCCTCCCGGCAGATATGAAGGAAGCACACGAGCCTGCAGCCAAGTACAGAGGAGTACGCAAGCGAAAATGGGGCAAATGGGTGTCTGAAATCCGCGAGCCAGGAAAGAAAACCCGGATATGGCTAGGAAGCTACGAGGCCCCCGAAATGGCGGCCGCGGCCTACGATGCTGCGGCATTGCACCTCAGAGGACCAGGGGTGATGCTTAACTTTCCTGAAATGGTTGATAGTCTTCCGAGGCTAGAGAGTTCGAGTCCCTCGGACGTGCAGTTGGCGGCTCAAGAGGCGGCAATTAGGGGTGGGTTCGGTTCCGAACGGTTCGATTTTGAGCCTAAACCGAAAACCGAACCGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

125

Amino Acids

13.94

Weight (kDa)

7.99

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	22 - 71	8e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33760
fragaria_vesca	FvH4_5g33240
malus_domestica	MD15G1396500.v1.1
prunus_persica	Prupe.1G545400_v2.0.a1
pyrus_communis	pycom15g35660
rosa_chinensis	RchiOBHm_Chr7g0231641 RchiOBHm_Chr7g0231741 RchiOBHm_Chr7g0231821 RchiOBHm_Chr7g0231881 RchiOBHm_Chr7g0231901 RchiOBHm_Chr7g0231921 RchiOBHm_Chr7g0232011 RchiOBHm_Chr7g0232021
rosa_laevigata	RLG00000001403
rosa_multiflora	Rmu_sc0003063.1_g000014 Rmu_sc0004618.1_g000040
rosa_roxburghii	Rroxscaffold_3G00228920 Rroxscaffold_3G00228940 Rroxscaffold_3G00228980
rosa_rugosa	Rorug07G0267800 Rorug07G0267900 Rorug07G0268300
rosa_samantha	Rh7AG422500 Rh7BG396800 Rh7BG396900 Rh7CG442700 Rh7DG414800
rosa_wichuraiana	Rw7G034830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 179
AciI	CCGC	7 cut(s)	115, 173, 177, 179, 194, 296, 308
AcoI	YGGCCR	1 cut(s)	174
AfaI	GTAC	2 cut(s)	68, 78
AfiI	CCNNNNNNNGG	2 cut(s)	141, 169
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	121, 214
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	3 cut(s)	159, 174, 180
ApeKI	GCWGC	2 cut(s)	59, 191
AspS9I	GGNCC	2 cut(s)	160, 212
AsuC2I	CCSGG	2 cut(s)	29, 136
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	71, 178
BciT130I	CCWGG	2 cut(s)	123, 216
BcnI	CCSGG	2 cut(s)	29, 136
BfaI	CTAG	2 cut(s)	146, 263
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	8 cut(s)	60, 174, 177, 180, 192, 195, 297, 309
BlsI	GCNGC	8 cut(s)	61, 175, 178, 181, 193, 196, 298, 310
Bme1390I	CCNGG	4 cut(s)	29, 123, 136, 216
Bme18I	GGWCC	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	160, 212
BmiI	GGNNCC	2 cut(s)	162, 331
BmrFI	CCNGG	4 cut(s)	29, 123, 136, 216
BmsI	GCATC	2 cut(s)	178, 213
BpiI	GAAGAC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	285
BpuMI	CCSGG	2 cut(s)	29, 136
BsaJI	CCNNGG	4 cut(s)	177, 215, 257, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 169
Bse3DI	GCAATG	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	123, 216
BseDI	CCNNGG	4 cut(s)	177, 215, 257, 279
BseLI	CCNNNNNNNGG	2 cut(s)	141, 169
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	71, 178
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	2 cut(s)	117, 179
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	161, 176, 182
BsiEI	CGRYCG	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	29, 136
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	2 cut(s)	141, 169
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	161, 176, 182
BsoBI	CYCGRG	1 cut(s)	6
BspACI	CCGC	7 cut(s)	115, 173, 177, 179, 194, 296, 308
BspANI	GGCC	3 cut(s)	161, 176, 182
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	2 cut(s)	117, 179
BspLI	GGNNCC	2 cut(s)	162, 331
BspMAI	CTGCAG	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	177, 215, 257, 279
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	123, 216
Bst4CI	ACNGT	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	57, 83, 119
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	117, 179
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 305
BstNI	CCWGG	2 cut(s)	123, 216
BstSCI	CCNGG	4 cut(s)	27, 121, 134, 214
BstSFI	CTRYAG	1 cut(s)	57
BstUI	CGCG	2 cut(s)	117, 179
BstV1I	GCAGC	2 cut(s)	71, 178
BstV2I	GAAGAC	1 cut(s)	245
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	161, 176, 182
BtgI	CCRYGG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	286
Cac8I	GCNNGC	3 cut(s)	57, 83, 119
CciNI	GCGGCCGC	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	160, 212
Cfr42I	CCGCGG	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	67, 77
CviQI	GTAC	2 cut(s)	67, 77
DdeI	CTNAG	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
EclXI	CGGCCG	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	121, 214
FaiI	YATR	2 cut(s)	38, 142
FaqI	GGGAC	1 cut(s)	261
Fnu4HI	GCNGC	8 cut(s)	60, 174, 177, 180, 192, 195, 297, 309
Fsp4HI	GCNGC	8 cut(s)	60, 174, 177, 180, 192, 195, 297, 309
FspBI	CTAG	2 cut(s)	146, 263
GluI	GCNGC	8 cut(s)	60, 174, 177, 180, 192, 195, 297, 309
HaeIII	GGCC	3 cut(s)	161, 176, 182
HapII	CCGG	2 cut(s)	29, 136
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	2 cut(s)	29, 136
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	5 cut(s)	109, 209, 258, 283, 334
Hpy188III	TCNNGA	2 cut(s)	236, 302
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	59, 202, 289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 305
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	285
KspI	CCGCGG	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	42, 69, 108, 135, 149, 201, 228, 249
Lsp1109I	GCAGC	2 cut(s)	71, 178
LweI	GCATC	2 cut(s)	178, 213
MaeI	CTAG	2 cut(s)	146, 263
MaeII	ACGT	1 cut(s)	285
MboII	GAAGA	1 cut(s)	245
MluCI	AATT	2 cut(s)	312, 373
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	8 cut(s)	35, 65, 151, 203, 215, 252, 289, 298
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	29, 136
MspR9I	CCNGG	4 cut(s)	29, 123, 136, 216
MvaI	CCWGG	2 cut(s)	123, 216
MvnI	CGCG	2 cut(s)	117, 179
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 305
NciI	CCSGG	2 cut(s)	29, 136
NlaIV	GGNNCC	2 cut(s)	162, 331
NotI	GCGGCCGC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PkrI	GCNGC	8 cut(s)	61, 175, 178, 181, 193, 196, 298, 310
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	121, 214
PspGI	CCWGG	2 cut(s)	121, 214
PspN4I	GGNNCC	2 cut(s)	162, 331
PspPI	GGNCC	2 cut(s)	160, 212
PstI	CTGCAG	1 cut(s)	61
RsaI	GTAC	2 cut(s)	68, 78
RsaNI	GTAC	2 cut(s)	67, 77
SacII	CCGCGG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	8 cut(s)	60, 174, 177, 180, 192, 195, 297, 309
Sau96I	GGNCC	2 cut(s)	160, 212
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	4 cut(s)	29, 123, 136, 216
SetI	ASST	3 cut(s)	155, 207, 288
SfaNI	GCATC	2 cut(s)	178, 213
SfcI	CTRYAG	1 cut(s)	57
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	2 cut(s)	312, 373
SsiI	CCGC	7 cut(s)	115, 173, 177, 179, 194, 296, 308
SspMI	CTAG	2 cut(s)	146, 263
StyD4I	CCNGG	4 cut(s)	27, 121, 134, 214
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	272, 342
TasI	AATT	2 cut(s)	312, 373
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	6 cut(s)	176, 179, 182, 197, 299, 311
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	2 cut(s)	59, 191
TspDTI	ATGAA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	212
XspI	CTAG	2 cut(s)	146, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.