AT5G29050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004040
Physical Location & Seq
Forward (+)
11111692 .. 11112283
592 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G29050.1

Sequence Viewer

Length: 489 bp
ATGCAGGGCTTACTGGAAGGCGTGAGTCTTTCTGCGAATCACTCCACATTGGAGTTTAACCTTCGATGCTCGGAGTTCATGCCAGACTTTTCTAGGGTCGGAATGATGGATGAAGATATCCCAAATGTGCCAGGAAGTGGGCCTTCACCACCTCGCAGCTTCTTCAGGTCCCAAATCCGAGGTCCATGTGCACTGATCAAGGGACTTTTGGACAGAGACCAAGAAATCGCGATGGCATTCATCAAAGCTCTTACGGTTCAGCATCAGAAGCGTTCGTTGGAAAAGAGGAAGCTCCGAAAAAAGATTAACCGAATGTTACGTATAGTCACCGTAATATCAAGGGAACTTCACAACCTCAACTCTCATCTCGGGGATTGGATCGAACTTGGAATCTCCGAATTCGCTCGCATCCCGGATTGTATGATGCCGATCATCTATCTTGCTGGCCAAGGAGTCCAAGTGTTTTGTACGTCGAGAAGGGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.34

Weight (kDa)

9.5

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3287 PF11690 39 - 152 7.2e-39 Protein of unknown function (DUF3287)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AccII CGCG 1 cut(s) 230
AclWI GGATC 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 148
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 1 cut(s) 137
AjnI CCWGG 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 159, 248, 292
AluI AGCT 3 cut(s) 159, 248, 292
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 210
Alw44I GTGCAC 1 cut(s) 189
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 2 cut(s) 140, 445
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
Asp700I GAANNNNTTC 1 cut(s) 481
AspS9I GGNCC 3 cut(s) 140, 168, 182
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 138, 319
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 2 cut(s) 168, 182
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 168
BccI CCATC 2 cut(s) 100, 226
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 195
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 132, 413
Bme18I GGWCC 2 cut(s) 168, 182
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 3 cut(s) 140, 168, 182
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 2 cut(s) 132, 413
BmsI GCATC 4 cut(s) 56, 271, 414, 417
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 178, 448
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 428
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 178, 448
BseGI GGATG 2 cut(s) 115, 408
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 2 cut(s) 142, 447
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 154, 216
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 2 cut(s) 154, 216
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 2 cut(s) 142, 447
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 3 cut(s) 195, 378, 429
Bsp68I TCGCGA 1 cut(s) 230
BspANI GGCC 2 cut(s) 142, 447
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 170
BspPI GGATC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 178, 448
BssMI GATC 3 cut(s) 195, 378, 429
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 256, 331
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 406, 445
BstF5I GGATG 2 cut(s) 115, 408
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 3 cut(s) 198, 381, 432
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 3 cut(s) 195, 378, 429
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 130, 411
BstSLI GKGCMC 1 cut(s) 193
BstSNI TACGTA 1 cut(s) 320
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 168
BsuRI GGCC 2 cut(s) 142, 447
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 115, 408
BtsIMutI CAGTG 1 cut(s) 191
BtuMI TCGCGA 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 406, 445
Cfr13I GGNCC 3 cut(s) 140, 168, 182
Csp6I GTAC 1 cut(s) 468
CviAII CATG 2 cut(s) 79, 186
CviJI RGCY 6 cut(s) 9, 142, 159, 248, 292, 447
CviKI_1 RGCY 6 cut(s) 9, 142, 159, 248, 292, 447
CviQI GTAC 1 cut(s) 468
DpnI GATC 3 cut(s) 197, 380, 431
DpnII GATC 3 cut(s) 195, 378, 429
EaeI YGGCCR 1 cut(s) 445
Eco105I TACGTA 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 168, 182
Eco57I CTGAAG 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 168
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 2 cut(s) 82, 189
FaiI YATR 4 cut(s) 80, 187, 323, 422
FalI AAGNNNNNCTT 3 cut(s) 127, 159, 469
FaqI GGGAC 2 cut(s) 154, 216
FatI CATG 2 cut(s) 78, 185
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 2 cut(s) 122, 395
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 2 cut(s) 142, 447
HapII CCGG 1 cut(s) 413
Hin1II CATG 2 cut(s) 82, 189
HinfI GANTC 4 cut(s) 25, 37, 390, 453
HpaII CCGG 1 cut(s) 413
HphI GGTGA 2 cut(s) 138, 319
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 6 cut(s) 73, 101, 179, 267, 296, 397
Hpy188III TCNNGA 2 cut(s) 229, 474
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 475
HpyAV CCTTC 4 cut(s) 11, 71, 153, 471
HpyCH4III ACNGT 2 cut(s) 256, 331
HpyCH4IV ACGT 2 cut(s) 319, 470
HpyCH4V TGCA 2 cut(s) 4, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpySE526I ACGT 2 cut(s) 319, 470
Hsp92II CATG 2 cut(s) 82, 189
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 3 cut(s) 195, 378, 429
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 6 cut(s) 96, 117, 144, 151, 426, 429
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 4 cut(s) 56, 271, 414, 417
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 319, 470
MaeIII GTNAC 2 cut(s) 315, 325
MalI GATC 3 cut(s) 197, 380, 431
MboI GATC 3 cut(s) 195, 378, 429
MboII GAAGA 2 cut(s) 125, 154
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 447
MluCI AATT 1 cut(s) 398
MluNI TGGCCA 1 cut(s) 447
MlyI GAGTC 2 cut(s) 34, 462
MmeI TCCRAC 2 cut(s) 79, 258
MnlI CCTC 4 cut(s) 162, 173, 279, 365
Mox20I TGGCCA 1 cut(s) 447
MroXI GAANNNNTTC 1 cut(s) 481
MscI TGGCCA 1 cut(s) 447
MseI TTAA 3 cut(s) 57, 306, 487
Msp20I TGGCCA 1 cut(s) 447
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 2 cut(s) 132, 413
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 268
NciI CCSGG 1 cut(s) 413
NdeII GATC 3 cut(s) 195, 378, 429
NlaIII CATG 2 cut(s) 82, 189
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 325
NruI TCGCGA 1 cut(s) 230
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 37, 390
PflMI CCANNNNNTGG 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 1 cut(s) 158
PleI GAGTC 2 cut(s) 33, 461
PpsI GAGTC 2 cut(s) 33, 461
Ppu21I YACGTR 1 cut(s) 320
PpuMI RGGWCCY 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 3 cut(s) 140, 168, 182
PspPPI RGGWCCY 1 cut(s) 168
RruI TCGCGA 1 cut(s) 230
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SaqAI TTAA 3 cut(s) 57, 306, 487
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 3 cut(s) 195, 378, 429
Sau96I GGNCC 3 cut(s) 140, 168, 182
SchI GAGTC 2 cut(s) 34, 462
ScrFI CCNGG 2 cut(s) 132, 413
SduI GDGCHC 1 cut(s) 193
SfaNI GCATC 4 cut(s) 56, 271, 414, 417
SinI GGWCC 2 cut(s) 168, 182
SnaBI TACGTA 1 cut(s) 320
Sse9I AATT 1 cut(s) 398
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 130, 411
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 2 cut(s) 256, 331
TaiI ACGT 2 cut(s) 322, 473
TaqI TCGA 3 cut(s) 64, 381, 473
TasI AATT 1 cut(s) 398
TfiI GAWTC 2 cut(s) 37, 390
Tru1I TTAA 3 cut(s) 57, 306, 487
Tru9I TTAA 3 cut(s) 57, 306, 487
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 3 cut(s) 67, 126, 229
TspRI CASTG 1 cut(s) 198
Van91I CCANNNNNTGG 1 cut(s) 137
VneI GTGCAC 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 168, 182
XapI RAATTY 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 481
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.