AT4G06583

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004040
Physical Location & Seq
Forward (+)
3576112 .. 3576681
570 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G06583.2

Sequence Viewer

Length: 249 bp
ATGGAAAACGAAGGAGCCTCCACCGTCTGCCCCCTCGATCCCGGAAGTCCATTGTTTCTGTCCAGCGACGGCTTCGAGCCCGCCTGTGTTCTCTTTCCTCACGCCTGCTTCCACTTCCCCTCGAAAGACAAAAAGGAGGCGTATGACTTTATGGATAAGGCAAACACTCGAGGCCCGAATTGCCCGTATCGAGAGGAAGGTAAGGGCAATGGAGAGCGACCCTTTTTAATGGGAGTAGAGGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.06

Weight (kDa)

4.72

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3287 PF11690 3 - 94 8.9e-37 Protein of unknown function (DUF3287)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 32
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 168
BanII GRGCYC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 85
BcnI CCSGG 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 42
BpuMI CCSGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 214
BshFI GGCC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 42
BsnI GGCC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 214
BssMI GATC 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 81, 106
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 40
BsuRI GGCC 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 81, 106
Cfr13I GGNCC 1 cut(s) 173
CviJI RGCY 4 cut(s) 17, 72, 79, 174
CviKI_1 RGCY 4 cut(s) 17, 72, 79, 174
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 81
FaiI YATR 2 cut(s) 144, 152
FauI CCCGC 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 42
HpaII CCGG 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 5, 191
HpyCH4III ACNGT 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 4 cut(s) 55, 76, 97, 118
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 178
MnlI CCTC 8 cut(s) 28, 44, 108, 130, 130, 164, 187, 232
MseI TTAA 1 cut(s) 227
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 42
NdeII GATC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 16
PaeR7I CTCGAG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 168
SaqAI TTAA 1 cut(s) 227
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 81
SetI ASST 1 cut(s) 202
Sfr274I CTCGAG 1 cut(s) 168
SlaI CTCGAG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 1 cut(s) 178
SsiI CCGC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 5 cut(s) 36, 75, 122, 169, 190
TasI AATT 1 cut(s) 178
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
XhoI CTCGAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.