AT1G36100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004040
Physical Location & Seq
Forward (+)
13494652 .. 13495215
564 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G36100.1

Sequence Viewer

Length: 564 bp
ATGAATTCTGAAAATGAAAGGCCTGAATCCCCATCTTTCGAAGATCTCGGTTCTAGTAATGACCTTTGCACCCGGCCAAATGATATCGCCGGTCCCCACTACCAAACCACGTGCACTCTTCAATCCCTTAATCGATTGGGAGAGCTTTGTCGGATTCTGGCTGAGATTATGAAAGACTCGCAGATGCCGGAGCCCACTGAATCACCGGAGGACCACCGTCCCGGGTTCTTTTGTGTAAACGAGATCTACTTCAAGGGTTGCGGTTTGACTTTTCCCCTTCCCGGAGCCCTCGTTCGATACTTATTAGCCCTCGAAATTGCCTTGCCCCAATTAACCCCTAACCTCCTCCGGACTATTCTAGGGATTATTACTATCGCGGCGGAAGCCGGATATGTCATCGGAGTTCCCGAACTGAATGAACTTCTTAGCGTGAGGAGTTCTTCGAAGAAAGTGGGATACTTCTCGGTTATCCGAACGCCAACAAGAACCTCATCTCGCATCTTCCTAATAAAGACGAGAACTGGCATCACCCGTGGTTCTTTATTAGTCATGTTTACTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.69

Weight (kDa)

6.15

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 377
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 3 cut(s) 261, 377, 380
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 1 cut(s) 4
AcvI CACGTG 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 122, 253
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Alw21I GWGCWC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 348
AoxI GGCC 2 cut(s) 20, 74
ApaLI GTGCAC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 2 cut(s) 92, 211
AsuC2I CCSGG 4 cut(s) 73, 222, 223, 282
AsuHPI GGTGA 2 cut(s) 195, 520
AsuII TTCGAA 2 cut(s) 39, 443
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 92, 211
BaeGI GKGCMC 1 cut(s) 116
BanII GRGCYC 2 cut(s) 195, 289
BbrPI CACGTG 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 40
BciVI GTATCC 1 cut(s) 449
BcnI CCSGG 4 cut(s) 73, 222, 223, 282
BfaI CTAG 2 cut(s) 54, 359
BfuI GTATCC 1 cut(s) 449
BglII AGATCT 2 cut(s) 43, 243
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 4 cut(s) 73, 222, 223, 282
Bme18I GGWCC 2 cut(s) 92, 211
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 92, 211
BmiI GGNNCC 3 cut(s) 94, 192, 286
BmrFI CCNGG 4 cut(s) 73, 222, 223, 282
BmsI GCATC 3 cut(s) 174, 507, 534
BoxI GACNNNNGTC 1 cut(s) 216
Bpu14I TTCGAA 2 cut(s) 39, 443
BpuMI CCSGG 4 cut(s) 73, 222, 223, 282
Bsa29I ATCGAT 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 221, 532
BsaWI WCCGGW 2 cut(s) 205, 348
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 526
BseAI TCCGGA 1 cut(s) 348
BseCI ATCGAT 1 cut(s) 133
BseDI CCNNGG 2 cut(s) 221, 532
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 2 cut(s) 335, 448
BseSI GKGCMC 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 377
BshFI GGCC 2 cut(s) 22, 76
BshVI ATCGAT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 8 cut(s) 73, 90, 188, 206, 222, 282, 349, 387
BslFI GGGAC 2 cut(s) 78, 204
BslI CCNNNNNNNGG 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 78, 204
BsnI GGCC 2 cut(s) 22, 76
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 2 cut(s) 39, 443
Bsp1286I GDGCHC 3 cut(s) 116, 195, 289
Bsp13I TCCGGA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 43, 243
BspACI CCGC 3 cut(s) 261, 377, 380
BspANI GGCC 2 cut(s) 22, 76
BspCNI CTCAG 1 cut(s) 154
BspDI ATCGAT 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 348
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 3 cut(s) 94, 192, 286
BspT104I TTCGAA 2 cut(s) 39, 443
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 1 cut(s) 526
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 221, 532
BssMI GATC 2 cut(s) 43, 243
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 111
BstBI TTCGAA 2 cut(s) 39, 443
BstDEI CTNAG 2 cut(s) 162, 425
BstDSI CCRYGG 1 cut(s) 532
BstFNI CGCG 1 cut(s) 377
BstKTI GATC 2 cut(s) 46, 246
BstMBI GATC 2 cut(s) 43, 243
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 4 cut(s) 71, 220, 221, 280
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 43, 243
BstYI RGATCY 2 cut(s) 43, 243
Bsu15I ATCGAT 1 cut(s) 133
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 2 cut(s) 22, 76
BsuTUI ATCGAT 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 92, 211
Cfr9I CCCGGG 1 cut(s) 221
ClaI ATCGAT 1 cut(s) 133
CviAII CATG 1 cut(s) 550
CviJI RGCY 8 cut(s) 22, 76, 145, 161, 193, 287, 308, 386
CviKI_1 RGCY 8 cut(s) 22, 76, 145, 161, 193, 287, 308, 386
DdeI CTNAG 2 cut(s) 162, 425
DpnI GATC 2 cut(s) 45, 245
DpnII GATC 2 cut(s) 43, 243
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 395
Eco147I AGGCCT 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 195, 289
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 92, 211
Eco72I CACGTG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 85
EcoT38I GRGCYC 2 cut(s) 195, 289
FaeI CATG 1 cut(s) 553
FaiI YATR 3 cut(s) 170, 393, 551
FaqI GGGAC 2 cut(s) 78, 204
FatI CATG 1 cut(s) 549
Fnu4HI GCNGC 1 cut(s) 378
FriOI GRGCYC 2 cut(s) 195, 289
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 2 cut(s) 54, 359
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 2 cut(s) 22, 76
HapII CCGG 8 cut(s) 73, 90, 188, 206, 222, 282, 349, 387
Hin1II CATG 1 cut(s) 553
HinfI GANTC 4 cut(s) 26, 154, 176, 200
HpaII CCGG 8 cut(s) 73, 90, 188, 206, 222, 282, 349, 387
HphI GGTGA 2 cut(s) 195, 520
Hpy166II GTNNAC 3 cut(s) 114, 238, 555
Hpy188I TCNGA 4 cut(s) 10, 153, 401, 473
Hpy188III TCNNGA 2 cut(s) 349, 407
Hpy8I GTNNAC 3 cut(s) 114, 238, 555
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 69, 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 162, 425
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 1 cut(s) 553
Kpn2I TCCGGA 1 cut(s) 348
Kzo9I GATC 2 cut(s) 43, 243
LmnI GCTCC 2 cut(s) 190, 284
LweI GCATC 3 cut(s) 174, 507, 534
MaeI CTAG 2 cut(s) 54, 359
MaeII ACGT 1 cut(s) 110
MalI GATC 2 cut(s) 45, 245
MboI GATC 2 cut(s) 43, 243
MboII GAAGA 5 cut(s) 53, 110, 432, 457, 493
MflI RGATCY 2 cut(s) 43, 243
MhlI GDGCHC 3 cut(s) 116, 195, 289
MluCI AATT 3 cut(s) 4, 315, 329
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 7 cut(s) 202, 299, 320, 353, 356, 426, 499
MroI TCCGGA 1 cut(s) 348
MseI TTAA 2 cut(s) 129, 332
MspI CCGG 8 cut(s) 73, 90, 188, 206, 222, 282, 349, 387
MspR9I CCNGG 4 cut(s) 73, 222, 223, 282
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 4 cut(s) 73, 222, 223, 282
NdeII GATC 2 cut(s) 43, 243
NlaIII CATG 1 cut(s) 553
NlaIV GGNNCC 3 cut(s) 94, 192, 286
NspV TTCGAA 2 cut(s) 39, 443
PceI AGGCCT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PfeI GAWTC 3 cut(s) 26, 154, 200
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 170
PmaCI CACGTG 1 cut(s) 111
PmlI CACGTG 1 cut(s) 111
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 111
PshAI GACNNNNGTC 1 cut(s) 216
PspCI CACGTG 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 94, 192, 286
PspPI GGNCC 2 cut(s) 92, 211
PsuI RGATCY 2 cut(s) 43, 243
SaqAI TTAA 2 cut(s) 129, 332
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 2 cut(s) 43, 243
Sau96I GGNCC 2 cut(s) 92, 211
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 4 cut(s) 73, 222, 223, 282
SduI GDGCHC 3 cut(s) 116, 195, 289
SetI ASST 5 cut(s) 66, 113, 147, 345, 491
SfaNI GCATC 3 cut(s) 174, 507, 534
SfuI TTCGAA 2 cut(s) 39, 443
SinI GGWCC 2 cut(s) 92, 211
SmaI CCCGGG 1 cut(s) 223
Sse9I AATT 3 cut(s) 4, 315, 329
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 3 cut(s) 261, 377, 380
SspMI CTAG 2 cut(s) 54, 359
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 4 cut(s) 71, 220, 221, 280
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 113
TaqI TCGA 5 cut(s) 39, 133, 295, 312, 443
TasI AATT 3 cut(s) 4, 315, 329
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 3 cut(s) 26, 154, 200
Tru1I TTAA 2 cut(s) 129, 332
Tru9I TTAA 2 cut(s) 129, 332
TscAI CASTG 1 cut(s) 202
TspDTI ATGAA 4 cut(s) 17, 30, 185, 432
TspMI CCCGGG 1 cut(s) 221
TspRI CASTG 1 cut(s) 202
VneI GTGCAC 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 92, 211
XapI RAATTY 1 cut(s) 4
XmaI CCCGGG 1 cut(s) 221
XspI CTAG 2 cut(s) 54, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.