Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Forward (+)

31906784 .. 31910437

Gene Structure 3654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33850.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGCAACCCATACTTGAAGAATCATTTTGCATCTATGGGTCAGAATTTTGCTGTCACTACCACCAAGCAACAATTCTTTGGAGGAATGCCTGTTACTACTCAATATTCAGTTCCTCCAAGTCCAGGGTCCATTGTTGGGACCACTGAACCACGGATCAATGTCAACACATCTGGGTCTCCTTCTCAGATGACAATTTTCTATGATGGTAGCGTGAATGTCTATAATGATATCTCCCCTGAGAAGGCTCAGGCTATGATGGTTTTAGCTCAGAATGGTTCTTCCGTCCCTTCTAATGGTGCGCACTCAAAAGCTGAAGCACCAAGAGCAAAGTTCCCTGCCGAAGATTGTGTTCCATCAAATCAGACTATAAATACCCCACCTTCTGCTTTTCCTAGTCAGTTGTCAGTTTCTTCACATACTGGCATCCAATCAGTAAGTGGGTCCACAAGCACTGATGAACTGATGGCAGCTAAAACCACAGGGCTTCCAACAGCTCCTGTTAGTAAAGTGGAGCCTCCAAGAACTGCAGTTAAATCTGTTGCTGCAACAACTATGAATCATTCTGCTATTCCACAGGCTCGCAAAGCATCCTTGGCTCGATTTTTGGGGAAGCGCAAGGAAAGGGTAATAAATGCAGCACCATACAACTTGAGCAAGAAATCTCCAGAAGGCAGCAAACCAGAATCTAATGGAATGAATTCCTCCACAAGCAGAGGAGAACAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

244

Amino Acids

25.55

Weight (kDa)

9.74

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	202 - 232	3.7e-14	tify domain
Jas_motif	PF09425	334 - 351	3.5e-08	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	46, 700
AcuI	CTGAAG	1 cut(s)	336
AfiI	CCNNNNNNNGG	4 cut(s)	125, 138, 244, 296
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	269, 314, 473, 497
AluI	AGCT	4 cut(s)	269, 314, 473, 497
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	500
ApeKI	GCWGC	4 cut(s)	470, 545, 638, 675
ApoI	RAATTY	2 cut(s)	46, 700
Asp700I	GAANNNNTTC	1 cut(s)	700
AspLEI	GCGC	2 cut(s)	304, 618
AspS9I	GGNCC	3 cut(s)	129, 141, 444
AvaII	GGWCC	3 cut(s)	129, 141, 444
BbvI	GCAGC	4 cut(s)	482, 532, 650, 687
BccI	CCATC	4 cut(s)	200, 253, 364, 460
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	4 cut(s)	471, 546, 639, 676
BlsI	GCNGC	4 cut(s)	472, 547, 640, 677
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	3 cut(s)	129, 141, 444
BmgT120I	GGNCC	3 cut(s)	129, 141, 444
BmiI	GGNNCC	4 cut(s)	130, 142, 445, 516
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	3 cut(s)	41, 435, 599
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	673
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	125, 152, 594
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 138, 244, 296
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	3 cut(s)	125, 152, 594
BseGI	GGATG	2 cut(s)	426, 590
BseLI	CCNNNNNNNGG	4 cut(s)	125, 138, 244, 296
BseMII	CTCAG	4 cut(s)	200, 231, 263, 284
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	732
BseXI	GCAGC	4 cut(s)	482, 532, 650, 687
BslFI	GGGAC	2 cut(s)	154, 272
BslI	CCNNNNNNNGG	4 cut(s)	125, 138, 244, 296
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	2 cut(s)	154, 272
BsmI	GAATGC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	156
BspCNI	CTCAG	4 cut(s)	199, 232, 262, 283
BspLI	GGNNCC	4 cut(s)	130, 142, 445, 516
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	3 cut(s)	125, 152, 594
BssMI	GATC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	4 cut(s)	186, 240, 249, 270
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	426, 590
BstHHI	GCGC	2 cut(s)	304, 618
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 587, 596
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	4 cut(s)	482, 532, 650, 687
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	426, 590
BtsIMutI	CAGTG	2 cut(s)	144, 453
Cac8I	GCNNGC	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	2 cut(s)	304, 618
Cfr13I	GGNCC	3 cut(s)	129, 141, 444
DdeI	CTNAG	4 cut(s)	186, 240, 249, 270
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	3 cut(s)	129, 141, 444
Eco57I	CTGAAG	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
FaiI	YATR	9 cut(s)	13, 38, 204, 225, 257, 371, 420, 557, 646
FaqI	GGGAC	2 cut(s)	154, 272
Fnu4HI	GCNGC	4 cut(s)	471, 546, 639, 676
FokI	GGATG	2 cut(s)	413, 577
Fsp4HI	GCNGC	4 cut(s)	471, 546, 639, 676
FspAI	RTGCGCAY	1 cut(s)	303
FspBI	CTAG	1 cut(s)	396
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	2 cut(s)	303, 617
GluI	GCNGC	4 cut(s)	471, 546, 639, 676
GsuI	CTGGAG	1 cut(s)	651
HhaI	GCGC	2 cut(s)	304, 618
Hin6I	GCGC	2 cut(s)	302, 616
HinP1I	GCGC	2 cut(s)	302, 616
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	22, 559, 686
Hpy166II	GTNNAC	2 cut(s)	166, 447
Hpy188I	TCNGA	4 cut(s)	45, 189, 273, 366
Hpy188III	TCNNGA	1 cut(s)	668
Hpy8I	GTNNAC	2 cut(s)	166, 447
HpyAV	CCTTC	5 cut(s)	192, 238, 300, 393, 665
HpyCH4V	TGCA	4 cut(s)	32, 530, 548, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 587, 596
HpyF3I	CTNAG	4 cut(s)	186, 240, 249, 270
HspAI	GCGC	2 cut(s)	302, 616
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	2 cut(s)	502, 514
Lsp1109I	GCAGC	4 cut(s)	482, 532, 650, 687
LweI	GCATC	3 cut(s)	41, 435, 599
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	55, 94
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	4 cut(s)	31, 273, 356, 405
MluCI	AATT	4 cut(s)	46, 74, 195, 700
MmeI	TCCRAC	1 cut(s)	515
MnlI	CCTC	5 cut(s)	77, 126, 528, 710, 715
MroXI	GAANNNNTTC	1 cut(s)	700
MseI	TTAA	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	326, 587, 596
NdeII	GATC	1 cut(s)	156
NlaIV	GGNNCC	4 cut(s)	130, 142, 445, 516
NmuCI	GTSAC	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	303
PctI	GAATGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	700
PfeI	GAWTC	3 cut(s)	22, 559, 686
PkrI	GCNGC	4 cut(s)	472, 547, 640, 677
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	4 cut(s)	130, 142, 445, 516
PspPI	GGNCC	3 cut(s)	129, 141, 444
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	4 cut(s)	471, 546, 639, 676
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	3 cut(s)	129, 141, 444
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	5 cut(s)	271, 316, 385, 475, 499
SfaNI	GCATC	3 cut(s)	41, 435, 599
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	3 cut(s)	129, 141, 444
SmlI	CTYRAG	1 cut(s)	652
SmoI	CTYRAG	1 cut(s)	652
Sse9I	AATT	4 cut(s)	46, 74, 195, 700
SspI	AATATT	1 cut(s)	107
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	594
TaqI	TCGA	1 cut(s)	601
TasI	AATT	4 cut(s)	46, 74, 195, 700
TfiI	GAWTC	3 cut(s)	22, 559, 686
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	2 cut(s)	151, 460
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	470, 545, 638, 675
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	474, 572, 713
TspGWI	ACGGA	2 cut(s)	169, 274
TspRI	CASTG	2 cut(s)	151, 460
VpaK11BI	GGWCC	3 cut(s)	129, 141, 444
XapI	RAATTY	2 cut(s)	46, 700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	700
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.