AT5G35603

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004040
Physical Location & Seq
Reverse (-)
13785168 .. 13786329
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35603.3

Sequence Viewer

Length: 354 bp
ATGGAAAACGAAGGCGCATCCACCGTTTGCCCTCTCGACCCAAGCAGTCTGCTGTTCTTGTCCGGCGATGGTTTCGAACCGGCCGGCGTCTTCTTTCCACATGCCGCATTCTACTTCCCTCCGAAAGACAAGAAGGAGGCGTATGACTTCATGGACAAGGTTGTCGACAAACATCACCGTATGTGCGATGAGAGGCAACGCTTGGGTCTCAAAAGGCACACACTCGAGGCTCATATCGCTCGAGTGGAGAGGAAGGTGAGGGCTTTGGAAAGCGATCCCTTTCAATGGGAGTGCAGGAACTTCGACTCTGTCGCAAAGATCCCGACTATGCTCCGGATGTACCTCTGCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.54

Weight (kDa)

6.51

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3287 PF11690 3 - 61 5.5e-13 Protein of unknown function (DUF3287)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 333
AciI CCGC 1 cut(s) 105
AclWI GGATC 2 cut(s) 269, 313
AcoI YGGCCR 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 269, 313
Ama87I CYCGRG 2 cut(s) 224, 240
Aor13HI TCCGGA 1 cut(s) 333
AoxI GGCC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 17, 350
AsuHPI GGTGA 2 cut(s) 167, 268
AsuII TTCGAA 1 cut(s) 75
AvaI CYCGRG 2 cut(s) 224, 240
BbsI GAAGAC 1 cut(s) 82
BccI CCATC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BcoDI GTCTC 1 cut(s) 212
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmeT110I CYCGRG 2 cut(s) 224, 240
BmsI GCATC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse118I RCCGGY 2 cut(s) 79, 83
BseAI TCCGGA 1 cut(s) 333
BseGI GGATG 2 cut(s) 17, 342
BseLI CCNNNNNNNGG 1 cut(s) 285
BseX3I CGGCCG 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 313
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 84
BsiHKCI CYCGRG 2 cut(s) 224, 240
BsiSI CCGG 4 cut(s) 63, 80, 84, 334
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 2 cut(s) 224, 240
Bsp119I TTCGAA 1 cut(s) 75
Bsp13I TCCGGA 1 cut(s) 333
Bsp143I GATC 2 cut(s) 274, 318
BspACI CCGC 1 cut(s) 105
BspANI GGCC 1 cut(s) 83
BspEI TCCGGA 1 cut(s) 333
BspPI GGATC 2 cut(s) 269, 313
BspT104I TTCGAA 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 2 cut(s) 79, 83
BssAI RCCGGY 2 cut(s) 79, 83
BssMI GATC 2 cut(s) 274, 318
BssNI GRCGYC 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 25, 179
BstACI GRCGYC 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 85
BstF5I GGATG 2 cut(s) 17, 342
BstHHI GCGC 2 cut(s) 17, 350
BstKTI GATC 2 cut(s) 277, 321
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 274, 318
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BstZI CGGCCG 1 cut(s) 81
BsuRI GGCC 1 cut(s) 83
BtgZI GCGATG 2 cut(s) 81, 201
BtsCI GGATG 2 cut(s) 17, 342
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 2 cut(s) 17, 350
Cfr10I RCCGGY 2 cut(s) 79, 83
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 101, 151
CviJI RGCY 3 cut(s) 83, 230, 263
CviKI_1 RGCY 3 cut(s) 83, 230, 263
CviQI GTAC 1 cut(s) 340
DpnI GATC 2 cut(s) 276, 320
DpnII GATC 2 cut(s) 274, 318
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 81
EagI CGGCCG 1 cut(s) 81
EclXI CGGCCG 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 212
Eco52I CGGCCG 1 cut(s) 81
Eco88I CYCGRG 2 cut(s) 224, 240
FaeI CATG 2 cut(s) 104, 154
FaiI YATR 6 cut(s) 102, 144, 152, 182, 234, 329
FatI CATG 2 cut(s) 100, 150
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 2 cut(s) 4, 349
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 2 cut(s) 16, 349
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 83
HapII CCGG 4 cut(s) 63, 80, 84, 334
HgaI GACGC 1 cut(s) 76
HhaI GCGC 2 cut(s) 17, 350
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 104, 154
Hin6I GCGC 2 cut(s) 15, 348
HinP1I GCGC 2 cut(s) 15, 348
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 305
HpaII CCGG 4 cut(s) 63, 80, 84, 334
HphI GGTGA 2 cut(s) 167, 268
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 35, 322, 334
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 5, 127, 247
HpyCH4III ACNGT 2 cut(s) 25, 179
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 104, 154
HspAI GCGC 2 cut(s) 15, 348
Kpn2I TCCGGA 1 cut(s) 333
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 274, 318
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 5 cut(s) 76, 93, 97, 280, 347
LweI GCATC 1 cut(s) 26
MalI GATC 2 cut(s) 276, 320
MboI GATC 2 cut(s) 274, 318
MboII GAAGA 1 cut(s) 82
MflI RGATCY 1 cut(s) 318
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 8 cut(s) 42, 129, 130, 186, 220, 243, 252, 353
MroI TCCGGA 1 cut(s) 333
MroNI GCCGGC 1 cut(s) 83
MspI CCGG 4 cut(s) 63, 80, 84, 334
Mva1269I GAATGC 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 236
NaeI GCCGGC 1 cut(s) 85
NdeII GATC 2 cut(s) 274, 318
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 2 cut(s) 104, 154
NspI RCATGY 1 cut(s) 104
NspV TTCGAA 1 cut(s) 75
PaeR7I CTCGAG 2 cut(s) 224, 240
PctI GAATGC 1 cut(s) 107
PdiI GCCGGC 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PspXI VCTCGAGB 2 cut(s) 224, 240
PsuI RGATCY 1 cut(s) 318
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SalI GTCGAC 1 cut(s) 164
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 274, 318
SchI GAGTC 1 cut(s) 299
SetI ASST 3 cut(s) 162, 258, 345
SfaNI GCATC 1 cut(s) 26
Sfr274I CTCGAG 2 cut(s) 224, 240
SfuI TTCGAA 1 cut(s) 75
SlaI CTCGAG 2 cut(s) 224, 240
SmlI CTYRAG 2 cut(s) 224, 240
SmoI CTYRAG 2 cut(s) 224, 240
SsiI CCGC 1 cut(s) 105
TaaI ACNGT 2 cut(s) 25, 179
TaqI TCGA 6 cut(s) 36, 75, 165, 225, 241, 303
TauI GCSGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 308
XceI RCATGY 1 cut(s) 104
XhoI CTCGAG 2 cut(s) 224, 240
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.