AT5G33898

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004040
Physical Location & Seq
Forward (+)
12787599 .. 12788778
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G33898.1

Sequence Viewer

Length: 747 bp
ATGGAAAACAAAGGAGCCTCCACCGTTTGTCCTCTCGATCCTGGCAGTCCACTGTTCTTTCCTCATGCCGCTTTCCACTTCCCCCCGAAGGATAAGAAAGAGGCGTACGACTTCATCGACAAGGCAGTGTCTAGGCCTCAAAAGGCAAACGCTCGAGGCCTGCATCGCTCGTGTAGAAAGGAAGGATCCCGACTATGCTCTGGATGTATCTATGCTCGCGATCAAGTCCTCGGACCCGTGAACGCTCCTGTCGAGGTGATCCCATCCGACAGCGAAGAAGATGACGACGAGGATGAGGACAGCAACCCCTGGAAGCGTGTGAAAAATGACAAGAAAAACGAAGCGTCCAATTCGAACCTTGAGCCGGCGATGAAGGAGCTTGGCAAACTGGATGGTGTGAGTGTTTCCGCGAATAACTTTGATCTTAAATGGGATTGCGACCTCGAAGGGGTCGGAATGATGGATGAGGACATCCCAAACGTGCCGGACAGAAAGCCTTCTCCACCTCGCGACTTCTTTAGGTCCCAAATCCGAGCTCCATGTGCACTGATCAAGGAACTTTCAGACAGAGACCAAGAAATCGCGATGGCATTCATCAAAGATCTTGCAGTTCAGCATCAGAAGCGTTCATTAGAAAAGAAGAAACTGCAAAAGAAGATCAATCAGATGCTACGAAGGGTCACCGCGATATCAAGGGAGCTTCACACCCTTAACACCATCCTTGACCTCGCTAGCCAAGGAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.85

Weight (kDa)

6.25

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3287 PF11690 19 - 52 5e-06 Protein of unknown function (DUF3287)
DUF3287 PF11690 164 - 239 2.3e-25 Protein of unknown function (DUF3287)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 219, 410, 510, 584, 686
AciI CCGC 3 cut(s) 69, 408, 684
AclWI GGATC 4 cut(s) 32, 180, 193, 253
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 3 cut(s) 88, 364, 448
AjnI CCWGG 2 cut(s) 40, 308
AluBI AGCT 3 cut(s) 379, 536, 700
AluI AGCT 3 cut(s) 379, 536, 700
Alw21I GWGCWC 2 cut(s) 538, 547
Alw26I GTCTC 1 cut(s) 564
Alw44I GTGCAC 1 cut(s) 543
AlwI GGATC 4 cut(s) 32, 180, 193, 253
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 2 cut(s) 134, 157
ApaLI GTGCAC 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 233, 522
AsuHPI GGTGA 2 cut(s) 268, 673
AsuII TTCGAA 1 cut(s) 353
AsuNHI GCTAGC 1 cut(s) 731
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 2 cut(s) 233, 522
BaeGI GKGCMC 1 cut(s) 547
BamHI GGATCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 538
BauI CACGAG 1 cut(s) 169
Bbv12I GWGCWC 2 cut(s) 538, 547
BccI CCATC 5 cut(s) 271, 386, 454, 580, 725
BciT130I CCWGG 2 cut(s) 42, 310
BclI TGATCA 1 cut(s) 549
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 2 cut(s) 132, 732
BglII AGATCT 1 cut(s) 601
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 42, 310
Bme18I GGWCC 2 cut(s) 233, 522
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 233, 522
BmiI GGNNCC 4 cut(s) 16, 187, 235, 524
BmrFI CCNGG 2 cut(s) 42, 310
BmsI GCATC 3 cut(s) 172, 625, 657
BmtI GCTAGC 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 229, 308, 736
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 364, 448
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 393
BseBI CCWGG 2 cut(s) 42, 310
BseDI CCNNGG 3 cut(s) 229, 308, 736
BseGI GGATG 7 cut(s) 209, 263, 298, 397, 469, 471, 717
BseLI CCNNNNNNNGG 3 cut(s) 88, 364, 448
BseNI ACTGG 1 cut(s) 393
BseSI GKGCMC 1 cut(s) 547
Bsh1236I CGCG 5 cut(s) 219, 410, 510, 584, 686
BshFI GGCC 2 cut(s) 136, 159
BsiHKAI GWGCWC 2 cut(s) 538, 547
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 365, 485
BsiWI CGTACG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 3 cut(s) 88, 364, 448
BsmAI GTCTC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 508
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 2 cut(s) 136, 159
Bso31I GGTCTC 1 cut(s) 564
BsoBI CYCGRG 1 cut(s) 153
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 538, 547
Bsp143I GATC 8 cut(s) 37, 185, 220, 258, 421, 549, 601, 657
Bsp68I TCGCGA 3 cut(s) 219, 510, 584
BspACI CCGC 3 cut(s) 69, 408, 684
BspANI GGCC 2 cut(s) 136, 159
BspFNI CGCG 5 cut(s) 219, 410, 510, 584, 686
BspLI GGNNCC 4 cut(s) 16, 187, 235, 524
BspOI GCTAGC 1 cut(s) 735
BspPI GGATC 4 cut(s) 32, 180, 193, 253
BspT104I TTCGAA 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 564
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 393
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 229, 308, 736
BssMI GATC 8 cut(s) 37, 185, 220, 258, 421, 549, 601, 657
BssSI CACGAG 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 736
Bst2BI CACGAG 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 42, 310
Bst4CI ACNGT 2 cut(s) 25, 54
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 4 cut(s) 161, 217, 366, 733
BstEII GGTNACC 1 cut(s) 679
BstF5I GGATG 7 cut(s) 209, 263, 298, 397, 469, 471, 717
BstFNI CGCG 5 cut(s) 219, 410, 510, 584, 686
BstKTI GATC 8 cut(s) 40, 188, 223, 261, 424, 552, 604, 660
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 8 cut(s) 37, 185, 220, 258, 421, 549, 601, 657
BstMWI GCNNNNNNNGC 3 cut(s) 165, 542, 622
BstNI CCWGG 2 cut(s) 42, 310
BstPI GGTNACC 1 cut(s) 679
BstSCI CCNGG 2 cut(s) 40, 308
BstSLI GKGCMC 1 cut(s) 547
BstUI CGCG 5 cut(s) 219, 410, 510, 584, 686
BstX2I RGATCY 2 cut(s) 185, 601
BstYI RGATCY 2 cut(s) 185, 601
BsuRI GGCC 2 cut(s) 136, 159
BtgZI GCGATG 3 cut(s) 149, 383, 599
BtsCI GGATG 7 cut(s) 209, 263, 298, 397, 469, 471, 717
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 3 cut(s) 50, 132, 545
BtuMI TCGCGA 3 cut(s) 219, 510, 584
Cac8I GCNNGC 4 cut(s) 161, 217, 366, 733
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 233, 522
CseI GACGC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 106
CviAII CATG 2 cut(s) 65, 540
CviJI RGCY 9 cut(s) 17, 136, 159, 364, 379, 496, 536, 700, 735
CviKI_1 RGCY 9 cut(s) 17, 136, 159, 364, 379, 496, 536, 700, 735
CviQI GTAC 1 cut(s) 106
DpnI GATC 8 cut(s) 39, 187, 222, 260, 423, 551, 603, 659
DpnII GATC 8 cut(s) 37, 185, 220, 258, 421, 549, 601, 657
Ecl136II GAGCTC 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 736
Eco147I AGGCCT 2 cut(s) 136, 159
Eco24I GRGCYC 1 cut(s) 538
Eco31I GGTCTC 1 cut(s) 564
Eco32I GATATC 1 cut(s) 690
Eco47I GGWCC 2 cut(s) 233, 522
Eco53kI GAGCTC 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 153
Eco91I GGTNACC 1 cut(s) 679
EcoICRI GAGCTC 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 522
EcoO65I GGTNACC 1 cut(s) 679
EcoRII CCWGG 2 cut(s) 40, 308
EcoRV GATATC 1 cut(s) 690
EcoT14I CCWWGG 1 cut(s) 736
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 736
FaeI CATG 2 cut(s) 68, 543
FaiI YATR 4 cut(s) 66, 196, 213, 541
FaqI GGGAC 1 cut(s) 508
FatI CATG 2 cut(s) 64, 539
FbaI TGATCA 1 cut(s) 549
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 7 cut(s) 216, 250, 305, 404, 458, 476, 704
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 132, 732
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 136, 159
HapII CCGG 2 cut(s) 365, 485
HgaI GACGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 68, 543
HinfI GANTC 1 cut(s) 741
HpaII CCGG 2 cut(s) 365, 485
HphI GGTGA 2 cut(s) 268, 673
Hpy166II GTNNAC 3 cut(s) 50, 241, 545
Hpy188I TCNGA 7 cut(s) 233, 268, 455, 533, 565, 621, 666
Hpy188III TCNNGA 6 cut(s) 35, 189, 201, 218, 509, 583
Hpy8I GTNNAC 3 cut(s) 50, 241, 545
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 6 cut(s) 82, 176, 367, 440, 507, 669
HpyCH4III ACNGT 2 cut(s) 25, 54
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 4 cut(s) 163, 545, 608, 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 542, 622
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 2 cut(s) 68, 543
KroI GCCGGC 1 cut(s) 364
KroNI GCCGGC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 8 cut(s) 37, 185, 220, 258, 421, 549, 601, 657
LmnI GCTCC 5 cut(s) 14, 250, 376, 541, 697
LweI GCATC 3 cut(s) 172, 625, 657
MaeI CTAG 2 cut(s) 132, 732
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 679
MalI GATC 8 cut(s) 39, 187, 222, 260, 423, 551, 603, 659
MboI GATC 8 cut(s) 37, 185, 220, 258, 421, 549, 601, 657
MboII GAAGA 4 cut(s) 287, 290, 652, 667
MflI RGATCY 2 cut(s) 185, 601
MhlI GDGCHC 2 cut(s) 538, 547
MluCI AATT 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 291, 433
MroNI GCCGGC 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 2 cut(s) 426, 711
MspI CCGG 2 cut(s) 365, 485
MspR9I CCNGG 2 cut(s) 42, 310
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 2 cut(s) 42, 310
MvnI CGCG 5 cut(s) 219, 410, 510, 584, 686
MwoI GCNNNNNNNGC 3 cut(s) 165, 542, 622
NaeI GCCGGC 1 cut(s) 366
NdeII GATC 8 cut(s) 37, 185, 220, 258, 421, 549, 601, 657
NgoMIV GCCGGC 1 cut(s) 364
NheI GCTAGC 1 cut(s) 731
NlaIII CATG 2 cut(s) 68, 543
NlaIV GGNNCC 4 cut(s) 16, 187, 235, 524
NmuCI GTSAC 1 cut(s) 679
NruI TCGCGA 3 cut(s) 219, 510, 584
NspV TTCGAA 1 cut(s) 353
PaeR7I CTCGAG 1 cut(s) 153
PceI AGGCCT 2 cut(s) 136, 159
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 249
PctI GAATGC 1 cut(s) 590
PdiI GCCGGC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 496
Pfl23II CGTACG 1 cut(s) 105
PkrI GCNGC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 40, 308
PspEI GGTNACC 1 cut(s) 679
PspGI CCWGG 2 cut(s) 40, 308
PspLI CGTACG 1 cut(s) 105
PspN4I GGNNCC 4 cut(s) 16, 187, 235, 524
PspPI GGNCC 2 cut(s) 233, 522
PspPPI RGGWCCY 1 cut(s) 522
PspXI VCTCGAGB 1 cut(s) 153
PsuI RGATCY 2 cut(s) 185, 601
RruI TCGCGA 3 cut(s) 219, 510, 584
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SacI GAGCTC 1 cut(s) 538
SaqAI TTAA 2 cut(s) 426, 711
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 8 cut(s) 37, 185, 220, 258, 421, 549, 601, 657
Sau96I GGNCC 2 cut(s) 233, 522
ScrFI CCNGG 2 cut(s) 42, 310
SduI GDGCHC 2 cut(s) 538, 547
SfaNI GCATC 3 cut(s) 172, 625, 657
Sfr274I CTCGAG 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 2 cut(s) 233, 522
SlaI CTCGAG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 153, 359
SmoI CTYRAG 2 cut(s) 153, 359
Sse9I AATT 1 cut(s) 349
SseBI AGGCCT 2 cut(s) 136, 159
SsiI CCGC 3 cut(s) 69, 408, 684
SspMI CTAG 2 cut(s) 132, 732
SstI GAGCTC 1 cut(s) 538
StuI AGGCCT 2 cut(s) 136, 159
StyD4I CCNGG 2 cut(s) 40, 308
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 2 cut(s) 25, 54
TaiI ACGT 1 cut(s) 483
TaqI TCGA 6 cut(s) 36, 117, 154, 252, 353, 444
TasI AATT 1 cut(s) 349
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 426, 711
Tru9I TTAA 2 cut(s) 426, 711
TscAI CASTG 3 cut(s) 57, 132, 552
TseFI GTSAC 1 cut(s) 679
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 4 cut(s) 103, 386, 583, 618
TspRI CASTG 3 cut(s) 57, 132, 552
VneI GTGCAC 1 cut(s) 543
VpaK11BI GGWCC 2 cut(s) 233, 522
XhoI CTCGAG 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 2 cut(s) 132, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.