AT3G33293

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004040
Physical Location & Seq
Reverse (-)
14037060 .. 14037626
567 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G33293.1

Sequence Viewer

Length: 438 bp
ATGGAATTGATTCAAGGGGCTATCCTCTTCATTCAAACTGAGAAGGCCAGATCGGAGCTGGAGTCAGACATTAAGGAGCACGAAAGTAACCTGCTTCTGTTGGACCAAACCCTTGAGGAAGATTTCTCTGAGGAACAAGAAAGGTCCAAACTGGAGGCTGTTTTAGCTGAGAAAAGAGGCCACCTTGCTTCTCTTCCCACCTTGTCCTTTAACCCTCAACACTTCGAGGATTTTTACATCGAATCACTGCCTTTGAGTGAATCAGGCTTAGATTGGGCTGTGATCATCCCGGATGTTGAACATGAAGCCGGAACTGAGCCGGGAAACTCTTCTAAGCTACTCTCTGCCAGTGAACCAACCAAAACTGAGTCAGCTGTTGTTGAACCAACCGAAGCCGATCCGGCTATCGTTGACCCCGAGAAGATTACGGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.06

Weight (kDa)

4.21

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 99
AclWI GGATC 1 cut(s) 392
AgsI TTSAA 4 cut(s) 14, 35, 299, 383
AluBI AGCT 4 cut(s) 58, 167, 337, 374
AluI AGCT 4 cut(s) 58, 167, 337, 374
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 2 cut(s) 45, 178
Asp700I GAANNNNTTC 2 cut(s) 9, 328
AspS9I GGNCC 2 cut(s) 103, 144
AsuC2I CCSGG 2 cut(s) 290, 321
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 2 cut(s) 103, 144
Bbv12I GWGCWC 1 cut(s) 81
BclI TGATCA 1 cut(s) 282
BcnI CCSGG 2 cut(s) 290, 321
BfaI CTAG 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 401
Bme1390I CCNGG 2 cut(s) 290, 321
Bme18I GGWCC 2 cut(s) 103, 144
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 103, 144
BmrFI CCNGG 2 cut(s) 290, 321
BpmI CTGGAG 2 cut(s) 80, 173
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 2 cut(s) 290, 321
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bse1I ACTGG 2 cut(s) 156, 348
BseGI GGATG 2 cut(s) 285, 298
BseMII CTCAG 5 cut(s) 30, 120, 159, 306, 357
BseNI ACTGG 2 cut(s) 156, 348
BshFI GGCC 2 cut(s) 47, 180
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 4 cut(s) 290, 309, 320, 401
BsnI GGCC 2 cut(s) 47, 180
BsoBI CYCGRG 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 50, 282, 397
BspANI GGCC 2 cut(s) 47, 180
BspCNI CTCAG 5 cut(s) 31, 121, 160, 307, 358
BspMI ACCTGC 1 cut(s) 99
BspPI GGATC 1 cut(s) 392
BsrI ACTGG 2 cut(s) 156, 348
BssMI GATC 3 cut(s) 50, 282, 397
Bst6I CTCTTC 3 cut(s) 32, 198, 334
BstDEI CTNAG 7 cut(s) 39, 129, 168, 268, 315, 333, 366
BstF5I GGATG 2 cut(s) 285, 298
BstKTI GATC 3 cut(s) 53, 285, 400
BstMBI GATC 3 cut(s) 50, 282, 397
BstMWI GCNNNNNNNGC 2 cut(s) 164, 401
BstSCI CCNGG 2 cut(s) 288, 319
BsuRI GGCC 2 cut(s) 47, 180
BtsCI GGATG 2 cut(s) 285, 298
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 245, 355
BveI ACCTGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 103, 144
CviAII CATG 1 cut(s) 302
DdeI CTNAG 7 cut(s) 39, 129, 168, 268, 315, 333, 366
DpnI GATC 3 cut(s) 52, 284, 399
DpnII GATC 3 cut(s) 50, 282, 397
Eam1104I CTCTTC 3 cut(s) 32, 198, 334
EarI CTCTTC 3 cut(s) 32, 198, 334
Eco47I GGWCC 2 cut(s) 103, 144
Eco88I CYCGRG 1 cut(s) 416
FaeI CATG 1 cut(s) 305
FaiI YATR 1 cut(s) 303
FatI CATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 282
FokI GGATG 2 cut(s) 272, 305
FspBI CTAG 1 cut(s) 436
GsuI CTGGAG 2 cut(s) 80, 173
HaeIII GGCC 2 cut(s) 47, 180
HapII CCGG 4 cut(s) 290, 309, 320, 401
Hin1II CATG 1 cut(s) 305
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 6 cut(s) 10, 62, 242, 260, 368, 431
HpaII CCGG 4 cut(s) 290, 309, 320, 401
Hpy166II GTNNAC 2 cut(s) 353, 412
Hpy188I TCNGA 3 cut(s) 55, 67, 130
Hpy8I GTNNAC 2 cut(s) 353, 412
HpyAV CCTTC 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 401
HpyF3I CTNAG 7 cut(s) 39, 129, 168, 268, 315, 333, 366
Hsp92II CATG 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 3 cut(s) 50, 282, 397
LmnI GCTCC 2 cut(s) 55, 76
MaeI CTAG 1 cut(s) 436
MaeIII GTNAC 1 cut(s) 86
MalI GATC 3 cut(s) 52, 284, 399
MboI GATC 3 cut(s) 50, 282, 397
MboII GAAGA 5 cut(s) 19, 131, 185, 321, 433
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 71, 377
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 7 cut(s) 35, 109, 124, 148, 170, 220, 225
MroXI GAANNNNTTC 2 cut(s) 9, 328
MseI TTAA 2 cut(s) 72, 210
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 4 cut(s) 290, 309, 320, 401
MspR9I CCNGG 2 cut(s) 290, 321
MwoI GCNNNNNNNGC 2 cut(s) 164, 401
NciI CCSGG 2 cut(s) 290, 321
NdeII GATC 3 cut(s) 50, 282, 397
NlaIII CATG 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PdmI GAANNNNTTC 2 cut(s) 9, 328
PfeI GAWTC 4 cut(s) 10, 242, 260, 431
PfoI TCCNGGA 1 cut(s) 288
PleI GAGTC 2 cut(s) 70, 376
PpsI GAGTC 2 cut(s) 70, 376
PspPI GGNCC 2 cut(s) 103, 144
PvuII CAGCTG 1 cut(s) 374
SaqAI TTAA 2 cut(s) 72, 210
Sau3AI GATC 3 cut(s) 50, 282, 397
Sau96I GGNCC 2 cut(s) 103, 144
SchI GAGTC 2 cut(s) 71, 377
ScrFI CCNGG 2 cut(s) 290, 321
SduI GDGCHC 1 cut(s) 81
SetI ASST 8 cut(s) 60, 93, 146, 169, 186, 203, 339, 376
SinI GGWCC 2 cut(s) 103, 144
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 1 cut(s) 5
SspMI CTAG 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 288, 319
TaqI TCGA 2 cut(s) 225, 240
TasI AATT 1 cut(s) 5
TfiI GAWTC 4 cut(s) 10, 242, 260, 431
Tru1I TTAA 2 cut(s) 72, 210
Tru9I TTAA 2 cut(s) 72, 210
TscAI CASTG 2 cut(s) 252, 355
TspDTI ATGAA 2 cut(s) 19, 318
TspRI CASTG 2 cut(s) 252, 355
VpaK11BI GGWCC 2 cut(s) 103, 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmnI GAANNNNTTC 2 cut(s) 9, 328
XspI CTAG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.