AT2G11015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004040
Physical Location & Seq
Forward (+)
4366200 .. 4366640
441 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G11015.1

Sequence Viewer

Length: 441 bp
ATGGAGTTTAACCTTCGATGTTCGGAGTCCATGCCAGACTTTTCTAGGGTCGGAATGATGGATGAGGACATCCCAAACGTGCGGGGAAGAGGGCCTTCTCAACCTCGTGGCTTCTTAAGGTCCCAAATCCGAGCTCCATGTGCATTGATGAAGGGACTTTCTGACATAGACCAAGAAATCACGATGGCATTCATCAAGGCTCTTGCGGTTCAGCACCAGAAGCGTTCGTTGGAAAGGAGGAAAATCCGAAAAAAGATTAACCGAATATTACGTAGGGTTATTGCGATATCGAGGGAACTTCACACCCTCAACTCTCACCCCGGGGACTGGATTGAGCTTGGAATTTCCGAATTTGATCGCATACCGGATTGTATGATGCCGATTCTTGAACTCGCTGGTCAAGGAGTCCAACTGTTCTACAAGTCGAGAAGAGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

10.02

Isoelectric Point (pI)

60.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3287 PF11690 22 - 136 5e-49 Protein of unknown function (DUF3287)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 206
AcsI RAATTY 2 cut(s) 342, 350
AfiI CCNNNNNNNGG 1 cut(s) 327
AflII CTTAAG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 389
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 2 cut(s) 134, 337
AluI AGCT 2 cut(s) 134, 337
Alw21I GWGCWC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 92
ApoI RAATTY 2 cut(s) 342, 350
Asp700I GAANNNNTTC 1 cut(s) 433
AspS9I GGNCC 2 cut(s) 92, 120
AsuC2I CCSGG 2 cut(s) 321, 322
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 136
BauI CACGAG 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 136
BccI CCATC 2 cut(s) 52, 178
BcnI CCSGG 2 cut(s) 321, 322
BfaI CTAG 1 cut(s) 45
BfrI CTTAAG 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 321, 322
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 92, 120
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 2 cut(s) 321, 322
BmsI GCATC 1 cut(s) 366
BpuMI CCSGG 2 cut(s) 321, 322
BsaAI YACGTR 1 cut(s) 272
BsaJI CCNNGG 3 cut(s) 319, 320, 321
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 1 cut(s) 332
BseDI CCNNGG 3 cut(s) 319, 320, 321
BseGI GGATG 2 cut(s) 67, 69
BseLI CCNNNNNNNGG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 332
BshFI GGCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 2 cut(s) 321, 365
BslFI GGGAC 3 cut(s) 106, 168, 338
BslI CCNNNNNNNGG 1 cut(s) 327
BsmFI GGGAC 3 cut(s) 106, 168, 338
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 2 cut(s) 82, 206
BspANI GGCC 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 122
BspTI CTTAAG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 3 cut(s) 319, 320, 321
BssMI GATC 1 cut(s) 355
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 414
Bst6I CTCTTC 2 cut(s) 82, 424
BstAFI CTTAAG 1 cut(s) 115
BstBAI YACGTR 1 cut(s) 272
BstF5I GGATG 2 cut(s) 67, 69
BstKTI GATC 1 cut(s) 358
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 140, 220
BstSCI CCNGG 2 cut(s) 319, 320
BstSNI TACGTA 1 cut(s) 272
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 67, 69
Cfr13I GGNCC 2 cut(s) 92, 120
Cfr9I CCCGGG 1 cut(s) 320
CviAII CATG 2 cut(s) 31, 138
CviJI RGCY 5 cut(s) 94, 111, 134, 200, 337
CviKI_1 RGCY 5 cut(s) 94, 111, 134, 200, 337
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eam1104I CTCTTC 2 cut(s) 82, 424
EarI CTCTTC 2 cut(s) 82, 424
Ecl136II GAGCTC 1 cut(s) 134
Eco105I TACGTA 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 134
EcoO109I RGGNCCY 2 cut(s) 92, 120
EcoRV GATATC 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 2 cut(s) 34, 141
FaiI YATR 5 cut(s) 32, 139, 167, 362, 374
FalI AAGNNNNNCTT 3 cut(s) 79, 111, 421
FaqI GGGAC 3 cut(s) 106, 168, 338
FatI CATG 2 cut(s) 30, 137
FauI CCCGC 1 cut(s) 75
FokI GGATG 2 cut(s) 56, 74
FriOI GRGCYC 1 cut(s) 136
FspBI CTAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 321, 365
Hin1II CATG 2 cut(s) 34, 141
HinfI GANTC 3 cut(s) 26, 382, 405
HpaII CCGG 2 cut(s) 321, 365
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 6 cut(s) 25, 53, 131, 163, 248, 349
Hpy188III TCNNGA 3 cut(s) 181, 386, 426
HpyAV CCTTC 3 cut(s) 23, 105, 145
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4IV ACGT 2 cut(s) 78, 271
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 220
HpySE526I ACGT 2 cut(s) 78, 271
Hsp92II CATG 2 cut(s) 34, 141
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 48, 230, 313, 334, 378, 381
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 45
MaeII ACGT 2 cut(s) 78, 271
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 99, 441
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 2 cut(s) 342, 350
MlyI GAGTC 2 cut(s) 35, 414
MmeI TCCRAC 3 cut(s) 31, 210, 433
MnlI CCTC 6 cut(s) 58, 83, 114, 231, 285, 317
MroXI GAANNNNTTC 1 cut(s) 433
MseI TTAA 4 cut(s) 9, 116, 258, 439
MspCI CTTAAG 1 cut(s) 115
MspI CCGG 2 cut(s) 321, 365
MspR9I CCNGG 2 cut(s) 321, 322
Mva1269I GAATGC 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 140, 220
NciI CCSGG 2 cut(s) 321, 322
NdeII GATC 1 cut(s) 355
NlaIII CATG 2 cut(s) 34, 141
NlaIV GGNNCC 1 cut(s) 122
PctI GAATGC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 433
PfeI GAWTC 1 cut(s) 382
PleI GAGTC 2 cut(s) 34, 413
PpsI GAGTC 2 cut(s) 34, 413
Ppu21I YACGTR 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 92, 120
PspPPI RGGWCCY 1 cut(s) 120
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 4 cut(s) 9, 116, 258, 439
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 2 cut(s) 92, 120
SchI GAGTC 2 cut(s) 35, 414
ScrFI CCNGG 2 cut(s) 321, 322
SduI GDGCHC 1 cut(s) 136
SetI ASST 7 cut(s) 15, 81, 106, 122, 136, 274, 339
SfaNI GCATC 1 cut(s) 366
SinI GGWCC 1 cut(s) 120
SmaI CCCGGG 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SnaBI TACGTA 1 cut(s) 272
Sse9I AATT 2 cut(s) 342, 350
SsiI CCGC 2 cut(s) 82, 206
SspI AATATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 45
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 2 cut(s) 319, 320
TaaI ACNGT 1 cut(s) 414
TaiI ACGT 2 cut(s) 81, 274
TaqI TCGA 3 cut(s) 16, 290, 425
TasI AATT 2 cut(s) 342, 350
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 4 cut(s) 9, 116, 258, 439
Tru9I TTAA 4 cut(s) 9, 116, 258, 439
TspDTI ATGAA 2 cut(s) 164, 181
TspMI CCCGGG 1 cut(s) 320
Vha464I CTTAAG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 2 cut(s) 342, 350
XmaI CCCGGG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 433
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.