AT4G07932

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004040
Physical Location & Seq
Forward (+)
4732198 .. 4733424
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G07932.1

Sequence Viewer

Length: 588 bp
ATGACAAATGGCAAGCATTTTGCATGGTGTCCGACCAAGGGACTTGGGATCCTAGTCTATTCTCTTCAGCTCCACGCGAGCCGACTTGCATTCTTGGATCACACTCGGACTGGGATATCCGATTACCATTCTCAAGATTTGGCCATGGATCACAAAGGTCTCGACGGCAAGGGGTGCTACAACGCCGGCCATGGGTTGAGCACACGTCCATCTCGGCCAAACTCACGGTGCCGAGGGTCACTTACACTTTGTACTGCGTTCGTACTGCATGCATACTACGGGCGTACTGCGGACGTACTGCGGGCATACTACAGGCATACTGCGGGTGTACTACAGGGATACTACGGGCATACTGCGGGCGTACTGCGGAGCGATCCCTTTCAATGGGAGTGGAGGAACTTCTATTTCATTGCAAAGATCCTAACTATGCTCTACATGTACCTTCGTGCCCGAGGTCAGGTTCCGGGGCTTGTGAATGCCCCGGTCGAGGAGGTCCTGTCTGACAGTGAAGAAGACGATGAAGAGGAAGACAGCAACCCTTGGAAGCGCGTCAAGAATGAGCCCGAAGAAATGCAGAACCGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.28

Weight (kDa)

7.74

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 228
AccII CGCG 2 cut(s) 77, 549
AciI CCGC 5 cut(s) 290, 301, 323, 356, 367
AclWI GGATC 6 cut(s) 43, 56, 105, 156, 368, 412
AcoI YGGCCR 3 cut(s) 141, 187, 215
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 7 cut(s) 253, 264, 286, 297, 330, 363, 440
AfiI CCNNNNNNNGG 5 cut(s) 38, 192, 384, 457, 487
AflIII ACRYGT 2 cut(s) 203, 435
AgsI TTSAA 1 cut(s) 383
AjiI CACGTC 1 cut(s) 206
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 6 cut(s) 43, 56, 105, 156, 368, 412
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 3 cut(s) 141, 187, 215
AspLEI GCGC 1 cut(s) 549
AspS9I GGNCC 1 cut(s) 493
AsuC2I CCSGG 2 cut(s) 465, 482
AvaI CYCGRG 1 cut(s) 450
AvaII GGWCC 1 cut(s) 493
BaeGI GKGCMC 1 cut(s) 451
BalI TGGCCA 1 cut(s) 143
BamHI GGATCC 1 cut(s) 48
BanI GGYRCC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 564
BbsI GAAGAC 2 cut(s) 519, 534
Bbv12I GWGCWC 1 cut(s) 203
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 181
BciVI GTATCC 1 cut(s) 332
BcnI CCSGG 2 cut(s) 465, 482
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 2 cut(s) 310, 332
BfuI GTATCC 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 465, 482
Bme18I GGWCC 1 cut(s) 493
BmeT110I CYCGRG 1 cut(s) 450
BmgBI CACGTC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 493
BmiI GGNNCC 3 cut(s) 50, 230, 462
BmrFI CCNGG 2 cut(s) 465, 482
BmrI ACTGGG 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 120
BpiI GAAGAC 2 cut(s) 519, 534
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 2 cut(s) 465, 482
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 8 cut(s) 36, 144, 190, 232, 451, 464, 480, 539
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 192, 384, 457, 487
Bse118I RCCGGY 2 cut(s) 185, 579
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 408
BseDI CCNNGG 8 cut(s) 36, 144, 190, 232, 451, 464, 480, 539
BseLI CCNNNNNNNGG 5 cut(s) 38, 192, 384, 457, 487
BseMI GCAATG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 451
Bsh1236I CGCG 2 cut(s) 77, 549
Bsh1285I CGRYCG 1 cut(s) 486
BshFI GGCC 3 cut(s) 143, 189, 217
BshNI GGYRCC 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 4 cut(s) 186, 464, 482, 580
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 5 cut(s) 38, 192, 384, 457, 487
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 54
BsmI GAATGC 2 cut(s) 89, 481
BsnI GGCC 3 cut(s) 143, 189, 217
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 450
Bsp1286I GDGCHC 3 cut(s) 203, 451, 564
Bsp143I GATC 5 cut(s) 48, 97, 148, 373, 417
Bsp19I CCATGG 2 cut(s) 144, 190
BspACI CCGC 5 cut(s) 290, 301, 323, 356, 367
BspANI GGCC 3 cut(s) 143, 189, 217
BspFNI CGCG 2 cut(s) 77, 549
BspLI GGNNCC 3 cut(s) 50, 230, 462
BspPI GGATC 6 cut(s) 43, 56, 105, 156, 368, 412
BspT107I GGYRCC 1 cut(s) 228
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 408
BsrFI RCCGGY 2 cut(s) 185, 579
BsrI ACTGG 1 cut(s) 115
BssAI RCCGGY 2 cut(s) 185, 579
BssECI CCNNGG 8 cut(s) 36, 144, 190, 232, 451, 464, 480, 539
BssMI GATC 5 cut(s) 48, 97, 148, 373, 417
BssT1I CCWWGG 4 cut(s) 36, 144, 190, 539
Bst4CI ACNGT 2 cut(s) 228, 506
Bst6I CTCTTC 2 cut(s) 69, 516
BstAPI GCANNNNNTGC 1 cut(s) 174
BstC8I GCNNGC 6 cut(s) 14, 79, 187, 270, 303, 358
BstDSI CCRYGG 2 cut(s) 144, 190
BstFNI CGCG 2 cut(s) 77, 549
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 5 cut(s) 51, 100, 151, 376, 420
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 5 cut(s) 48, 97, 148, 373, 417
BstMCI CGRYCG 1 cut(s) 486
BstMWI GCNNNNNNNGC 2 cut(s) 174, 580
BstNSI RCATGY 2 cut(s) 272, 439
BstSCI CCNGG 2 cut(s) 463, 480
BstSFI CTRYAG 2 cut(s) 310, 332
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 2 cut(s) 77, 549
BstV2I GAAGAC 2 cut(s) 519, 534
BstX2I RGATCY 2 cut(s) 48, 417
BstYI RGATCY 2 cut(s) 48, 417
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 3 cut(s) 143, 189, 217
BtgI CCRYGG 2 cut(s) 144, 190
BtrI CACGTC 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 6 cut(s) 14, 79, 187, 270, 303, 358
CfoI GCGC 1 cut(s) 549
Cfr10I RCCGGY 2 cut(s) 185, 579
Cfr13I GGNCC 1 cut(s) 493
CseI GACGC 1 cut(s) 538
Csp6I GTAC 7 cut(s) 252, 263, 285, 296, 329, 362, 439
CspCI CAANNNNNGTGG 2 cut(s) 371, 406
CviAII CATG 5 cut(s) 24, 145, 191, 269, 436
CviJI RGCY 7 cut(s) 70, 81, 143, 189, 217, 469, 562
CviKI_1 RGCY 7 cut(s) 70, 81, 143, 189, 217, 469, 562
CviQI GTAC 7 cut(s) 252, 263, 285, 296, 329, 362, 439
DpnI GATC 5 cut(s) 50, 99, 150, 375, 419
DpnII GATC 5 cut(s) 48, 97, 148, 373, 417
EaeI YGGCCR 3 cut(s) 141, 187, 215
Eam1104I CTCTTC 2 cut(s) 69, 516
EarI CTCTTC 2 cut(s) 69, 516
Eco130I CCWWGG 4 cut(s) 36, 144, 190, 539
Eco24I GRGCYC 1 cut(s) 564
Eco31I GGTCTC 1 cut(s) 164
Eco32I GATATC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 493
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 4 cut(s) 36, 144, 190, 539
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 564
ErhI CCWWGG 4 cut(s) 36, 144, 190, 539
FaeI CATG 5 cut(s) 27, 148, 194, 272, 439
FaqI GGGAC 1 cut(s) 54
FatI CATG 5 cut(s) 23, 144, 190, 268, 435
FauI CCCGC 3 cut(s) 294, 316, 349
FriOI GRGCYC 1 cut(s) 564
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 548
HaeIII GGCC 3 cut(s) 143, 189, 217
HapII CCGG 4 cut(s) 186, 464, 482, 580
HgaI GACGC 1 cut(s) 538
HhaI GCGC 1 cut(s) 549
Hin1II CATG 5 cut(s) 27, 148, 194, 272, 439
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HpaII CCGG 4 cut(s) 186, 464, 482, 580
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 4 cut(s) 33, 108, 121, 502
Hpy188III TCNNGA 3 cut(s) 134, 161, 553
Hpy8I GTNNAC 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 2 cut(s) 228, 506
HpyCH4IV ACGT 2 cut(s) 205, 294
HpyCH4V TGCA 6 cut(s) 23, 89, 268, 272, 413, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 580
HpySE526I ACGT 2 cut(s) 205, 294
Hsp92II CATG 5 cut(s) 27, 148, 194, 272, 439
HspAI GCGC 1 cut(s) 547
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Kzo9I GATC 5 cut(s) 48, 97, 148, 373, 417
LmnI GCTCC 2 cut(s) 75, 369
LpnPI CCDG 8 cut(s) 96, 199, 298, 320, 443, 477, 495, 509
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 205, 294
MaeIII GTNAC 1 cut(s) 237
MalI GATC 5 cut(s) 50, 99, 150, 375, 419
MboI GATC 5 cut(s) 48, 97, 148, 373, 417
MboII GAAGA 6 cut(s) 56, 521, 524, 533, 539, 578
MflI RGATCY 2 cut(s) 48, 417
MhlI GDGCHC 3 cut(s) 203, 451, 564
MlsI TGGCCA 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 6 cut(s) 227, 387, 446, 481, 484, 517
Mox20I TGGCCA 1 cut(s) 143
Mph1103I ATGCAT 1 cut(s) 274
MroNI GCCGGC 1 cut(s) 185
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 4 cut(s) 186, 464, 482, 580
MspR9I CCNGG 2 cut(s) 465, 482
Mva1269I GAATGC 2 cut(s) 89, 481
MvnI CGCG 2 cut(s) 77, 549
MwoI GCNNNNNNNGC 2 cut(s) 174, 580
NaeI GCCGGC 1 cut(s) 187
NciI CCSGG 2 cut(s) 465, 482
NcoI CCATGG 2 cut(s) 144, 190
NdeII GATC 5 cut(s) 48, 97, 148, 373, 417
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 5 cut(s) 27, 148, 194, 272, 439
NlaIV GGNNCC 3 cut(s) 50, 230, 462
NmeAIII GCCGAG 2 cut(s) 193, 257
NmuCI GTSAC 1 cut(s) 237
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 2 cut(s) 272, 439
PaeI GCATGC 1 cut(s) 272
PciI ACATGT 1 cut(s) 435
PctI GAATGC 2 cut(s) 89, 481
PdiI GCCGGC 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 493
PscI ACATGT 1 cut(s) 435
Psp5II RGGWCCY 1 cut(s) 493
PspN4I GGNNCC 3 cut(s) 50, 230, 462
PspPI GGNCC 1 cut(s) 493
PspPPI RGGWCCY 1 cut(s) 493
PsuI RGATCY 2 cut(s) 48, 417
RsaI GTAC 7 cut(s) 253, 264, 286, 297, 330, 363, 440
RsaNI GTAC 7 cut(s) 252, 263, 285, 296, 329, 362, 439
Sau3AI GATC 5 cut(s) 48, 97, 148, 373, 417
Sau96I GGNCC 1 cut(s) 493
ScrFI CCNGG 2 cut(s) 465, 482
SduI GDGCHC 3 cut(s) 203, 451, 564
SetI ASST 8 cut(s) 72, 160, 208, 297, 444, 457, 462, 495
SfcI CTRYAG 2 cut(s) 310, 332
SinI GGWCC 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
SphI GCATGC 1 cut(s) 272
SsiI CCGC 5 cut(s) 290, 301, 323, 356, 367
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 463, 480
StyI CCWWGG 4 cut(s) 36, 144, 190, 539
TaaI ACNGT 2 cut(s) 228, 506
TaiI ACGT 2 cut(s) 208, 297
TaqI TCGA 2 cut(s) 162, 486
TatI WGTACW 2 cut(s) 251, 328
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 2 cut(s) 397, 534
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 493
XceI RCATGY 2 cut(s) 272, 439
XspI CTAG 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.