Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Forward (+)

17931390 .. 17934662

Gene Structure 3273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGAGAGATTTTCTCGGGCTGGGATCAAAGTTATCTCCGATAACTGTGAAGGAGGAAACTAACGAAGATTCAGCCCCAAGTAGAGGTATGATGGATTGGTCATTCTCAAGCAAAGTCGGTTCTGGTCCTCAGTTTCTTTCTTTTGGGACATCCCAACAAGAAACGCGTGTAAACACAGTCAATGATCATTTGCTTTCTTCTGCTGCAATGGATCAAAACCAGAGAACTTACTTCAGCTCACTACAGGAAGACAGAGTGTTCCCAGGTTCCAGTCAGCAAGACCAAACAACCATCACAGTCTCCATGTCCGAACCAAACTACATCAACAGTTTCATAAACCACCAACATTTAGGAGGATCTCCTATCATGGCACCTCCAGTTTCAGTATTTCCTGCTCCAACCACTATTAGATCTTCTTCAAAACCACTTCCCCCTCAGTTGACAATCTTTTATGCCGGTTCAGTATTAGTTTACCAAGACATAGCTCCTGAAAAGGCCCAAGCTATCATGTTGCTAGCCGGAAATGGACCTCATGCTAAACCGGTTTCACAACCTAAACCTCAAAAACTGGTTCATCACTCTCTTCCAACCACTGATCCTCCAACTATGCCTCCTAGTTTCCTGCCTTCCATCTCTTACATTGTCTCTGAAACCAGAAGTAGTGGATCCAACGGGGTTACTGGACTTGGACCAACAAAAACAAAGGCGAGTTTAGCATCCACGCGCAACAACCAAACTGCTGCCTTCTCTATGGCTCCAACAGTGGGTTTACCACAAACACGCAAAGCATCCTTGGCTCGGTTCTTAGAGAAACGCAAAGAAAGGGTCATTAACGTATCACCTTATTACGTAGACAACAAGTCATCAATAGACTGTAGAACACTGATGTCTGAATGTGTAAGCTGTCCTCCAGCTCATCATCTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

310

Amino Acids

33.63

Weight (kDa)

8.93

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	143 - 175	3.8e-15	tify domain
Jas_motif	PF09425	259 - 276	6e-09	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	855
AccII	CGCG	2 cut(s)	169, 727
AclWI	GGATC	6 cut(s)	34, 222, 367, 593, 663, 676
AcuI	CTGAAG	1 cut(s)	220
AfiI	CCNNNNNNNGG	3 cut(s)	86, 767, 801
AflIII	ACRYGT	1 cut(s)	167
AgeI	ACCGGT	1 cut(s)	544
AgsI	TTSAA	1 cut(s)	423
AhdI	GACNNNNNGTC	1 cut(s)	862
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	5 cut(s)	240, 488, 506, 906, 917
AluI	AGCT	5 cut(s)	240, 488, 506, 906, 917
Alw26I	GTCTC	2 cut(s)	307, 652
AlwI	GGATC	6 cut(s)	34, 222, 367, 593, 663, 676
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	498
ApeKI	GCWGC	2 cut(s)	206, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	813, 845
AsiGI	ACCGGT	1 cut(s)	544
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	4 cut(s)	128, 499, 530, 692
AsuHPI	GGTGA	1 cut(s)	834
AsuNHI	GCTAGC	1 cut(s)	517
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	128, 530, 692
BamHI	GGATCC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	193, 730
BccI	CCATC	3 cut(s)	88, 302, 641
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	307, 652
BfaI	CTAG	2 cut(s)	518, 618
BfmI	CTRYAG	2 cut(s)	245, 877
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	2 cut(s)	207, 744
BlsI	GCNGC	2 cut(s)	208, 745
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	3 cut(s)	128, 530, 692
BmeRI	GACNNNNNGTC	1 cut(s)	862
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	4 cut(s)	128, 499, 530, 692
BmiI	GGNNCC	4 cut(s)	271, 375, 670, 759
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	2 cut(s)	728, 800
BmtI	GCTAGC	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	363, 897
BpuEI	CTTGAG	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	853
BsaJI	CCNNGG	2 cut(s)	265, 795
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	4 cut(s)	586, 598, 616, 628
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 767, 801
Bse118I	RCCGGY	2 cut(s)	458, 544
Bse1I	ACTGG	4 cut(s)	273, 380, 576, 688
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	265, 795
BseGI	GGATG	3 cut(s)	152, 719, 791
BseLI	CCNNNNNNNGG	3 cut(s)	86, 767, 801
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	146, 452
BseNI	ACTGG	4 cut(s)	273, 380, 576, 688
BseXI	GCAGC	2 cut(s)	193, 730
BseYI	CCCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	911
Bsh1236I	CGCG	2 cut(s)	169, 727
BshFI	GGCC	1 cut(s)	500
BshNI	GGYRCC	1 cut(s)	373
BshTI	ACCGGT	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	459, 522, 545
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	3 cut(s)	86, 767, 801
BsmAI	GTCTC	2 cut(s)	307, 652
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	17
Bsp143I	GATC	7 cut(s)	26, 187, 214, 359, 413, 598, 668
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	2 cut(s)	145, 451
BspFNI	CGCG	2 cut(s)	169, 727
BspLI	GGNNCC	4 cut(s)	271, 375, 670, 759
BspOI	GCTAGC	1 cut(s)	521
BspPI	GGATC	6 cut(s)	34, 222, 367, 593, 663, 676
BspT107I	GGYRCC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	2 cut(s)	458, 544
BsrI	ACTGG	4 cut(s)	273, 380, 576, 688
BssAI	RCCGGY	2 cut(s)	458, 544
BssECI	CCNNGG	2 cut(s)	265, 795
BssMI	GATC	7 cut(s)	26, 187, 214, 359, 413, 598, 668
BssT1I	CCWWGG	1 cut(s)	795
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	6 cut(s)	49, 181, 301, 332, 766, 878
Bst6I	CTCTTC	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	853
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	3 cut(s)	132, 438, 808
BstF5I	GGATG	3 cut(s)	152, 719, 791
BstFNI	CGCG	2 cut(s)	169, 727
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	7 cut(s)	29, 190, 217, 362, 416, 601, 671
BstMAI	GTCTC	2 cut(s)	307, 652
BstMBI	GATC	7 cut(s)	26, 187, 214, 359, 413, 598, 668
BstMWI	GCNNNNNNNGC	2 cut(s)	716, 797
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	2 cut(s)	245, 877
BstSNI	TACGTA	1 cut(s)	853
BstUI	CGCG	2 cut(s)	169, 727
BstV1I	GCAGC	2 cut(s)	193, 730
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	3 cut(s)	359, 413, 668
BstYI	RGATCY	3 cut(s)	359, 413, 668
BsuRI	GGCC	1 cut(s)	500
BtsCI	GGATG	3 cut(s)	152, 719, 791
BtsIMutI	CAGTG	3 cut(s)	594, 771, 884
Cac8I	GCNNGC	1 cut(s)	519
CfoI	GCGC	1 cut(s)	729
Cfr10I	RCCGGY	2 cut(s)	458, 544
Cfr13I	GGNCC	4 cut(s)	128, 499, 530, 692
CspAI	ACCGGT	1 cut(s)	544
CviAII	CATG	4 cut(s)	307, 370, 511, 536
DdeI	CTNAG	3 cut(s)	132, 438, 808
DpnI	GATC	7 cut(s)	28, 189, 216, 361, 415, 600, 670
DpnII	GATC	7 cut(s)	26, 187, 214, 359, 413, 598, 668
DriI	GACNNNNNGTC	1 cut(s)	862
Eam1104I	CTCTTC	1 cut(s)	591
Eam1105I	GACNNNNNGTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	591
Eco105I	TACGTA	1 cut(s)	853
Eco130I	CCWWGG	1 cut(s)	795
Eco47I	GGWCC	3 cut(s)	128, 530, 692
Eco57I	CTGAAG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	795
FaeI	CATG	4 cut(s)	310, 373, 514, 539
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	4 cut(s)	306, 369, 510, 535
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	2 cut(s)	207, 744
FokI	GGATG	3 cut(s)	139, 706, 778
Fsp4HI	GCNGC	2 cut(s)	207, 744
FspBI	CTAG	2 cut(s)	518, 618
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	2 cut(s)	207, 744
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	2 cut(s)	363, 897
HaeIII	GGCC	1 cut(s)	500
HapII	CCGG	3 cut(s)	459, 522, 545
HhaI	GCGC	1 cut(s)	729
Hin1II	CATG	4 cut(s)	310, 373, 514, 539
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	3 cut(s)	459, 522, 545
HphI	GGTGA	1 cut(s)	834
Hpy166II	GTNNAC	5 cut(s)	175, 444, 475, 773, 856
Hpy188I	TCNGA	4 cut(s)	42, 313, 652, 895
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	5 cut(s)	175, 444, 475, 773, 856
HpyAV	CCTTC	3 cut(s)	46, 639, 757
HpyCH4III	ACNGT	6 cut(s)	49, 181, 301, 332, 766, 878
HpyCH4IV	ACGT	2 cut(s)	837, 852
HpyCH4V	TGCA	2 cut(s)	209, 928
HpyF10VI	GCNNNNNNNGC	2 cut(s)	716, 797
HpyF3I	CTNAG	3 cut(s)	132, 438, 808
HpySE526I	ACGT	2 cut(s)	837, 852
Hsp92II	CATG	4 cut(s)	310, 373, 514, 539
HspAI	GCGC	1 cut(s)	727
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	7 cut(s)	26, 187, 214, 359, 413, 598, 668
LmnI	GCTCC	3 cut(s)	403, 493, 763
Lsp1109I	GCAGC	2 cut(s)	193, 730
LweI	GCATC	2 cut(s)	728, 800
MaeI	CTAG	2 cut(s)	518, 618
MaeII	ACGT	2 cut(s)	837, 852
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	7 cut(s)	28, 189, 216, 361, 415, 600, 670
MboI	GATC	7 cut(s)	26, 187, 214, 359, 413, 598, 668
MboII	GAAGA	6 cut(s)	80, 192, 263, 408, 411, 578
MflI	RGATCY	3 cut(s)	359, 413, 668
MluI	ACGCGT	1 cut(s)	167
MmeI	TCCRAC	5 cut(s)	425, 614, 629, 696, 785
MseI	TTAA	1 cut(s)	834
MspI	CCGG	3 cut(s)	459, 522, 545
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	2 cut(s)	169, 727
MwoI	GCNNNNNNNGC	2 cut(s)	716, 797
NdeII	GATC	7 cut(s)	26, 187, 214, 359, 413, 598, 668
NheI	GCTAGC	1 cut(s)	517
NlaIII	CATG	4 cut(s)	310, 373, 514, 539
NlaIV	GGNNCC	4 cut(s)	271, 375, 670, 759
PfeI	GAWTC	1 cut(s)	71
PinAI	ACCGGT	1 cut(s)	544
PkrI	GCNGC	2 cut(s)	208, 745
Ppu21I	YACGTR	1 cut(s)	853
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	4 cut(s)	271, 375, 670, 759
PspPI	GGNCC	4 cut(s)	128, 499, 530, 692
PsuI	RGATCY	3 cut(s)	359, 413, 668
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	2 cut(s)	207, 744
Sau3AI	GATC	7 cut(s)	26, 187, 214, 359, 413, 598, 668
Sau96I	GGNCC	4 cut(s)	128, 499, 530, 692
ScrFI	CCNGG	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	728, 800
SfcI	CTRYAG	2 cut(s)	245, 877
SinI	GGWCC	3 cut(s)	128, 530, 692
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SnaBI	TACGTA	1 cut(s)	853
SspMI	CTAG	2 cut(s)	518, 618
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	6 cut(s)	49, 181, 301, 332, 766, 878
TaiI	ACGT	2 cut(s)	840, 855
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	3 cut(s)	601, 771, 891
TseI	GCWGC	2 cut(s)	206, 743
TspDTI	ATGAA	2 cut(s)	325, 566
TspRI	CASTG	3 cut(s)	601, 771, 891
VpaK11BI	GGWCC	3 cut(s)	128, 530, 692
XmiI	GTMKAC	1 cut(s)	855
XspI	CTAG	2 cut(s)	518, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.