AT4G07740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004040
Physical Location & Seq
Forward (+)
4539638 .. 4540682
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G07740.1

Sequence Viewer

Length: 597 bp
ATGGCAAATGAAGGAGTGTCTCTTATCTGCCCCCTCGACCTAGGCATCCCTCTGTTCTTATACGGTGACAGTTTCGACCCGACCAGTGTCCTCTTCCCTCACTATGTCTTCTACTTTCCTCCAAAGGATAAAAAAGAATCATACGATTTTGCGGACAAGGTCATTGAGAAGCACCGTCGTGCTTGCGACGAGAGGCAGCATCTAGGCCTTAAAAGGCAGACGCTCGAAGCTCGCATCGCGCAGATGGAGAGGAAAATGTATCTTGGCAGCCAAGGTCGGGTCCCTGATCCCAATCGCGTACCAGTCAAAGTAATTCCCTTTGACAGCGAAGAGGGCGATGAAGAAGAGGATATAAACACCTGGAAGCGTGTAAAAACGAACCCAAGGTGGGCGACAAAACCGAGGCGTCCACTTCAAAATATGGAGATCGACCTTTACAGTACGGAGACTGTGCCAGATCACTCCGCAGACGGAATGATACGGGAAGAAGTTCCAAAAGTTCCGGACCAACGACCCCCTCTTCCTCGCGGATACTTTCGCTCTGAAATTTGGACTCCGTGCACGCTAATCAAAGATCTTCCAGAAAGAGACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

23.11

Weight (kDa)

5.67

Isoelectric Point (pI)

64.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3287 PF11690 3 - 104 1e-37 Protein of unknown function (DUF3287)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 239, 297, 528
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 3 cut(s) 152, 465, 528
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 406
AfaI GTAC 2 cut(s) 300, 442
AfiI CCNNNNNNNGG 2 cut(s) 277, 388
AgsI TTSAA 1 cut(s) 416
AjnI CCWGG 1 cut(s) 359
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 3 cut(s) 24, 440, 582
Alw44I GTGCAC 1 cut(s) 559
AlwI GGATC 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 1 cut(s) 205
ApaLI GTGCAC 1 cut(s) 559
ApeKI GCWGC 2 cut(s) 196, 267
ApoI RAATTY 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 489
AspA2I CCTAGG 1 cut(s) 40
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 280, 505
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 2 cut(s) 280, 505
AvrII CCTAGG 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 2 cut(s) 208, 279
BccI CCATC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 361
BciVI GTATCC 1 cut(s) 524
BcoDI GTCTC 3 cut(s) 24, 440, 582
BfaI CTAG 2 cut(s) 41, 203
BfuI GTATCC 1 cut(s) 524
BglII AGATCT 1 cut(s) 574
BisI GCNGC 2 cut(s) 197, 268
BlnI CCTAGG 1 cut(s) 40
BlsI GCNGC 2 cut(s) 198, 269
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 2 cut(s) 280, 505
BmgT120I GGNCC 2 cut(s) 280, 505
BmiI GGNNCC 2 cut(s) 281, 282
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 3 cut(s) 54, 208, 243
BoxI GACNNNNGTC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 582
BsaJI CCNNGG 4 cut(s) 40, 271, 383, 401
BsaWI WCCGGW 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 388
Bse1I ACTGG 2 cut(s) 84, 302
Bse8I GATNNNNATC 1 cut(s) 291
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 4 cut(s) 40, 271, 383, 401
BseGI GGATG 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 277, 388
BseNI ACTGG 2 cut(s) 84, 302
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 2 cut(s) 208, 279
Bsh1236I CGCG 3 cut(s) 239, 297, 528
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 563
BsiSI CCGG 1 cut(s) 503
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 277, 388
BsmAI GTCTC 3 cut(s) 24, 440, 582
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 563
Bsp13I TCCGGA 1 cut(s) 502
Bsp143I GATC 4 cut(s) 286, 426, 457, 574
BspACI CCGC 3 cut(s) 152, 465, 528
BspANI GGCC 1 cut(s) 207
BspEI TCCGGA 1 cut(s) 502
BspFNI CGCG 3 cut(s) 239, 297, 528
BspLI GGNNCC 2 cut(s) 281, 282
BspPI GGATC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 582
BsrI ACTGG 2 cut(s) 84, 302
BssECI CCNNGG 4 cut(s) 40, 271, 383, 401
BssMI GATC 4 cut(s) 286, 426, 457, 574
BssNI GRCGYC 1 cut(s) 406
BssT1I CCWWGG 3 cut(s) 40, 271, 383
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 5 cut(s) 65, 71, 176, 440, 451
Bst6I CTCTTC 4 cut(s) 98, 324, 339, 525
BstACI GRCGYC 1 cut(s) 406
BstC8I GCNNGC 3 cut(s) 184, 232, 563
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 3 cut(s) 239, 297, 528
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 4 cut(s) 289, 429, 460, 577
BstMAI GTCTC 3 cut(s) 24, 440, 582
BstMBI GATC 4 cut(s) 286, 426, 457, 574
BstMWI GCNNNNNNNGC 2 cut(s) 236, 333
BstNI CCWGG 1 cut(s) 361
BstPAI GACNNNNGTC 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 359
BstSLI GKGCMC 1 cut(s) 563
BstUI CGCG 3 cut(s) 239, 297, 528
BstV1I GCAGC 2 cut(s) 208, 279
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuI GTATCC 1 cut(s) 524
BsuRI GGCC 1 cut(s) 207
BtgZI GCGATG 2 cut(s) 220, 351
BtsCI GGATG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 3 cut(s) 184, 232, 563
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 280, 505
CseI GACGC 2 cut(s) 229, 395
Csp6I GTAC 2 cut(s) 299, 441
CviJI RGCY 3 cut(s) 207, 230, 270
CviKI_1 RGCY 3 cut(s) 207, 230, 270
CviQI GTAC 2 cut(s) 299, 441
DpnI GATC 4 cut(s) 288, 428, 459, 576
DpnII GATC 4 cut(s) 286, 426, 457, 574
Eam1104I CTCTTC 4 cut(s) 98, 324, 339, 525
EarI CTCTTC 4 cut(s) 98, 324, 339, 525
Eco130I CCWWGG 3 cut(s) 40, 271, 383
Eco147I AGGCCT 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 280, 505
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 359
EcoT14I CCWWGG 3 cut(s) 40, 271, 383
ErhI CCWWGG 3 cut(s) 40, 271, 383
FaiI YATR 5 cut(s) 61, 105, 142, 353, 422
FaqI GGGAC 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 197, 268
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 197, 268
FspBI CTAG 2 cut(s) 41, 203
GlaI GCGC 1 cut(s) 240
GluI GCNGC 2 cut(s) 197, 268
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 503
HgaI GACGC 2 cut(s) 229, 395
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 406
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 2 cut(s) 137, 553
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 410, 561
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 2 cut(s) 503, 581
Hpy8I GTNNAC 2 cut(s) 410, 561
Hpy99I CGWCG 2 cut(s) 180, 191
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 5 cut(s) 65, 71, 176, 440, 451
HpyCH4V TGCA 1 cut(s) 561
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 333
Hsp92I GRCGYC 1 cut(s) 406
HspAI GCGC 1 cut(s) 239
KflI GGGWCCC 1 cut(s) 280
Kpn2I TCCGGA 1 cut(s) 502
Kzo9I GATC 4 cut(s) 286, 426, 457, 574
LpnPI CCDG 7 cut(s) 97, 297, 315, 346, 373, 468, 516
Lsp1109I GCAGC 2 cut(s) 208, 279
LweI GCATC 3 cut(s) 54, 208, 243
MaeI CTAG 2 cut(s) 41, 203
MaeIII GTNAC 1 cut(s) 65
MalI GATC 4 cut(s) 288, 428, 459, 576
MboI GATC 4 cut(s) 286, 426, 457, 574
MboII GAAGA 8 cut(s) 85, 100, 341, 353, 356, 497, 512, 569
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 563
MluCI AATT 2 cut(s) 312, 546
MlyI GAGTC 1 cut(s) 547
MroI TCCGGA 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 489
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 3 cut(s) 239, 297, 528
MwoI GCNNNNNNNGC 2 cut(s) 236, 333
NdeII GATC 4 cut(s) 286, 426, 457, 574
NlaIV GGNNCC 2 cut(s) 281, 282
NmuCI GTSAC 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 177
PceI AGGCCT 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 137
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 198, 269
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
PpuMI RGGWCCY 1 cut(s) 280
PshAI GACNNNNGTC 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 281, 282
PspPI GGNCC 2 cut(s) 280, 505
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 1 cut(s) 574
PsyI GACNNNGTC 1 cut(s) 158
RsaI GTAC 2 cut(s) 300, 442
RsaNI GTAC 2 cut(s) 299, 441
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 197, 268
Sau3AI GATC 4 cut(s) 286, 426, 457, 574
Sau96I GGNCC 2 cut(s) 280, 505
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 563
SetI ASST 7 cut(s) 42, 162, 232, 277, 362, 389, 435
SfaNI GCATC 3 cut(s) 54, 208, 243
SinI GGWCC 2 cut(s) 280, 505
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 2 cut(s) 312, 546
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 3 cut(s) 152, 465, 528
SspMI CTAG 2 cut(s) 41, 203
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 3 cut(s) 40, 271, 383
TaaI ACNGT 5 cut(s) 65, 71, 176, 440, 451
TaqI TCGA 4 cut(s) 36, 75, 225, 429
TasI AATT 2 cut(s) 312, 546
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 196, 267
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 24, 354
TspGWI ACGGA 3 cut(s) 458, 486, 546
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 158
VneI GTGCAC 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 280, 505
XapI RAATTY 1 cut(s) 546
XmaJI CCTAGG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 2 cut(s) 41, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.