AT4G06490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004040
Physical Location & Seq
Forward (+)
3116894 .. 3117334
441 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G06490.1

Sequence Viewer

Length: 441 bp
ATGCAGGTTAACCTTCGATGTTCGGAATCCATGCTAGATTTTTCCAGAGTCGGGATGATGGAAGAAGACATCCCAAACGTGCCGGGAAGAGGGACTTCTCCACCTCATGGCTATTTGAGGTCCCAAATCCTAGCTCTATGTGTGATGATCAAGGGACTTTTGGATAGAGATCAAGAAATCGCGATGGCATTCATCAAAGCTCTTGCTGTTCAGCACCAGAAGCGTACGATGGAGAGAAGAAATATTCGCAAAAAGATTAACCGAATGTTACTCAGAGTCACCGCGATAACAAGGGAACTTCACAACCTGAATTCCCACCCTGGAGATTGGATCGAACTTGGAATCTCCAAGTTCGCTCGCATACCGGACTGTATGATGTCGAACCTCGACCTCGCTGGTCAAGGAGTCCAAGTGTTTTGCAAATCGAGAAGAGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.65

Weight (kDa)

9.86

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3287 PF11690 24 - 136 9.8e-38 Protein of unknown function (DUF3287)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AccII CGCG 2 cut(s) 182, 284
AciI CCGC 1 cut(s) 282
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 3 cut(s) 51, 89, 107
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 2 cut(s) 134, 200
AluI AGCT 2 cut(s) 134, 200
AlwI GGATC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 310
Asp700I GAANNNNTTC 1 cut(s) 433
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 72
BccI CCATC 3 cut(s) 52, 178, 223
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 1 cut(s) 84
BfaI CTAG 2 cut(s) 35, 131
Bme1390I CCNGG 2 cut(s) 84, 321
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 2 cut(s) 84, 321
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 89, 107
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 2 cut(s) 60, 69
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 51, 89, 107
BseMII CTCAG 1 cut(s) 286
Bsh1236I CGCG 2 cut(s) 182, 284
BsiSI CCGG 2 cut(s) 83, 365
BsiWI CGTACG 1 cut(s) 224
BslFI GGGAC 3 cut(s) 106, 106, 168
BslI CCNNNNNNNGG 3 cut(s) 51, 89, 107
BsmFI GGGAC 3 cut(s) 106, 106, 168
BsmI GAATGC 1 cut(s) 188
Bsp143I GATC 3 cut(s) 147, 169, 330
Bsp68I TCGCGA 1 cut(s) 182
BspACI CCGC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 2 cut(s) 182, 284
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 3 cut(s) 147, 169, 330
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 2 cut(s) 82, 424
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 60, 69
BstFNI CGCG 2 cut(s) 182, 284
BstKTI GATC 3 cut(s) 150, 172, 333
BstMBI GATC 3 cut(s) 147, 169, 330
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 2 cut(s) 82, 319
BstUI CGCG 2 cut(s) 182, 284
BstV2I GAAGAC 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 197
BtsCI GGATG 2 cut(s) 60, 69
BtuMI TCGCGA 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 225
CviAII CATG 2 cut(s) 31, 107
CviJI RGCY 3 cut(s) 111, 134, 200
CviKI_1 RGCY 3 cut(s) 111, 134, 200
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 272
DpnI GATC 3 cut(s) 149, 171, 332
DpnII GATC 3 cut(s) 147, 169, 330
Eam1104I CTCTTC 2 cut(s) 82, 424
EarI CTCTTC 2 cut(s) 82, 424
Eco47I GGWCC 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 34, 110
FaiI YATR 5 cut(s) 32, 108, 139, 362, 374
FalI AAGNNNNNCTT 3 cut(s) 79, 111, 421
FaqI GGGAC 3 cut(s) 106, 106, 168
FatI CATG 2 cut(s) 30, 106
FbaI TGATCA 1 cut(s) 147
FokI GGATG 2 cut(s) 56, 67
FspBI CTAG 2 cut(s) 35, 131
GsuI CTGGAG 1 cut(s) 342
HapII CCGG 2 cut(s) 83, 365
Hin1II CATG 2 cut(s) 34, 110
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 5 cut(s) 26, 48, 276, 342, 405
HpaI GTTAAC 1 cut(s) 10
HpaII CCGG 2 cut(s) 83, 365
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 25, 275
Hpy188III TCNNGA 5 cut(s) 45, 52, 173, 181, 426
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 4, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 34, 110
Ksp22I TGATCA 1 cut(s) 147
KspAI GTTAAC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 147, 169, 330
LpnPI CCDG 8 cut(s) 58, 96, 230, 306, 320, 333, 378, 381
MaeI CTAG 2 cut(s) 35, 131
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 267, 277
MalI GATC 3 cut(s) 149, 171, 332
MboI GATC 3 cut(s) 147, 169, 330
MboII GAAGA 5 cut(s) 74, 77, 99, 249, 441
MluCI AATT 1 cut(s) 310
MlyI GAGTC 3 cut(s) 57, 285, 414
MnlI CCTC 5 cut(s) 83, 111, 114, 395, 401
MroXI GAANNNNTTC 1 cut(s) 433
MseI TTAA 3 cut(s) 9, 258, 439
MspI CCGG 2 cut(s) 83, 365
MspR9I CCNGG 2 cut(s) 84, 321
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 2 cut(s) 182, 284
MwoI GCNNNNNNNGC 1 cut(s) 220
NciI CCSGG 1 cut(s) 84
NdeII GATC 3 cut(s) 147, 169, 330
NlaIII CATG 2 cut(s) 34, 110
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 277
NruI TCGCGA 1 cut(s) 182
PctI GAATGC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 433
PfeI GAWTC 2 cut(s) 26, 342
Pfl23II CGTACG 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 107
PleI GAGTC 3 cut(s) 56, 284, 413
PpsI GAGTC 3 cut(s) 56, 284, 413
PpuMI RGGWCCY 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspLI CGTACG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 120
PspPPI RGGWCCY 1 cut(s) 120
RruI TCGCGA 1 cut(s) 182
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 9, 258, 439
Sau3AI GATC 3 cut(s) 147, 169, 330
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 3 cut(s) 57, 285, 414
ScrFI CCNGG 2 cut(s) 84, 321
SinI GGWCC 1 cut(s) 120
Sse9I AATT 1 cut(s) 310
SsiI CCGC 1 cut(s) 282
SspI AATATT 1 cut(s) 244
SspMI CTAG 2 cut(s) 35, 131
StyD4I CCNGG 2 cut(s) 82, 319
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 1 cut(s) 81
TaqI TCGA 5 cut(s) 16, 333, 380, 387, 425
TasI AATT 1 cut(s) 310
TfiI GAWTC 2 cut(s) 26, 342
Tru1I TTAA 3 cut(s) 9, 258, 439
Tru9I TTAA 3 cut(s) 9, 258, 439
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 433
XspI CTAG 2 cut(s) 35, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.