MD16G1020800.v1.1

TIFY

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
1492513 .. 1504489
11977 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1020800.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGGAGAGAGATTTCTTGGGTTTGAACTCAAAGGAGCCAGTGGTTGTGGTGAAGGAGGAGACCAACAACGATGGCGGCAAAGACCCAGGGTATGGAAGAGGTGGAAGGGCACATTGGCCCTTTCTAAGCCAGGTCTCTGCAGTTCCTCAGTTTATGTCCTTCAAAGCTGCTCAAGATGATAGGACTAAAAAAATGGTACCTGATTCATTCTTGTCTTCCGTCTCTGCGGGTGCATTTGACCCTTGTCAAAAACAAACTACATGTGAATCTCAGAAGAACTTCAATCACGATAGGCAAGGTGGGATTCATTTTTCTCTGACAGCTTATCCTAGGCAACGTTATATGCATTCTGTGCACCGTCCTCATGACACAAAGATGATTTCAGTTACCAGTCAAGGGATTTCTGTTCCAATGAGCAACCCTTACTTGAAGAATCACTTTACTACTACTGGTCAGAATTTTTCCACAACTACCATGAAGCATACGGCTCCACCTTCAGCTCTTCCCGTTACAGGTGGTTCCATTGCTGGGATCACTGAGCCGTGGAACAATGTCAAGACCTCTGGGTCACCTTCACAATTGACAATCTTTTACGCTGGTACTGTGAATGTCTATGATGATATCTCCCCTGAGAAGGCTCAGGCACTGATGCTTTTGGCTGGAAACAGTTGTTCTAACTCCTCTAGTGCTGCACAGCCCAAAGCTCAAGCACCGAGTGCAAAGTTGGCAGCGGAAGACGGTGTTCCTGTGAATCAGCGTACAAATATACCCCCACCTGCTCTTTCTAGCCCCTTATCATCTGTTTCTTCACATACTGGTTCCCAGTCAGTAAGTGGGTCCTCCAGCACTGATGAACTAATGTCAGCTAGAACGACCGGACGTCCAACCAGTCCTGTTAACAAAATGGAGGCTCCAGAAACAGCAAATGCAGTTCGATCTGTTGCTGCGACTTCTATGATTCCTTCTGCTGTTCCACAGGCTCGCAAAGCATCCTTGGCTCGATTTTTAGAGAAGCGCAAGGAAAGGGTGATGAGTGCAGCACCATACAATTTCGACAAGAAATCACCGGAATATGGCACTCCGGAATCCAACGGAGTGAATTTTGGTCAACAAGGAGAACAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

376

Amino Acids

40.17

Weight (kDa)

9.31

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 190 - 221 7.1e-17 tify domain
Jas_motif PF09425 325 - 349 7.6e-14 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 784
AasI GACNNNNNNGTC 1 cut(s) 565
AatII GACGTC 1 cut(s) 883
Acc36I ACCTGC 1 cut(s) 784
Acc65I GGTACC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 196
AccB7I CCANNNNNTGG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 1081
AciI CCGC 3 cut(s) 75, 227, 731
AclI AACGTT 1 cut(s) 337
AclWI GGATC 1 cut(s) 539
AcsI RAATTY 2 cut(s) 457, 1099
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 880
AdeI CACNNNGTG 1 cut(s) 716
AfaI GTAC 3 cut(s) 198, 601, 760
AfiI CCNNNNNNNGG 6 cut(s) 92, 396, 512, 528, 634, 1073
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 4 cut(s) 25, 163, 283, 430
AhdI GACNNNNNGTC 1 cut(s) 879
AjnI CCWGG 2 cut(s) 85, 129
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 5 cut(s) 167, 323, 500, 704, 866
AluI AGCT 5 cut(s) 167, 323, 500, 704, 866
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 53, 139, 226
Alw44I GTGCAC 1 cut(s) 353
AlwI GGATC 1 cut(s) 539
AlwNI CAGNNNCTG 1 cut(s) 646
Aor13HI TCCGGA 1 cut(s) 1081
AoxI GGCC 1 cut(s) 116
ApaLI GTGCAC 1 cut(s) 353
ApeKI GCWGC 5 cut(s) 167, 689, 728, 944, 1037
ApoI RAATTY 2 cut(s) 457, 1099
Asp700I GAANNNNTTC 1 cut(s) 278
Asp718I GGTACC 1 cut(s) 196
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 1 cut(s) 1017
AspS9I GGNCC 2 cut(s) 117, 837
AsuHPI GGTGA 4 cut(s) 61, 561, 1039, 1056
AvaII GGWCC 1 cut(s) 837
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 2 cut(s) 112, 357
BanI GGYRCC 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 207, 741
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 5 cut(s) 154, 676, 740, 931, 1049
BccI CCATC 1 cut(s) 65
BceAI ACGGC 2 cut(s) 501, 526
BciT130I CCWGG 2 cut(s) 87, 131
BcoDI GTCTC 3 cut(s) 53, 139, 226
BfaI CTAG 4 cut(s) 330, 684, 786, 867
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 784
BisI GCNGC 6 cut(s) 76, 168, 690, 729, 945, 1038
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 6 cut(s) 77, 169, 691, 730, 946, 1039
Bme1390I CCNGG 2 cut(s) 87, 131
Bme18I GGWCC 1 cut(s) 837
BmeRI GACNNNNNGTC 1 cut(s) 879
BmgT120I GGNCC 2 cut(s) 117, 837
BmiI GGNNCC 7 cut(s) 36, 198, 489, 520, 820, 838, 912
BmrFI CCNGG 2 cut(s) 87, 131
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 2 cut(s) 639, 998
BmuI ACTGGG 1 cut(s) 817
BoxI GACNNNNGTC 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 207, 741
BpmI CTGGAG 2 cut(s) 826, 897
Bpu10I CCTNAGC 1 cut(s) 639
BpuEI CTTGAG 2 cut(s) 156, 690
BsaHI GRCGYC 1 cut(s) 880
BsaI GGTCTC 2 cut(s) 53, 139
BsaJI CCNNGG 5 cut(s) 85, 86, 329, 542, 993
BsaWI WCCGGW 3 cut(s) 875, 1066, 1081
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 396, 512, 528, 634, 1073
Bse1I ACTGG 6 cut(s) 38, 390, 454, 820, 823, 888
Bse3DI GCAATG 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 1081
BseBI CCWGG 2 cut(s) 87, 131
BseDI CCNNGG 5 cut(s) 85, 86, 329, 542, 993
BseGI GGATG 1 cut(s) 989
BseLI CCNNNNNNNGG 6 cut(s) 92, 396, 512, 528, 634, 1073
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 5 cut(s) 161, 284, 528, 621, 653
BseNI ACTGG 6 cut(s) 38, 390, 454, 820, 823, 888
BseRI GAGGAG 2 cut(s) 71, 670
BseSI GKGCMC 2 cut(s) 112, 357
BseXI GCAGC 5 cut(s) 154, 676, 740, 931, 1049
BseYI CCCAGC 1 cut(s) 527
BsgI GTGCAG 2 cut(s) 675, 1056
Bsh1285I CGRYCG 1 cut(s) 876
BshFI GGCC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 196
BsiEI CGRYCG 1 cut(s) 876
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 3 cut(s) 876, 1067, 1082
BslI CCNNNNNNNGG 6 cut(s) 92, 396, 512, 528, 634, 1073
BsmAI GTCTC 3 cut(s) 53, 139, 226
BsmBI CGTCTC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 1 cut(s) 118
Bso31I GGTCTC 2 cut(s) 53, 139
Bsp1286I GDGCHC 2 cut(s) 112, 357
Bsp13I TCCGGA 1 cut(s) 1081
Bsp143I GATC 2 cut(s) 531, 935
BspACI CCGC 3 cut(s) 75, 227, 731
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 5 cut(s) 160, 283, 529, 622, 652
BspEI TCCGGA 1 cut(s) 1081
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 7 cut(s) 36, 198, 489, 520, 820, 838, 912
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 784
BspPI GGATC 1 cut(s) 539
BspQI GCTCTTC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 196
BspTNI GGTCTC 2 cut(s) 53, 139
BsrDI GCAATG 1 cut(s) 522
BsrI ACTGG 6 cut(s) 38, 390, 454, 820, 823, 888
BssECI CCNNGG 5 cut(s) 85, 86, 329, 542, 993
BssMI GATC 2 cut(s) 531, 935
BssNI GRCGYC 1 cut(s) 880
BssT1I CCWWGG 2 cut(s) 329, 993
Bst2UI CCWGG 2 cut(s) 87, 131
Bst4CI ACNGT 4 cut(s) 359, 604, 668, 740
Bst6I CTCTTC 2 cut(s) 91, 507
BstACI GRCGYC 1 cut(s) 880
BstAPI GCANNNNNTGC 2 cut(s) 352, 716
BstC8I GCNNGC 1 cut(s) 982
BstDEI CTNAG 6 cut(s) 125, 147, 270, 537, 630, 639
BstDSI CCRYGG 1 cut(s) 542
BstEII GGTNACC 1 cut(s) 567
BstF5I GGATG 1 cut(s) 989
BstHHI GCGC 1 cut(s) 1017
BstKTI GATC 2 cut(s) 534, 938
BstMAI GTCTC 3 cut(s) 53, 139, 226
BstMBI GATC 2 cut(s) 531, 935
BstMCI CGRYCG 1 cut(s) 876
BstMWI GCNNNNNNNGC 5 cut(s) 352, 716, 725, 986, 995
BstNI CCWGG 2 cut(s) 87, 131
BstNSI RCATGY 1 cut(s) 264
BstPAI GACNNNNGTC 1 cut(s) 243
BstPI GGTNACC 1 cut(s) 567
BstSCI CCNGG 2 cut(s) 85, 129
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 2 cut(s) 112, 357
BstV1I GCAGC 5 cut(s) 154, 676, 740, 931, 1049
BstV2I GAAGAC 2 cut(s) 207, 741
BsuRI GGCC 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 542
BtsCI GGATG 1 cut(s) 989
BtsIMutI CAGTG 4 cut(s) 45, 534, 644, 846
BveI ACCTGC 1 cut(s) 784
Cac8I GCNNGC 1 cut(s) 982
CaiI CAGNNNCTG 1 cut(s) 646
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 1017
Cfr13I GGNCC 2 cut(s) 117, 837
Csp6I GTAC 3 cut(s) 197, 600, 759
CviAII CATG 3 cut(s) 261, 365, 475
CviQI GTAC 3 cut(s) 197, 600, 759
DdeI CTNAG 6 cut(s) 125, 147, 270, 537, 630, 639
DpnI GATC 2 cut(s) 533, 937
DpnII GATC 2 cut(s) 531, 935
DraIII CACNNNGTG 1 cut(s) 716
DrdI GACNNNNNNGTC 1 cut(s) 565
DriI GACNNNNNGTC 1 cut(s) 879
DseDI GACNNNNNNGTC 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 91, 507
Eam1105I GACNNNNNGTC 1 cut(s) 879
EarI CTCTTC 2 cut(s) 91, 507
Eco130I CCWWGG 2 cut(s) 329, 993
Eco31I GGTCTC 2 cut(s) 53, 139
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 837
Eco57I CTGAAG 1 cut(s) 480
Eco91I GGTNACC 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 837
EcoO65I GGTNACC 1 cut(s) 567
EcoRII CCWGG 2 cut(s) 85, 129
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 329, 993
EcoT22I ATGCAT 1 cut(s) 348
ErhI CCWWGG 2 cut(s) 329, 993
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 3 cut(s) 264, 368, 478
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 3 cut(s) 260, 364, 474
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 6 cut(s) 76, 168, 690, 729, 945, 1038
FokI GGATG 1 cut(s) 976
Fsp4HI GCNGC 6 cut(s) 76, 168, 690, 729, 945, 1038
FspBI CTAG 4 cut(s) 330, 684, 786, 867
GlaI GCGC 1 cut(s) 1016
GluI GCNGC 6 cut(s) 76, 168, 690, 729, 945, 1038
GsaI CCCAGC 1 cut(s) 531
GsuI CTGGAG 2 cut(s) 826, 897
HaeIII GGCC 1 cut(s) 118
HapII CCGG 3 cut(s) 876, 1067, 1082
HhaI GCGC 1 cut(s) 1017
Hin1I GRCGYC 1 cut(s) 880
Hin1II CATG 3 cut(s) 264, 368, 478
Hin6I GCGC 1 cut(s) 1015
HinP1I GCGC 1 cut(s) 1015
HincII GTYRAC 2 cut(s) 898, 1109
HindII GTYRAC 2 cut(s) 898, 1109
HinfI GANTC 7 cut(s) 203, 266, 304, 433, 751, 958, 1085
HpaI GTTAAC 1 cut(s) 898
HpaII CCGG 3 cut(s) 876, 1067, 1082
HphI GGTGA 4 cut(s) 61, 561, 1039, 1056
Hpy166II GTNNAC 3 cut(s) 355, 898, 1109
Hpy188I TCNGA 3 cut(s) 273, 318, 456
Hpy188III TCNNGA 6 cut(s) 173, 287, 365, 556, 914, 1082
Hpy8I GTNNAC 3 cut(s) 355, 898, 1109
HpyAV CCTTC 7 cut(s) 46, 99, 169, 504, 582, 628, 972
HpyCH4III ACNGT 4 cut(s) 359, 604, 668, 740
HpyCH4IV ACGT 2 cut(s) 337, 880
HpyCH4V TGCA 8 cut(s) 140, 233, 346, 355, 692, 719, 929, 1037
HpyF10VI GCNNNNNNNGC 5 cut(s) 352, 716, 725, 986, 995
HpyF3I CTNAG 6 cut(s) 125, 147, 270, 537, 630, 639
HpySE526I ACGT 2 cut(s) 337, 880
Hsp92I GRCGYC 1 cut(s) 880
Hsp92II CATG 3 cut(s) 264, 368, 478
HspAI GCGC 1 cut(s) 1015
Kpn2I TCCGGA 1 cut(s) 1081
KpnI GGTACC 1 cut(s) 200
KspAI GTTAAC 1 cut(s) 898
Kzo9I GATC 2 cut(s) 531, 935
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 3 cut(s) 34, 493, 916
Lsp1109I GCAGC 5 cut(s) 154, 676, 740, 931, 1049
LweI GCATC 2 cut(s) 639, 998
MaeI CTAG 4 cut(s) 330, 684, 786, 867
MaeII ACGT 2 cut(s) 337, 880
MaeIII GTNAC 3 cut(s) 385, 508, 567
MalI GATC 2 cut(s) 533, 937
MboI GATC 2 cut(s) 531, 935
MboII GAAGA 7 cut(s) 108, 207, 286, 442, 494, 746, 798
MfeI CAATTG 1 cut(s) 578
MhlI GDGCHC 2 cut(s) 112, 357
MluCI AATT 4 cut(s) 457, 578, 1048, 1099
MmeI TCCRAC 2 cut(s) 908, 1113
MnlI CCTC 8 cut(s) 49, 92, 156, 372, 571, 691, 850, 901
Mph1103I ATGCAT 1 cut(s) 348
MroI TCCGGA 1 cut(s) 1081
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 1 cut(s) 897
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 3 cut(s) 876, 1067, 1082
MspR9I CCNGG 2 cut(s) 87, 131
MunI CAATTG 1 cut(s) 578
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 2 cut(s) 87, 131
MwoI GCNNNNNNNGC 5 cut(s) 352, 716, 725, 986, 995
NdeII GATC 2 cut(s) 531, 935
NlaIII CATG 3 cut(s) 264, 368, 478
NlaIV GGNNCC 7 cut(s) 36, 198, 489, 520, 820, 838, 912
NmuCI GTSAC 1 cut(s) 567
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 1 cut(s) 264
PagI TCATGA 1 cut(s) 364
PaqCI CACCTGC 1 cut(s) 784
PasI CCCWGGG 1 cut(s) 86
PciI ACATGT 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 507
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 7 cut(s) 203, 266, 304, 433, 751, 958, 1085
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 6 cut(s) 77, 169, 691, 730, 946, 1039
PpuMI RGGWCCY 1 cut(s) 837
PscI ACATGT 1 cut(s) 260
PshAI GACNNNNGTC 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 837
Psp6I CCWGG 2 cut(s) 85, 129
PspEI GGTNACC 1 cut(s) 567
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 2 cut(s) 85, 129
PspN4I GGNNCC 7 cut(s) 36, 198, 489, 520, 820, 838, 912
PspPI GGNCC 2 cut(s) 117, 837
PspPPI RGGWCCY 1 cut(s) 837
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 646
RsaI GTAC 3 cut(s) 198, 601, 760
RsaNI GTAC 3 cut(s) 197, 600, 759
RseI CAYNNNNRTG 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 1 cut(s) 897
SatI GCNGC 6 cut(s) 76, 168, 690, 729, 945, 1038
Sau3AI GATC 2 cut(s) 531, 935
Sau96I GGNCC 2 cut(s) 117, 837
ScrFI CCNGG 2 cut(s) 87, 131
SduI GDGCHC 2 cut(s) 112, 357
SfaNI GCATC 2 cut(s) 639, 998
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 837
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 171, 705
SmoI CTYRAG 2 cut(s) 171, 705
Sse9I AATT 4 cut(s) 457, 578, 1048, 1099
SsiI CCGC 3 cut(s) 75, 227, 731
SspMI CTAG 4 cut(s) 330, 684, 786, 867
StyD4I CCNGG 2 cut(s) 85, 129
StyI CCWWGG 2 cut(s) 329, 993
TaaI ACNGT 4 cut(s) 359, 604, 668, 740
TaiI ACGT 2 cut(s) 340, 883
TaqI TCGA 3 cut(s) 934, 1000, 1053
TasI AATT 4 cut(s) 457, 578, 1048, 1099
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 7 cut(s) 203, 266, 304, 433, 751, 958, 1085
Tru1I TTAA 1 cut(s) 897
Tru9I TTAA 1 cut(s) 897
TscAI CASTG 4 cut(s) 45, 541, 651, 853
TseFI GTSAC 1 cut(s) 567
TseI GCWGC 5 cut(s) 167, 689, 728, 944, 1037
Tsp45I GTSAC 1 cut(s) 567
TspDTI ATGAA 4 cut(s) 195, 296, 491, 867
TspGWI ACGGA 2 cut(s) 208, 1107
TspRI CASTG 4 cut(s) 45, 541, 651, 853
Van91I CCANNNNNTGG 1 cut(s) 92
VneI GTGCAC 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 837
XapI RAATTY 2 cut(s) 457, 1099
XceI RCATGY 1 cut(s) 264
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmaJI CCTAGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 4 cut(s) 330, 684, 786, 867
ZraI GACGTC 1 cut(s) 881
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.