AT4G08097

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004040
Physical Location & Seq
Forward (+)
5004096 .. 5005932
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08097.1

Sequence Viewer

Length: 1041 bp
ATGGAGTTTGAGGAACAGGTGGATCAGATGGTGGAAGCAAAACTTTGTAGTAGAACCTCGCATCATACAAGGTGGCGTATAAGCAGCCAGTGTGTGCGGTCTAACTTGGAAGTGAGGAAGTTCAGCAGGGCAGGACAAAGAGGAGGAGATGAGTATCTTTGCCGTTTCGGAAGTGGATCAAGGAGTATATGTGCAGTGGGTGACGTGACTGTAGTGCCTGGAGTGGTGGTGTTGATCAACACCATTGCTGCAGATGATTCCCATCAACTGCTTCGTCAGCTGCGTCTTGTGGTTGCTTGCTTCTTGCTCGATTTCGCTCCTTCAAACGTTGAATCATGGTCTGTTCCTGATGAGTGTCGATTGACACCAAGGTCGTGTTGGTCAACACTGAGACTTGGTGTTGAGTGGGTGGGCTTGGTGAGTAGAATAGCTGGAATGACTAGCATAGAACATATCTGGCGTGTTGTAGTCATCAAGTTGAATAGCACGAAGTGCAAGCCTAGTATGGTGGATATGACAGCCTTTAGAATGAACTATTGGGTGTTCAAGACAGACTCTGTTAATCCGAATTGGCTGGATTCCGAATTGGCAAAGTCAGCCTCGAAGGCTAGAAAAGAGGTTAAAGATCACGGAATGGAGCTGATCGAGGGGGCCATCCGCTTTATTCAAACTGAGAAGGCTCAATCGCAGCTCGAATCGGACATCAAGGAATCCAAGCTGAATGCCACTTTGAAAGACAAAAAAGAACGTCTTGCGGCTTTCCCTGCTTCACCCTTTGATCCTCAACTTTACGAAGAATTTTTCACCGAGTCACCCCCATTAGGTGAAACGGGACTTGATTGGGTTGCCGGGGTGCCTATCACACTGATCCCAACCATCAAATACAACTCTATCCAACCAAAGGTGCCTTTGATTGTGAACAACGATCCGGTGATGGTCTTGAATGATGAGAATGTTTTAGAAACCGCTCATGAACCTTCAGCCGAACAAAAGCTCATTAAAGATCCTTTCGTAGCTGAAAGAATTCGAGATGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.95

Weight (kDa)

5.96

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 370
AccB1I GGYRCC 2 cut(s) 853, 904
AccBSI CCGCTC 1 cut(s) 968
AciI CCGC 4 cut(s) 97, 658, 755, 966
AclI AACGTT 1 cut(s) 327
AclWI GGATC 6 cut(s) 30, 184, 773, 862, 920, 998
AcsI RAATTY 2 cut(s) 797, 1023
AcuI CTGAAG 1 cut(s) 963
AdeI CACNNNGTG 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 821, 901
AgsI TTSAA 7 cut(s) 324, 332, 481, 547, 668, 733, 943
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 520, 552
AluBI AGCT 7 cut(s) 280, 431, 640, 691, 718, 994, 1016
AluI AGCT 7 cut(s) 280, 431, 640, 691, 718, 994, 1016
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 6 cut(s) 30, 184, 773, 862, 920, 998
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 1 cut(s) 651
ApeKI GCWGC 4 cut(s) 84, 248, 280, 688
ApoI RAATTY 2 cut(s) 797, 1023
Asp700I GAANNNNTTC 1 cut(s) 1023
AspS9I GGNCC 1 cut(s) 651
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 7 cut(s) 212, 430, 762, 796, 804, 836, 943
BanI GGYRCC 2 cut(s) 853, 904
BbvI GCAGC 4 cut(s) 96, 235, 267, 700
BccI CCATC 6 cut(s) 22, 270, 662, 884, 928, 1025
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 3 cut(s) 441, 501, 609
BfmI CTRYAG 2 cut(s) 210, 249
BglI GCCNNNNNGGC 1 cut(s) 605
BisI GCNGC 5 cut(s) 85, 249, 281, 689, 756
BlsI GCNGC 5 cut(s) 86, 250, 282, 690, 757
Bme1390I CCNGG 2 cut(s) 219, 850
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 651
BmiI GGNNCC 3 cut(s) 652, 855, 906
BmrFI CCNGG 2 cut(s) 219, 850
BmsI GCATC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 850
BsaBI GATNNNNATC 2 cut(s) 153, 261
BsaJI CCNNGG 2 cut(s) 368, 849
BsaWI WCCGGW 1 cut(s) 928
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 213, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 821, 901
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 2 cut(s) 153, 261
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 368, 849
BseGI GGATG 1 cut(s) 654
BseJI GATNNNNATC 2 cut(s) 153, 261
BseLI CCNNNNNNNGG 2 cut(s) 821, 901
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 380, 663
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 156, 159
BseXI GCAGC 4 cut(s) 96, 235, 267, 700
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 1 cut(s) 653
BshNI GGYRCC 2 cut(s) 853, 904
BsiSI CCGG 2 cut(s) 849, 929
BslFI GGGAC 1 cut(s) 846
BslI CCNNNNNNNGG 2 cut(s) 821, 901
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 846
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 1 cut(s) 653
Bsp143I GATC 9 cut(s) 22, 176, 234, 625, 642, 778, 867, 925, 1003
BspACI CCGC 4 cut(s) 97, 658, 755, 966
BspANI GGCC 1 cut(s) 653
BspCNI CTCAG 2 cut(s) 381, 664
BspHI TCATGA 1 cut(s) 970
BspLI GGNNCC 3 cut(s) 652, 855, 906
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 6 cut(s) 30, 184, 773, 862, 920, 998
BspT107I GGYRCC 2 cut(s) 853, 904
BsrBI CCGCTC 1 cut(s) 968
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 368, 849
BssMI GATC 9 cut(s) 22, 176, 234, 625, 642, 778, 867, 925, 1003
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 298, 497
BstDEI CTNAG 2 cut(s) 389, 672
BstF5I GGATG 1 cut(s) 654
BstKTI GATC 9 cut(s) 25, 179, 237, 628, 645, 781, 870, 928, 1006
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 9 cut(s) 22, 176, 234, 625, 642, 778, 867, 925, 1003
BstMWI GCNNNNNNNGC 5 cut(s) 277, 492, 596, 605, 764
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 2 cut(s) 217, 848
BstSFI CTRYAG 2 cut(s) 210, 249
BstV1I GCAGC 4 cut(s) 96, 235, 267, 700
BstX2I RGATCY 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 1003
BsuRI GGCC 1 cut(s) 653
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 654
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 4 cut(s) 95, 201, 386, 863
Cac8I GCNNGC 2 cut(s) 298, 497
CaiI CAGNNNCTG 1 cut(s) 557
CciI TCATGA 1 cut(s) 970
Cfr13I GGNCC 1 cut(s) 651
CseI GACGC 1 cut(s) 272
CviAII CATG 2 cut(s) 336, 971
DdeI CTNAG 2 cut(s) 389, 672
DpnI GATC 9 cut(s) 24, 178, 236, 627, 644, 780, 869, 927, 1005
DpnII GATC 9 cut(s) 22, 176, 234, 625, 642, 778, 867, 925, 1003
DraIII CACNNNGTG 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 963
EcoRI GAATTC 1 cut(s) 1023
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 2 cut(s) 339, 974
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 735, 767
FaqI GGGAC 1 cut(s) 846
FatI CATG 2 cut(s) 335, 970
FbaI TGATCA 1 cut(s) 234
Fnu4HI GCNGC 5 cut(s) 85, 249, 281, 689, 756
FokI GGATG 1 cut(s) 641
Fsp4HI GCNGC 5 cut(s) 85, 249, 281, 689, 756
FspBI CTAG 3 cut(s) 441, 501, 609
GluI GCNGC 5 cut(s) 85, 249, 281, 689, 756
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 653
HapII CCGG 2 cut(s) 849, 929
HgaI GACGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 339, 974
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 7 cut(s) 257, 332, 554, 578, 695, 710, 809
HpaII CCGG 2 cut(s) 849, 929
HphI GGTGA 7 cut(s) 212, 430, 762, 796, 804, 836, 943
Hpy166II GTNNAC 2 cut(s) 384, 919
Hpy188I TCNGA 5 cut(s) 27, 170, 567, 583, 700
Hpy188III TCNNGA 5 cut(s) 347, 547, 940, 971, 1028
Hpy8I GTNNAC 2 cut(s) 384, 919
HpyAV CCTTC 4 cut(s) 330, 598, 670, 987
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 3 cut(s) 204, 327, 748
HpyCH4V TGCA 3 cut(s) 194, 251, 495
HpyF10VI GCNNNNNNNGC 5 cut(s) 277, 492, 596, 605, 764
HpyF3I CTNAG 2 cut(s) 389, 672
HpySE526I ACGT 3 cut(s) 204, 327, 748
Hsp92II CATG 2 cut(s) 339, 974
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 9 cut(s) 22, 176, 234, 625, 642, 778, 867, 925, 1003
LmnI GCTCC 2 cut(s) 322, 637
Lsp1109I GCAGC 4 cut(s) 96, 235, 267, 700
LweI GCATC 1 cut(s) 70
MaeI CTAG 3 cut(s) 441, 501, 609
MaeII ACGT 3 cut(s) 204, 327, 748
MaeIII GTNAC 3 cut(s) 200, 205, 810
MalI GATC 9 cut(s) 24, 178, 236, 627, 644, 780, 869, 927, 1005
MbiI CCGCTC 1 cut(s) 968
MboI GATC 9 cut(s) 22, 176, 234, 625, 642, 778, 867, 925, 1003
MboII GAAGA 1 cut(s) 806
MflI RGATCY 1 cut(s) 1003
MluCI AATT 4 cut(s) 568, 584, 797, 1023
MlyI GAGTC 2 cut(s) 548, 818
MmeI TCCRAC 1 cut(s) 919
MnlI CCTC 9 cut(s) 4, 67, 108, 134, 137, 610, 610, 640, 792
MroXI GAANNNNTTC 1 cut(s) 1023
MseI TTAA 3 cut(s) 561, 621, 999
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 2 cut(s) 849, 929
MspR9I CCNGG 2 cut(s) 219, 850
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 5 cut(s) 277, 492, 596, 605, 764
NciI CCSGG 1 cut(s) 850
NdeII GATC 9 cut(s) 22, 176, 234, 625, 642, 778, 867, 925, 1003
NlaIII CATG 2 cut(s) 339, 974
NlaIV GGNNCC 3 cut(s) 652, 855, 906
NmuCI GTSAC 3 cut(s) 200, 205, 810
PagI TCATGA 1 cut(s) 970
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PctI GAATGC 1 cut(s) 727
PdmI GAANNNNTTC 1 cut(s) 1023
PfeI GAWTC 5 cut(s) 257, 332, 578, 695, 710
PkrI GCNGC 5 cut(s) 86, 250, 282, 690, 757
PleI GAGTC 2 cut(s) 548, 817
PpsI GAGTC 2 cut(s) 548, 817
Psp1406I AACGTT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 3 cut(s) 652, 855, 906
PspPI GGNCC 1 cut(s) 651
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 1 cut(s) 1003
PvuII CAGCTG 1 cut(s) 280
SaqAI TTAA 3 cut(s) 561, 621, 999
SatI GCNGC 5 cut(s) 85, 249, 281, 689, 756
Sau3AI GATC 9 cut(s) 22, 176, 234, 625, 642, 778, 867, 925, 1003
Sau96I GGNCC 1 cut(s) 651
SchI GAGTC 2 cut(s) 548, 818
ScrFI CCNGG 2 cut(s) 219, 850
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 2 cut(s) 210, 249
Sse9I AATT 4 cut(s) 568, 584, 797, 1023
SsiI CCGC 4 cut(s) 97, 658, 755, 966
SspMI CTAG 3 cut(s) 441, 501, 609
StyD4I CCNGG 2 cut(s) 217, 848
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 3 cut(s) 207, 330, 751
TaqI TCGA 6 cut(s) 309, 358, 602, 645, 693, 1027
TasI AATT 4 cut(s) 568, 584, 797, 1023
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 5 cut(s) 257, 332, 578, 695, 710
Tru1I TTAA 3 cut(s) 561, 621, 999
Tru9I TTAA 3 cut(s) 561, 621, 999
TscAI CASTG 4 cut(s) 95, 201, 393, 870
TseFI GTSAC 3 cut(s) 200, 205, 810
TseI GCWGC 4 cut(s) 84, 248, 280, 688
Tsp45I GTSAC 3 cut(s) 200, 205, 810
TspDTI ATGAA 2 cut(s) 545, 987
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 4 cut(s) 95, 201, 393, 870
XapI RAATTY 2 cut(s) 797, 1023
XcmI CCANNNNNNNNNTGG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 1023
XspI CTAG 3 cut(s) 441, 501, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.