Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005624

Physical Location & Seq

Genomic Coordinates Forward (+)

55584028 .. 55584381

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20775

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTTGATAGTCTTCTGAGGCCGGCGAGTTCGAGTCCCTCGGACGTGCAGTTGGCGGCTCAAGAGGCGGCAATGAGGTTTAGGAGACTGCCAATGGGGTCGGTATCGGCGGAGGTGGCTGGTGGTTCGAGTGGTGGTGCGGCGCCGGTGACTGTGGGAGTGACCGTGGGACTGTCGCCGAGTCAAATTCAGGCCATTAATGAGTCGCCATTGGACTCGCCTAAGATGTGGTTGCAGTACATGTACATGTCTCATCGTGATGAGGCTTTGTTTTTTGGGGAGGACATGCCATCGTCTATGGGTTTCTATGATGATCACGATGATGGTTTGCATCAGTCCATTTGGGACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

117

Amino Acids

12.57

Weight (kDa)

4.37

Isoelectric Point (pI)

89.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33760
fragaria_vesca	FvH4_5g33240
malus_domestica	MD15G1396500.v1.1
prunus_persica	Prupe.1G545400_v2.0.a1
pyrus_communis	pycom15g35660
rosa_chinensis	RchiOBHm_Chr7g0231641 RchiOBHm_Chr7g0231741 RchiOBHm_Chr7g0231821 RchiOBHm_Chr7g0231881 RchiOBHm_Chr7g0231901 RchiOBHm_Chr7g0231921 RchiOBHm_Chr7g0232011 RchiOBHm_Chr7g0232021
rosa_laevigata	RLG00000001403
rosa_multiflora	Rmu_sc0003063.1_g000014 Rmu_sc0004618.1_g000040
rosa_roxburghii	Rroxscaffold_3G00228920 Rroxscaffold_3G00228940 Rroxscaffold_3G00228980
rosa_rugosa	Rorug07G0267800 Rorug07G0267900 Rorug07G0268300
rosa_samantha	Rh7AG422500 Rh7BG396800 Rh7BG396900 Rh7CG442700 Rh7DG414800
rosa_wichuraiana	Rw7G034830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AciI	CCGC	4 cut(s)	56, 68, 110, 140
AcsI	RAATTY	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	239, 245
AflIII	ACRYGT	2 cut(s)	240, 246
AjiI	CACGTC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	79, 255
AoxI	GGCC	2 cut(s)	20, 192
ApoI	RAATTY	1 cut(s)	186
AseI	ATTAAT	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	5
BccI	CCATC	2 cut(s)	298, 317
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	79, 255
BfaI	CTAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	3 cut(s)	57, 69, 141
BlsI	GCNGC	3 cut(s)	58, 70, 142
BmgBI	CACGTC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	144
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	39, 165
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bse118I	RCCGGY	2 cut(s)	22, 145
Bse3DI	GCAATG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	39, 165
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	22, 194
BshNI	GGYRCC	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	23, 146
BslFI	GGGAC	2 cut(s)	21, 183
BsmAI	GTCTC	2 cut(s)	79, 255
BsmFI	GGGAC	2 cut(s)	21, 183
BsnI	GGCC	2 cut(s)	22, 194
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	4 cut(s)	56, 68, 110, 140
BspANI	GGCC	2 cut(s)	22, 194
BspCNI	CTCAG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	2 cut(s)	22, 145
BsrGI	TGTACA	1 cut(s)	243
BssAI	RCCGGY	2 cut(s)	22, 145
BssECI	CCNNGG	2 cut(s)	39, 165
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	143
Bst4CI	ACNGT	3 cut(s)	154, 166, 174
BstACI	GRCGYC	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	17, 222
BstDSI	CCRYGG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	2 cut(s)	79, 255
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 116
BstNSI	RCATGY	3 cut(s)	244, 250, 289
BstV2I	GAAGAC	1 cut(s)	5
BsuRI	GGCC	2 cut(s)	22, 194
BtgI	CCRYGG	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	2 cut(s)	22, 145
Csp6I	GTAC	2 cut(s)	238, 244
CviAII	CATG	3 cut(s)	241, 247, 286
CviJI	RGCY	5 cut(s)	22, 59, 119, 194, 266
CviKI_1	RGCY	5 cut(s)	22, 59, 119, 194, 266
CviQI	GTAC	2 cut(s)	238, 244
DdeI	CTNAG	2 cut(s)	17, 222
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	125
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	3 cut(s)	244, 250, 289
FaiI	YATR	5 cut(s)	242, 248, 287, 299, 309
FaqI	GGGAC	2 cut(s)	21, 183
FatI	CATG	3 cut(s)	240, 246, 285
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	57, 69, 141
Fsp4HI	GCNGC	3 cut(s)	57, 69, 141
FspBI	CTAG	1 cut(s)	352
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	57, 69, 141
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	22, 194
HapII	CCGG	2 cut(s)	23, 146
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	244, 250, 289
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	5 cut(s)	34, 181, 203, 215, 347
HpaII	CCGG	2 cut(s)	23, 146
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	18, 43
Hpy188III	TCNNGA	3 cut(s)	62, 257, 317
HpyCH4III	ACNGT	3 cut(s)	154, 166, 174
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	49, 235, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 116
HpyF3I	CTNAG	2 cut(s)	17, 222
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	3 cut(s)	244, 250, 289
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	313
LpnPI	CCDG	4 cut(s)	36, 105, 159, 176
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	352
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	148, 160
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	1 cut(s)	5
MluCI	AATT	1 cut(s)	186
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	5 cut(s)	43, 190, 209, 212, 341
MnlI	CCTC	7 cut(s)	12, 49, 58, 69, 106, 256, 274
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	3 cut(s)	245, 258, 321
MspI	CCGG	2 cut(s)	23, 146
MwoI	GCNNNNNNNGC	2 cut(s)	65, 116
NaeI	GCCGGC	1 cut(s)	24
NarI	GGCGCC	1 cut(s)	143
NdeII	GATC	1 cut(s)	313
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	244, 250, 289
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	148, 160
NspI	RCATGY	3 cut(s)	244, 250, 289
PciI	ACATGT	2 cut(s)	240, 246
PdiI	GCCGGC	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	58, 70, 142
PleI	GAGTC	5 cut(s)	42, 189, 209, 211, 341
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	5 cut(s)	42, 189, 209, 211, 341
PscI	ACATGT	2 cut(s)	240, 246
PshBI	ATTAAT	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	144
RsaI	GTAC	2 cut(s)	239, 245
RsaNI	GTAC	2 cut(s)	238, 244
RseI	CAYNNNNRTG	3 cut(s)	245, 258, 321
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	57, 69, 141
Sau3AI	GATC	1 cut(s)	313
SchI	GAGTC	5 cut(s)	43, 190, 209, 212, 341
SetI	ASST	3 cut(s)	48, 80, 117
SfaNI	GCATC	1 cut(s)	340
SfoI	GGCGCC	1 cut(s)	144
SgrAI	CRCCGGYG	1 cut(s)	145
SmiMI	CAYNNNNRTG	3 cut(s)	245, 258, 321
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	4 cut(s)	56, 68, 110, 140
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	154, 166, 174
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	32, 128
TasI	AATT	1 cut(s)	186
TatI	WGTACW	2 cut(s)	237, 243
TauI	GCSGC	3 cut(s)	59, 71, 143
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	148, 160
Tsp45I	GTSAC	2 cut(s)	148, 160
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	1 cut(s)	186
XceI	RCATGY	3 cut(s)	244, 250, 289
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.