Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005624

Physical Location & Seq

Genomic Coordinates Forward (+)

44558295 .. 44559250

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G545400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAACCACCGGCTGCCGATTGCCACCACGTCCCTTCTTCAGAACGATACAGAGGCGTTCGCAAGCGAAAATGGGGCAAATGGGTGTCTGAAATCCGCGAGCCAGGGAAGAAAACTCGGATATGGCTTGGGAGCTACGAAGAGCCAGAAATGGCGGCCGCCGCCTATGATGCGGCTGCATTGCACCTGAGGGGACGTGGCGCGGTGCTGAATTTTCCTGAACTGATTGATAGCCTGCCGAGGCCGGCGAGTTCTAGCCCGATGGACGTGCAATTGGCGGCTCAAGAGGCTGCATTGAGGGTTAGGAGGCTGCGAATTGGGGCTGTTTCGACGGAGGCGGCAGGTGGCTCGTCCTCGCCCAGGGGCTTGAGCTCAATGCCTGTGACGGTGGGGCTGTCGCCGAGTCAAATCCAGGCTATTAACGAGTCGCCATTGGACTCGCCGAAGCTGTGGATGCAGTACATGTACAGGGCTCATTGCCATGAGGGTCTGTCGTTGTTAGGGGACGACATGTCGTGTGTTGAGTATTATGATGAGGAGGTTGAGTTGGGGGAGTGTGAGAATATGCAGCATTTGTCCATATGGGATTCCTACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

200

Amino Acids

22.1

Weight (kDa)

5.54

Isoelectric Point (pI)

70.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33760
fragaria_vesca	FvH4_5g33240
malus_domestica	MD15G1396500.v1.1
prunus_persica	Prupe.1G545400_v2.0.a1
pyrus_communis	pycom15g35660
rosa_chinensis	RchiOBHm_Chr7g0231641 RchiOBHm_Chr7g0231741 RchiOBHm_Chr7g0231821 RchiOBHm_Chr7g0231881 RchiOBHm_Chr7g0231901 RchiOBHm_Chr7g0231921 RchiOBHm_Chr7g0232011 RchiOBHm_Chr7g0232021
rosa_laevigata	RLG00000001403
rosa_multiflora	Rmu_sc0003063.1_g000014 Rmu_sc0004618.1_g000040
rosa_roxburghii	Rroxscaffold_3G00228920 Rroxscaffold_3G00228940 Rroxscaffold_3G00228980
rosa_rugosa	Rorug07G0267800 Rorug07G0267900 Rorug07G0268300
rosa_samantha	Rh7AG422500 Rh7BG396800 Rh7BG396900 Rh7CG442700 Rh7DG414800
rosa_wichuraiana	Rw7G034830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	332
AccII	CGCG	2 cut(s)	99, 203
AciI	CCGC	8 cut(s)	97, 155, 159, 162, 173, 203, 278, 338
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	2 cut(s)	461, 467
AfiI	CCNNNNNNNGG	1 cut(s)	360
AflIII	ACRYGT	2 cut(s)	462, 510
AhdI	GACNNNNNGTC	1 cut(s)	511
AjiI	CACGTC	3 cut(s)	31, 197, 268
AjnI	CCWGG	3 cut(s)	103, 359, 411
AluBI	AGCT	3 cut(s)	135, 372, 448
AluI	AGCT	3 cut(s)	135, 372, 448
Alw21I	GWGCWC	1 cut(s)	374
AoxI	GGCC	2 cut(s)	156, 242
ApeKI	GCWGC	5 cut(s)	14, 176, 290, 310, 568
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	188
BanII	GRGCYC	2 cut(s)	374, 475
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	4 cut(s)	163, 277, 297, 580
BccI	CCATC	1 cut(s)	256
BcgI	CGANNNNNNTGC	4 cut(s)	250, 284, 330, 364
BciT130I	CCWGG	3 cut(s)	105, 361, 413
BfaI	CTAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	332
Bme1390I	CCNGG	3 cut(s)	105, 361, 413
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgBI	CACGTC	3 cut(s)	31, 197, 268
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	105, 361, 413
BmsI	GCATC	2 cut(s)	160, 444
BpuEI	CTTGAG	2 cut(s)	267, 388
BsaJI	CCNNGG	4 cut(s)	104, 239, 359, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse118I	RCCGGY	2 cut(s)	10, 244
Bse21I	CCTNAGG	1 cut(s)	188
Bse3DI	GCAATG	2 cut(s)	179, 475
BseBI	CCWGG	3 cut(s)	105, 361, 413
BseDI	CCNNGG	4 cut(s)	104, 239, 359, 360
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	2 cut(s)	179, 475
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	551
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	163, 277, 297, 580
Bsh1236I	CGCG	2 cut(s)	99, 203
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	158, 244
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	11, 245
BslFI	GGGAC	3 cut(s)	17, 207, 518
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	17, 207, 518
BsnI	GGCC	2 cut(s)	158, 244
Bsp1286I	GDGCHC	2 cut(s)	374, 475
Bsp1407I	TGTACA	1 cut(s)	465
BspACI	CCGC	8 cut(s)	97, 155, 159, 162, 173, 203, 278, 338
BspANI	GGCC	2 cut(s)	158, 244
BspCNI	CTCAG	1 cut(s)	180
BspFNI	CGCG	2 cut(s)	99, 203
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	135
BsrDI	GCAATG	2 cut(s)	179, 475
BsrFI	RCCGGY	2 cut(s)	10, 244
BsrGI	TGTACA	1 cut(s)	465
BssAI	RCCGGY	2 cut(s)	10, 244
BssECI	CCNNGG	4 cut(s)	104, 239, 359, 360
Bst2UI	CCWGG	3 cut(s)	105, 361, 413
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	465
BstC8I	GCNNGC	4 cut(s)	65, 101, 236, 246
BstDEI	CTNAG	1 cut(s)	188
BstENI	CCTNNNNNAGG	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	459
BstFNI	CGCG	2 cut(s)	99, 203
BstHHI	GCGC	1 cut(s)	203
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 287, 454
BstNI	CCWGG	3 cut(s)	105, 361, 413
BstNSI	RCATGY	2 cut(s)	466, 514
BstSCI	CCNGG	3 cut(s)	103, 359, 411
BstUI	CGCG	2 cut(s)	99, 203
BstV1I	GCAGC	4 cut(s)	163, 277, 297, 580
BstZI	CGGCCG	1 cut(s)	156
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	158, 244
BtrI	CACGTC	3 cut(s)	31, 197, 268
BtsCI	GGATG	1 cut(s)	459
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	4 cut(s)	65, 101, 236, 246
CciNI	GCGGCCGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	2 cut(s)	10, 244
Csp6I	GTAC	2 cut(s)	460, 466
CviAII	CATG	3 cut(s)	463, 482, 511
CviQI	GTAC	2 cut(s)	460, 466
DdeI	CTNAG	1 cut(s)	188
DriI	GACNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	372
EclXI	CGGCCG	1 cut(s)	156
Eco24I	GRGCYC	2 cut(s)	374, 475
Eco52I	CGGCCG	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	24
Eco81I	CCTNAGG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	358
EcoRII	CCWGG	3 cut(s)	103, 359, 411
EcoT38I	GRGCYC	2 cut(s)	374, 475
FaeI	CATG	3 cut(s)	466, 485, 514
FaqI	GGGAC	3 cut(s)	17, 207, 518
FatI	CATG	3 cut(s)	462, 481, 510
FauNDI	CATATG	1 cut(s)	581
FokI	GGATG	1 cut(s)	466
FriOI	GRGCYC	2 cut(s)	374, 475
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	158, 244
HapII	CCGG	2 cut(s)	11, 245
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	466, 485, 514
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	4 cut(s)	403, 425, 437, 587
HpaII	CCGG	2 cut(s)	11, 245
Hpy188I	TCNGA	3 cut(s)	43, 91, 120
Hpy188III	TCNNGA	2 cut(s)	218, 284
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	3 cut(s)	30, 196, 267
HpyCH4V	TGCA	6 cut(s)	179, 184, 271, 293, 457, 568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 287, 454
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	3 cut(s)	30, 196, 267
Hsp92II	CATG	3 cut(s)	466, 485, 514
HspAI	GCGC	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	4 cut(s)	163, 277, 297, 580
LweI	GCATC	2 cut(s)	160, 444
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	3 cut(s)	30, 196, 267
MaeIII	GTNAC	1 cut(s)	382
MboII	GAAGA	3 cut(s)	30, 121, 152
MfeI	CAATTG	1 cut(s)	272
MhlI	GDGCHC	2 cut(s)	374, 475
MluCI	AATT	3 cut(s)	211, 272, 315
MlyI	GAGTC	3 cut(s)	412, 431, 434
MroNI	GCCGGC	1 cut(s)	244
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	480
MspI	CCGG	2 cut(s)	11, 245
MspR9I	CCNGG	3 cut(s)	105, 361, 413
MunI	CAATTG	1 cut(s)	272
MvaI	CCWGG	3 cut(s)	105, 361, 413
MvnI	CGCG	2 cut(s)	99, 203
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 287, 454
NaeI	GCCGGC	1 cut(s)	246
NdeI	CATATG	1 cut(s)	581
NgoMIV	GCCGGC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	466, 485, 514
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	2 cut(s)	264, 426
NmuCI	GTSAC	1 cut(s)	382
NotI	GCGGCCGC	1 cut(s)	156
NspI	RCATGY	2 cut(s)	466, 514
PaqCI	CACCTGC	1 cut(s)	332
PasI	CCCWGGG	1 cut(s)	360
PciI	ACATGT	2 cut(s)	462, 510
PciSI	GCTCTTC	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	587
PleI	GAGTC	3 cut(s)	411, 431, 433
PpsI	GAGTC	3 cut(s)	411, 431, 433
PscI	ACATGT	2 cut(s)	462, 510
Psp124BI	GAGCTC	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	103, 359, 411
PspGI	CCWGG	3 cut(s)	103, 359, 411
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	2 cut(s)	461, 467
RsaNI	GTAC	2 cut(s)	460, 466
RseI	CAYNNNNRTG	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	420
SchI	GAGTC	3 cut(s)	412, 431, 434
ScrFI	CCNGG	3 cut(s)	105, 361, 413
SduI	GDGCHC	2 cut(s)	374, 475
SetI	ASST	9 cut(s)	33, 137, 189, 199, 270, 346, 374, 450, 543
SfaNI	GCATC	2 cut(s)	160, 444
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	282, 367
SmoI	CTYRAG	2 cut(s)	282, 367
Sse9I	AATT	3 cut(s)	211, 272, 315
SsiI	CCGC	8 cut(s)	97, 155, 159, 162, 173, 203, 278, 338
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	3 cut(s)	103, 359, 411
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	3 cut(s)	33, 199, 270
TaqI	TCGA	1 cut(s)	329
TasI	AATT	3 cut(s)	211, 272, 315
TatI	WGTACW	2 cut(s)	459, 465
TauI	GCSGC	6 cut(s)	158, 161, 164, 176, 281, 341
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	5 cut(s)	14, 176, 290, 310, 568
Tsp45I	GTSAC	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	347
XagI	CCTNNNNNAGG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	2 cut(s)	466, 514
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.