MD14G1238100.v1.1

TIFY 6B-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
31732049 .. 31736399
4351 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1238100.v1.1.491

Sequence Viewer

Length: 1134 bp
ATGGAGAGGGATTTTCTGGGTTTGAGCTCCAACAATGGTTGTGTGACTCTGAAAGAAGAAACCAATGATGAAGCCAAGAATTCAGCGGTACCTAGAAGTTCAGGGATGCAGTGGTCGTTTTCAAACAAGGTTTCTGCACTTCCGCAATTCCTGTCTTTCAAGGCTCCTCAAGAAGGTAGGCCAAGAAAAGCTGTTCATCATAATACATCTGCATTTATGACTATTTCAACTGCTGATGCTTTTCACTCCAGCCAGAAGTCGTTCTCTGGAGTAATTCAGAAAAATTTCGTTCTTGATAAGCAAGCTGGAAACCACTGTGGAATGACAGTATATCCTGTGCCGCAGTTTGATGCACATTTAGTTCATCACTCCCAGATCCCAATTACTTTGAGTTCTCCAGTTCTCCAATCCCATGCTCCTGTTGGGAATAACGGATCTACCATAAAACTGCAATCACTAGGAGGAGTTCCAGTTTTGTCCCCTGTATCTGCTCATCCTTCTACAACCTCCGTAGTTGGTACCACCGATCTCAGGAACGCATCCAAGTCTGCTGGGGCGCCTGCTCAGTTAACCATCTTTTATGCTGGTTCTGTGAACGTTTATAATGATATATCTCCTGAGAAGGCCCAGGCTATTATGTTGCTGGCTGGAGATGGATTGTCTCCGACTCATTGTAAATCACCTTCTGTAGCTCAAGTGCATGCACCGATACCTGGGCCTTCACTAGGAGGTGATGGTTTTTTCGGGAACCAGTCCCATATTAAATGTTCAGTCTCTGCGCTTCCAAGCCCTCTTTTTGCAACTTCACATGGTGGTTCTCACGTTGGAGGAACATTTAATAGCACTAATGAATTAGCTATAGTGAAACCCGCGTCTCCTATTGACCGCTCAGAGCCTTCTCCAGTAGTCAGTTCAGTGGGATCGGCTATGACGAACCTGATTCCAGCAGTACCTGTGCCTCAAGCACGTAAAGCATCCTTGGCTCGGTTTTTCGAGAAGCGCAAGGAAAGGATGACGAGTACAGCACCATACAATGTCAGCGGGAAATCTCCAGACCGCAGCATGCCCGGATCACAAGGTTTGAGTTTCTCGTTCAACTCCTCCGGTTCTTGTCCTCCCCAAGCTACAAATTAG

Protein Analysis

378

Amino Acids

39.44

Weight (kDa)

9.3

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 186 - 217 2.1e-17 tify domain
Jas_motif PF09425 320 - 344 5.1e-13 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
Acc65I GGTACC 2 cut(s) 88, 518
AccB1I GGYRCC 3 cut(s) 88, 518, 556
AccBSI CCGCTC 1 cut(s) 888
AccII CGCG 1 cut(s) 872
AciI CCGC 7 cut(s) 86, 143, 341, 870, 886, 1041, 1057
AclI AACGTT 1 cut(s) 597
AclWI GGATC 4 cut(s) 370, 442, 928, 1078
AcsI RAATTY 2 cut(s) 79, 283
AcyI GRCGYC 1 cut(s) 557
AdeI CACNNNGTG 1 cut(s) 812
AfaI GTAC 4 cut(s) 90, 520, 951, 1021
AfiI CCNNNNNNNGG 5 cut(s) 173, 531, 713, 725, 984
AgsI TTSAA 4 cut(s) 123, 160, 228, 1096
AjnI CCWGG 2 cut(s) 627, 712
AluBI AGCT 6 cut(s) 27, 191, 305, 692, 857, 1124
AluI AGCT 6 cut(s) 27, 191, 305, 692, 857, 1124
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 3 cut(s) 666, 778, 879
AlwI GGATC 4 cut(s) 370, 442, 928, 1078
AlwNI CAGNNNCTG 2 cut(s) 776, 953
AoxI GGCC 3 cut(s) 179, 624, 716
ApeKI GCWGC 1 cut(s) 1059
ApoI RAATTY 2 cut(s) 79, 283
Asp700I GAANNNNTTC 2 cut(s) 260, 284
Asp718I GGTACC 2 cut(s) 88, 518
AspLEI GCGC 3 cut(s) 559, 781, 1002
AspS9I GGNCC 2 cut(s) 625, 716
AsuC2I CCSGG 1 cut(s) 1068
AsuHPI GGTGA 2 cut(s) 672, 743
BanI GGYRCC 3 cut(s) 88, 518, 556
BanII GRGCYC 1 cut(s) 29
BarI GAAGNNNNNNTAC 2 cut(s) 667, 699
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 1071
BccI CCATC 3 cut(s) 581, 647, 728
BciT130I CCWGG 2 cut(s) 629, 714
BcnI CCSGG 1 cut(s) 1068
BcoDI GTCTC 3 cut(s) 666, 778, 879
BfaI CTAG 3 cut(s) 93, 458, 725
BfmI CTRYAG 2 cut(s) 687, 858
BfoI RGCGCY 1 cut(s) 560
BisI GCNGC 2 cut(s) 341, 1060
BlsI GCNGC 2 cut(s) 342, 1061
Bme1390I CCNGG 3 cut(s) 629, 714, 1068
BmgT120I GGNCC 2 cut(s) 625, 716
BmiI GGNNCC 5 cut(s) 90, 165, 520, 558, 749
BmrFI CCNGG 3 cut(s) 629, 714, 1068
BmsI GCATC 5 cut(s) 96, 226, 340, 548, 983
BpmI CTGGAG 6 cut(s) 232, 288, 381, 669, 885, 1035
BpuEI CTTGAG 3 cut(s) 153, 678, 945
BpuMI CCSGG 1 cut(s) 1068
BsaAI YACGTR 1 cut(s) 968
BsaHI GRCGYC 1 cut(s) 557
BsaJI CCNNGG 3 cut(s) 627, 713, 978
BsaWI WCCGGW 1 cut(s) 1103
BsaXI ACNNNNNCTCC 2 cut(s) 456, 486
Bsc4I CCNNNNNNNGG 5 cut(s) 173, 531, 713, 725, 984
Bse1I ACTGG 4 cut(s) 398, 470, 751, 902
BseBI CCWGG 2 cut(s) 629, 714
BseDI CCNNGG 3 cut(s) 627, 713, 978
BseGI GGATG 5 cut(s) 111, 493, 539, 974, 1017
BseLI CCNNNNNNNGG 5 cut(s) 173, 531, 713, 725, 984
BseMII CTCAG 4 cut(s) 544, 578, 609, 903
BseNI ACTGG 4 cut(s) 398, 470, 751, 902
BseRI GAGGAG 3 cut(s) 156, 477, 1090
BseXI GCAGC 1 cut(s) 1071
BseYI CCCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 872
BshFI GGCC 3 cut(s) 181, 626, 718
BshNI GGYRCC 3 cut(s) 88, 518, 556
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 2 cut(s) 1068, 1104
BslFI GGGAC 2 cut(s) 463, 739
BslI CCNNNNNNNGG 5 cut(s) 173, 531, 713, 725, 984
BsmAI GTCTC 3 cut(s) 666, 778, 879
BsmBI CGTCTC 1 cut(s) 879
BsmFI GGGAC 2 cut(s) 463, 739
BsnI GGCC 3 cut(s) 181, 626, 718
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 5 cut(s) 375, 434, 526, 920, 1070
BspACI CCGC 7 cut(s) 86, 143, 341, 870, 886, 1041, 1057
BspANI GGCC 3 cut(s) 181, 626, 718
BspCNI CTCAG 4 cut(s) 543, 577, 610, 902
BspFNI CGCG 1 cut(s) 872
BspLI GGNNCC 5 cut(s) 90, 165, 520, 558, 749
BspPI GGATC 4 cut(s) 370, 442, 928, 1078
BspT107I GGYRCC 3 cut(s) 88, 518, 556
BsrBI CCGCTC 1 cut(s) 888
BsrI ACTGG 4 cut(s) 398, 470, 751, 902
BssECI CCNNGG 3 cut(s) 627, 713, 978
BssMI GATC 5 cut(s) 375, 434, 526, 920, 1070
BssNI GRCGYC 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 978
Bst2UI CCWGG 2 cut(s) 629, 714
Bst4CI ACNGT 2 cut(s) 317, 328
BstACI GRCGYC 1 cut(s) 557
BstBAI YACGTR 1 cut(s) 968
BstC8I GCNNGC 5 cut(s) 303, 561, 645, 702, 1064
BstDEI CTNAG 4 cut(s) 530, 564, 618, 889
BstENI CCTNNNNNAGG 2 cut(s) 171, 723
BstF5I GGATG 5 cut(s) 111, 493, 539, 974, 1017
BstFNI CGCG 1 cut(s) 872
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 3 cut(s) 559, 781, 1002
BstKTI GATC 5 cut(s) 378, 437, 529, 923, 1073
BstMAI GTCTC 3 cut(s) 666, 778, 879
BstMBI GATC 5 cut(s) 375, 434, 526, 920, 1070
BstMWI GCNNNNNNNGC 2 cut(s) 971, 980
BstNI CCWGG 2 cut(s) 629, 714
BstNSI RCATGY 2 cut(s) 704, 1066
BstSCI CCNGG 3 cut(s) 627, 712, 1066
BstSFI CTRYAG 2 cut(s) 687, 858
BstUI CGCG 1 cut(s) 872
BstV1I GCAGC 1 cut(s) 1071
BstX2I RGATCY 2 cut(s) 375, 434
BstYI RGATCY 2 cut(s) 375, 434
BsuRI GGCC 3 cut(s) 181, 626, 718
BtsCI GGATG 5 cut(s) 111, 493, 539, 974, 1017
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 3 cut(s) 116, 313, 921
Cac8I GCNNGC 5 cut(s) 303, 561, 645, 702, 1064
CaiI CAGNNNCTG 2 cut(s) 776, 953
CfoI GCGC 3 cut(s) 559, 781, 1002
Cfr13I GGNCC 2 cut(s) 625, 716
CseI GACGC 1 cut(s) 861
Csp6I GTAC 4 cut(s) 89, 519, 950, 1020
CviAII CATG 4 cut(s) 413, 701, 809, 1063
CviQI GTAC 4 cut(s) 89, 519, 950, 1020
DdeI CTNAG 4 cut(s) 530, 564, 618, 889
DinI GGCGCC 1 cut(s) 558
DpnI GATC 5 cut(s) 377, 436, 528, 922, 1072
DpnII GATC 5 cut(s) 375, 434, 526, 920, 1070
DraIII CACNNNGTG 1 cut(s) 812
Ecl136II GAGCTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 978
Eco24I GRGCYC 1 cut(s) 29
Eco53kI GAGCTC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 27
EcoNI CCTNNNNNAGG 2 cut(s) 171, 723
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 627, 712
EcoT14I CCWWGG 1 cut(s) 978
EcoT38I GRGCYC 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 558
EheI GGCGCC 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 978
Esp3I CGTCTC 1 cut(s) 879
FaeI CATG 4 cut(s) 416, 704, 812, 1066
FaqI GGGAC 2 cut(s) 463, 739
FatI CATG 4 cut(s) 412, 700, 808, 1062
FauI CCCGC 2 cut(s) 877, 1034
Fnu4HI GCNGC 2 cut(s) 341, 1060
FokI GGATG 5 cut(s) 118, 480, 526, 961, 1024
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 341, 1060
FspBI CTAG 3 cut(s) 93, 458, 725
GlaI GCGC 3 cut(s) 558, 780, 1001
GluI GCNGC 2 cut(s) 341, 1060
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 6 cut(s) 232, 288, 381, 669, 885, 1035
HaeII RGCGCY 1 cut(s) 560
HaeIII GGCC 3 cut(s) 181, 626, 718
HapII CCGG 2 cut(s) 1068, 1104
HgaI GACGC 1 cut(s) 861
HhaI GCGC 3 cut(s) 559, 781, 1002
Hin1I GRCGYC 1 cut(s) 557
Hin1II CATG 4 cut(s) 416, 704, 812, 1066
Hin6I GCGC 3 cut(s) 557, 779, 1000
HinP1I GCGC 3 cut(s) 557, 779, 1000
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HinfI GANTC 3 cut(s) 46, 667, 940
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 2 cut(s) 1068, 1104
HphI GGTGA 2 cut(s) 672, 743
Hpy166II GTNNAC 2 cut(s) 570, 595
Hpy188I TCNGA 4 cut(s) 51, 279, 666, 892
Hpy188III TCNNGA 8 cut(s) 170, 267, 293, 532, 617, 745, 994, 1052
Hpy8I GTNNAC 2 cut(s) 570, 595
HpyAV CCTTC 6 cut(s) 167, 507, 616, 693, 729, 906
HpyCH4III ACNGT 2 cut(s) 317, 328
HpyCH4IV ACGT 3 cut(s) 597, 822, 967
HpyCH4V TGCA 8 cut(s) 109, 137, 212, 353, 451, 700, 704, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 971, 980
HpyF3I CTNAG 4 cut(s) 530, 564, 618, 889
HpySE526I ACGT 3 cut(s) 597, 822, 967
Hsp92I GRCGYC 1 cut(s) 557
Hsp92II CATG 4 cut(s) 416, 704, 812, 1066
HspAI GCGC 3 cut(s) 557, 779, 1000
KasI GGCGCC 1 cut(s) 556
KpnI GGTACC 2 cut(s) 92, 522
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 5 cut(s) 375, 434, 526, 920, 1070
LmnI GCTCC 3 cut(s) 32, 169, 421
Lsp1109I GCAGC 1 cut(s) 1071
LweI GCATC 5 cut(s) 96, 226, 340, 548, 983
MaeI CTAG 3 cut(s) 93, 458, 725
MaeII ACGT 3 cut(s) 597, 822, 967
MaeIII GTNAC 1 cut(s) 43
MalI GATC 5 cut(s) 377, 436, 528, 922, 1072
MbiI CCGCTC 1 cut(s) 888
MboI GATC 5 cut(s) 375, 434, 526, 920, 1070
MboII GAAGA 1 cut(s) 68
MflI RGATCY 2 cut(s) 375, 434
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 7 cut(s) 79, 146, 273, 283, 381, 851, 1129
Mly113I GGCGCC 1 cut(s) 557
MlyI GAGTC 2 cut(s) 40, 661
MmeI TCCRAC 3 cut(s) 54, 689, 805
MnlI CCTC 9 cut(s) 177, 455, 517, 722, 801, 821, 969, 1111, 1125
MroXI GAANNNNTTC 2 cut(s) 260, 284
MseI TTAA 3 cut(s) 569, 762, 837
MspA1I CMGCKG 2 cut(s) 86, 1041
MspI CCGG 2 cut(s) 1068, 1104
MspR9I CCNGG 3 cut(s) 629, 714, 1068
MvaI CCWGG 2 cut(s) 629, 714
MvnI CGCG 1 cut(s) 872
MwoI GCNNNNNNNGC 2 cut(s) 971, 980
NarI GGCGCC 1 cut(s) 557
NciI CCSGG 1 cut(s) 1068
NdeII GATC 5 cut(s) 375, 434, 526, 920, 1070
NlaIII CATG 4 cut(s) 416, 704, 812, 1066
NlaIV GGNNCC 5 cut(s) 90, 165, 520, 558, 749
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 2 cut(s) 704, 1066
PaeI GCATGC 2 cut(s) 704, 1066
PcsI WCGNNNNNNNCGW 1 cut(s) 929
PdmI GAANNNNTTC 2 cut(s) 260, 284
PfeI GAWTC 1 cut(s) 940
PkrI GCNGC 2 cut(s) 342, 1061
PleI GAGTC 2 cut(s) 40, 661
PluTI GGCGCC 1 cut(s) 560
PpsI GAGTC 2 cut(s) 40, 661
Ppu21I YACGTR 1 cut(s) 968
PsiI TTATAA 1 cut(s) 603
Psp124BI GAGCTC 1 cut(s) 29
Psp1406I AACGTT 1 cut(s) 597
Psp6I CCWGG 2 cut(s) 627, 712
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 2 cut(s) 627, 712
PspN4I GGNNCC 5 cut(s) 90, 165, 520, 558, 749
PspPI GGNCC 2 cut(s) 625, 716
PstNI CAGNNNCTG 2 cut(s) 776, 953
PsuI RGATCY 2 cut(s) 375, 434
RsaI GTAC 4 cut(s) 90, 520, 951, 1021
RsaNI GTAC 4 cut(s) 89, 519, 950, 1020
SacI GAGCTC 1 cut(s) 29
SaqAI TTAA 3 cut(s) 569, 762, 837
SatI GCNGC 2 cut(s) 341, 1060
Sau3AI GATC 5 cut(s) 375, 434, 526, 920, 1070
Sau96I GGNCC 2 cut(s) 625, 716
SchI GAGTC 2 cut(s) 40, 661
ScrFI CCNGG 3 cut(s) 629, 714, 1068
SduI GDGCHC 1 cut(s) 29
SfaNI GCATC 5 cut(s) 96, 226, 340, 548, 983
SfcI CTRYAG 2 cut(s) 687, 858
SfoI GGCGCC 1 cut(s) 558
SmlI CTYRAG 3 cut(s) 168, 693, 960
SmoI CTYRAG 3 cut(s) 168, 693, 960
SphI GCATGC 2 cut(s) 704, 1066
Sse9I AATT 7 cut(s) 79, 146, 273, 283, 381, 851, 1129
SsiI CCGC 7 cut(s) 86, 143, 341, 870, 886, 1041, 1057
SspDI GGCGCC 1 cut(s) 556
SspMI CTAG 3 cut(s) 93, 458, 725
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 627, 712, 1066
StyI CCWWGG 1 cut(s) 978
TaaI ACNGT 2 cut(s) 317, 328
TaiI ACGT 3 cut(s) 600, 825, 970
TaqI TCGA 1 cut(s) 993
TasI AATT 7 cut(s) 79, 146, 273, 283, 381, 851, 1129
TatI WGTACW 1 cut(s) 1019
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 1 cut(s) 940
Tru1I TTAA 3 cut(s) 569, 762, 837
Tru9I TTAA 3 cut(s) 569, 762, 837
TscAI CASTG 3 cut(s) 116, 320, 921
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 1059
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 4 cut(s) 84, 185, 353, 864
TspGWI ACGGA 2 cut(s) 447, 499
TspRI CASTG 3 cut(s) 116, 320, 921
XagI CCTNNNNNAGG 2 cut(s) 171, 723
XapI RAATTY 2 cut(s) 79, 283
XceI RCATGY 2 cut(s) 704, 1066
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XmnI GAANNNNTTC 2 cut(s) 260, 284
XspI CTAG 3 cut(s) 93, 458, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.