AT5G33806

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004040
Physical Location & Seq
Forward (+)
12784839 .. 12787298
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G33806.1

Sequence Viewer

Length: 1011 bp
ATGGAGATTATAAACGTCACGGTGGAAGCCGAATATATAGTCGGAGTTCCCGAGTTGAACGAGCTTCTTAGCGTAAGAACTTTCATTGCCCTGGCTCTTCCGACTGAAGAATTTATCGAGTTATTCAAAGTGGTTCTCGAAGGCAAAACCCTTTGGAACTCGTTTACCCTCGACCGGTTCATAGAAGTCAACCGTAATCTTAGAATGAGTCCTCCTAGGCAACTTCATCATGTTCCGCCGCCTCCTCCCATACCTCAAGGAACATCAGCCCGGGCTATTGCTTCCCGGTGCAAGACGCTATCCAAACTGATGGTCGAGGCTTGCGAGGCAAACAAATCCTTCCTTATGTCTACTATTGACAAAAAGGAATACAGCTGGACTCTTTTAGTTGATAATGGTAGTACCGAAGGGGCTAGGTTCACCGGCACTTTCAGATTTACACCTCGTCGTGAGGGCCGTAGTGGTCGCTCTCCTCGAAGAGATCGATCTCCTTGCTGTGATTCTCCTCGACCTTCTTCCCGAGATGGGACAAATCAAAGGCTCGAACTGATCGCTCCCCTCGATCGTCTCCTCCACCCTGATCGATGGGTCCTCCTCCTATCGTCACATCTCCTTCTTCTCGACCTAGTGGCAATAATACTATTCAAAGTGCGACTCCCTGACAGGAATATGCTGAGTCTCGGGATACTTCTCCAAGGACATCGATGCTTGGAAGGGAAATTTTCTTCCCTCGAAGCCGACCTTCGCTCCCTCTCTGATTCTAAGCAAAAGTTGGAAGACCGAGTTGACCATCTCTCTTCCGAGCTCATGAAATCAAACGGCTCTAGCAAACCGGTTGATTGCCGAAGCTCTTTCGGTCGTAAACTACGAGACATCGTCCCAGATGATGAAAATGATGTTGGGCTTGAACCGAAAACCACTTCCGAGCAACCCCCTGCCGCTGAACCGAATGAAACTGAGCCAGCTTTTGCTGAACCCGAGGCTGATCAGGCCTTTCTCTTAGAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

37.8

Weight (kDa)

5.82

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AccI GTMKAC 1 cut(s) 350
AciI CCGC 3 cut(s) 236, 239, 939
AcsI RAATTY 2 cut(s) 110, 719
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 174, 525
AgeI ACCGGT 2 cut(s) 174, 832
AgsI TTSAA 4 cut(s) 58, 127, 646, 908
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AluBI AGCT 5 cut(s) 64, 375, 805, 849, 965
AluI AGCT 5 cut(s) 64, 375, 805, 849, 965
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 3 cut(s) 572, 683, 864
Ama87I CYCGRG 5 cut(s) 50, 270, 519, 680, 977
AoxI GGCC 2 cut(s) 454, 990
ApoI RAATTY 2 cut(s) 110, 719
ArsI GACNNNNNNTTYG 4 cut(s) 24, 56, 297, 329
AsiGI ACCGGT 2 cut(s) 174, 832
AspA2I CCTAGG 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 454, 589
AsuC2I CCSGG 3 cut(s) 271, 272, 286
AsuHPI GGTGA 1 cut(s) 412
AvaI CYCGRG 5 cut(s) 50, 270, 519, 680, 977
AvaII GGWCC 1 cut(s) 589
AvrII CCTAGG 1 cut(s) 215
BanII GRGCYC 1 cut(s) 807
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 1 cut(s) 807
BccI CCATC 4 cut(s) 304, 518, 579, 798
BceAI ACGGC 2 cut(s) 441, 835
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 1 cut(s) 92
BciVI GTATCC 1 cut(s) 678
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 3 cut(s) 271, 272, 286
BcoDI GTCTC 3 cut(s) 572, 683, 864
BfaI CTAG 5 cut(s) 216, 414, 626, 825, 1009
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 2 cut(s) 239, 939
BlnI CCTAGG 1 cut(s) 215
BlsI GCNGC 2 cut(s) 240, 940
Bme1390I CCNGG 4 cut(s) 92, 271, 272, 286
Bme18I GGWCC 1 cut(s) 589
BmeT110I CYCGRG 5 cut(s) 50, 270, 519, 680, 977
BmgT120I GGNCC 2 cut(s) 454, 589
BmiI GGNNCC 1 cut(s) 590
BmrFI CCNGG 4 cut(s) 92, 271, 272, 286
BmsI GCATC 1 cut(s) 695
BpiI GAAGAC 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 240
BpuMI CCSGG 3 cut(s) 271, 272, 286
Bsa29I ATCGAT 3 cut(s) 484, 583, 703
BsaJI CCNNGG 5 cut(s) 90, 215, 270, 694, 978
BsaWI WCCGGW 2 cut(s) 174, 832
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 525
Bse118I RCCGGY 3 cut(s) 174, 422, 832
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 92
BseCI ATCGAT 3 cut(s) 484, 583, 703
BseDI CCNNGG 5 cut(s) 90, 215, 270, 694, 978
BseLI CCNNNNNNNGG 2 cut(s) 174, 525
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 665, 948
BseRI GAGGAG 5 cut(s) 234, 462, 495, 560, 584
Bsh1285I CGRYCG 3 cut(s) 175, 565, 859
BshFI GGCC 2 cut(s) 456, 992
BshTI ACCGGT 2 cut(s) 174, 832
BshVI ATCGAT 3 cut(s) 484, 583, 703
BsiEI CGRYCG 3 cut(s) 175, 565, 859
BsiHKAI GWGCWC 1 cut(s) 807
BsiHKCI CYCGRG 5 cut(s) 50, 270, 519, 680, 977
BsiSI CCGG 5 cut(s) 175, 271, 286, 423, 833
BslFI GGGAC 2 cut(s) 541, 863
BslI CCNNNNNNNGG 2 cut(s) 174, 525
BsmAI GTCTC 3 cut(s) 572, 683, 864
BsmBI CGTCTC 1 cut(s) 572
BsmFI GGGAC 2 cut(s) 541, 863
BsmI GAATGC 1 cut(s) 1010
BsnI GGCC 2 cut(s) 456, 992
BsoBI CYCGRG 5 cut(s) 50, 270, 519, 680, 977
Bsp1286I GDGCHC 1 cut(s) 807
Bsp143I GATC 6 cut(s) 481, 485, 549, 562, 580, 985
BspACI CCGC 3 cut(s) 236, 239, 939
BspANI GGCC 2 cut(s) 456, 992
BspCNI CTCAG 2 cut(s) 666, 949
BspDI ATCGAT 3 cut(s) 484, 583, 703
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 1 cut(s) 590
BspQI GCTCTTC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 3 cut(s) 174, 422, 832
BssAI RCCGGY 3 cut(s) 174, 422, 832
BssECI CCNNGG 5 cut(s) 90, 215, 270, 694, 978
BssMI GATC 6 cut(s) 481, 485, 549, 562, 580, 985
BssT1I CCWWGG 2 cut(s) 215, 694
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 22, 194
Bst6I CTCTTC 3 cut(s) 102, 472, 802
BstC8I GCNNGC 2 cut(s) 322, 963
BstDEI CTNAG 6 cut(s) 68, 200, 674, 762, 957, 1000
BstKTI GATC 6 cut(s) 484, 488, 552, 565, 583, 988
BstMAI GTCTC 3 cut(s) 572, 683, 864
BstMBI GATC 6 cut(s) 481, 485, 549, 562, 580, 985
BstMCI CGRYCG 3 cut(s) 175, 565, 859
BstMWI GCNNNNNNNGC 2 cut(s) 326, 989
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 4 cut(s) 90, 269, 270, 284
BstV2I GAAGAC 1 cut(s) 783
BstXI CCANNNNNNTGG 1 cut(s) 310
Bsu15I ATCGAT 3 cut(s) 484, 583, 703
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 2 cut(s) 456, 992
BsuTUI ATCGAT 3 cut(s) 484, 583, 703
Cac8I GCNNGC 2 cut(s) 322, 963
CciI TCATGA 1 cut(s) 807
Cfr10I RCCGGY 3 cut(s) 174, 422, 832
Cfr13I GGNCC 2 cut(s) 454, 589
Cfr9I CCCGGG 1 cut(s) 270
ClaI ATCGAT 3 cut(s) 484, 583, 703
CseI GACGC 1 cut(s) 304
Csp6I GTAC 1 cut(s) 402
CspAI ACCGGT 2 cut(s) 174, 832
CviAII CATG 2 cut(s) 230, 808
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 6 cut(s) 68, 200, 674, 762, 957, 1000
DpnI GATC 6 cut(s) 483, 487, 551, 564, 582, 987
DpnII GATC 6 cut(s) 481, 485, 549, 562, 580, 985
Eam1104I CTCTTC 3 cut(s) 102, 472, 802
EarI CTCTTC 3 cut(s) 102, 472, 802
EciI GGCGGA 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 805
Eco130I CCWWGG 2 cut(s) 215, 694
Eco147I AGGCCT 1 cut(s) 992
Eco24I GRGCYC 1 cut(s) 807
Eco47I GGWCC 1 cut(s) 589
Eco53kI GAGCTC 1 cut(s) 805
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 5 cut(s) 50, 270, 519, 680, 977
EcoICRI GAGCTC 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 215, 694
EcoT38I GRGCYC 1 cut(s) 807
ErhI CCWWGG 2 cut(s) 215, 694
Esp3I CGTCTC 1 cut(s) 572
FaeI CATG 2 cut(s) 233, 811
FaiI YATR 9 cut(s) 11, 36, 38, 182, 231, 251, 347, 671, 809
FalI AAGNNNNNCTT 2 cut(s) 726, 758
FaqI GGGAC 2 cut(s) 541, 863
FatI CATG 2 cut(s) 229, 807
FbaI TGATCA 1 cut(s) 985
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 2 cut(s) 239, 939
FriOI GRGCYC 1 cut(s) 807
Fsp4HI GCNGC 2 cut(s) 239, 939
FspBI CTAG 5 cut(s) 216, 414, 626, 825, 1009
GluI GCNGC 2 cut(s) 239, 939
HaeIII GGCC 2 cut(s) 456, 992
HapII CCGG 5 cut(s) 175, 271, 286, 423, 833
HgaI GACGC 1 cut(s) 304
Hin1II CATG 2 cut(s) 233, 811
HincII GTYRAC 2 cut(s) 190, 787
HindII GTYRAC 2 cut(s) 190, 787
HinfI GANTC 6 cut(s) 208, 379, 500, 654, 676, 758
HpaII CCGG 5 cut(s) 175, 271, 286, 423, 833
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 6 cut(s) 165, 190, 351, 420, 787, 863
Hpy188I TCNGA 6 cut(s) 44, 102, 434, 757, 802, 925
Hpy188III TCNNGA 7 cut(s) 50, 137, 449, 519, 620, 682, 808
Hpy8I GTNNAC 6 cut(s) 165, 190, 351, 420, 787, 863
Hpy99I CGWCG 1 cut(s) 450
HpyAV CCTTC 7 cut(s) 134, 349, 401, 522, 623, 707, 752
HpyCH4III ACNGT 2 cut(s) 22, 194
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 989
HpyF3I CTNAG 6 cut(s) 68, 200, 674, 762, 957, 1000
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 233, 811
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 6 cut(s) 481, 485, 549, 562, 580, 985
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 559, 752
LweI GCATC 1 cut(s) 695
MaeI CTAG 5 cut(s) 216, 414, 626, 825, 1009
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 16, 603
MalI GATC 6 cut(s) 483, 487, 551, 564, 582, 987
MboI GATC 6 cut(s) 481, 485, 549, 562, 580, 985
MboII GAAGA 8 cut(s) 89, 119, 489, 507, 608, 717, 788, 789
MhlI GDGCHC 1 cut(s) 807
MluCI AATT 2 cut(s) 110, 719
MlyI GAGTC 4 cut(s) 217, 373, 648, 685
MmeI TCCRAC 3 cut(s) 22, 125, 753
MspA1I CMGCKG 2 cut(s) 375, 941
MspI CCGG 5 cut(s) 175, 271, 286, 423, 833
MspR9I CCNGG 4 cut(s) 92, 271, 272, 286
Mva1269I GAATGC 1 cut(s) 1010
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 326, 989
NciI CCSGG 3 cut(s) 271, 272, 286
NdeII GATC 6 cut(s) 481, 485, 549, 562, 580, 985
NlaIII CATG 2 cut(s) 233, 811
NlaIV GGNNCC 1 cut(s) 590
NmuCI GTSAC 2 cut(s) 16, 603
PagI TCATGA 1 cut(s) 807
PceI AGGCCT 1 cut(s) 992
PciSI GCTCTTC 1 cut(s) 102
PcsI WCGNNNNNNNCGW 7 cut(s) 48, 321, 454, 472, 481, 558, 865
PctI GAATGC 1 cut(s) 1010
PfeI GAWTC 2 cut(s) 500, 758
PflFI GACNNNGTC 1 cut(s) 875
PinAI ACCGGT 2 cut(s) 174, 832
PkrI GCNGC 2 cut(s) 240, 940
Ple19I CGATCG 1 cut(s) 565
PleI GAGTC 4 cut(s) 216, 373, 648, 684
PpsI GAGTC 4 cut(s) 216, 373, 648, 684
PpuMI RGGWCCY 1 cut(s) 589
PsiI TTATAA 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 2 cut(s) 454, 589
PspPPI RGGWCCY 1 cut(s) 589
PsyI GACNNNGTC 1 cut(s) 875
PvuI CGATCG 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SacI GAGCTC 1 cut(s) 807
SapI GCTCTTC 1 cut(s) 102
SatI GCNGC 2 cut(s) 239, 939
Sau3AI GATC 6 cut(s) 481, 485, 549, 562, 580, 985
Sau96I GGNCC 2 cut(s) 454, 589
SchI GAGTC 4 cut(s) 217, 373, 648, 685
ScrFI CCNGG 4 cut(s) 92, 271, 272, 286
SduI GDGCHC 1 cut(s) 807
SfaNI GCATC 1 cut(s) 695
SinI GGWCC 1 cut(s) 589
SmaI CCCGGG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
SrfI GCCCGGGC 1 cut(s) 272
Sse9I AATT 2 cut(s) 110, 719
SseBI AGGCCT 1 cut(s) 992
SsiI CCGC 3 cut(s) 236, 239, 939
SspMI CTAG 5 cut(s) 216, 414, 626, 825, 1009
SstI GAGCTC 1 cut(s) 807
StuI AGGCCT 1 cut(s) 992
StyD4I CCNGG 4 cut(s) 90, 269, 270, 284
StyI CCWWGG 2 cut(s) 215, 694
TaaI ACNGT 2 cut(s) 22, 194
TaiI ACGT 1 cut(s) 18
TaqII GACCGA 2 cut(s) 795, 845
TasI AATT 2 cut(s) 110, 719
TauI GCSGC 2 cut(s) 241, 941
TfiI GAWTC 2 cut(s) 500, 758
TseFI GTSAC 2 cut(s) 16, 603
Tsp45I GTSAC 2 cut(s) 16, 603
TspDTI ATGAA 6 cut(s) 73, 169, 215, 824, 903, 966
TspMI CCCGGG 1 cut(s) 270
Tth111I GACNNNGTC 1 cut(s) 875
VpaK11BI GGWCC 1 cut(s) 589
XapI RAATTY 2 cut(s) 110, 719
XmaI CCCGGG 1 cut(s) 270
XmaJI CCTAGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 5 cut(s) 216, 414, 626, 825, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.