Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Reverse (-)

23501602 .. 23503434

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGCCAAGAAAAACTGCTCATGATAATTCATCTGCATTTACTACTATATCAACTGCTGATGCTTTTCACTCCAGCCAGAAGTTGTTCTCTGGTGGGATTCAGAAAAATTTCGTTTTTGATAAGCAAGCTGGAAACCACTGTGCAACGACAGTATATCCTATGCCTCAATTTGATGCACATTCAGATTCCGATTACTTTGAGTTCTCCAGTTCTTCAGTCCCATGCTCCTGTTGGGCATATTGGTTCTACCATAAAACTGCAACCACTTGGAGGAGTTCCGGTTCTGGCCCCTGTATCTGCTCTTCCTTCTACAACCTCCGTAGTTGGTACCACTGATCTCAGGAATGCATCCAATTCTTCTGGGGCGCCTGCTCAGTTAACCATCTTTTATGCTGGTTCTGTGAACGTTTATAATGATATATCTCCAGAGAAGGCCCAGGCTATTATGTTACTGGCTGGAAATGGATCATCTCCAACTCATTGTAAGGCAACATCCGTGACTCAAGTGCATGCACCGATACCTAGGCCTTCACTAGGAGGCGACGGTTTTTTCAGGAACCAGTCCCATGTTACATCTTCAGTCTCTGCACTTCCAAGTCCTCTTTCTGCAACTTCATACGTGAGTTCTAACTCTGGAGGAGCATTTAATAGCACCAATGAAATAGCTATAGTGAAACCAGTAGGAACTTCAGCATCTCCTGTTGACCGCTCAGAGCCTTCTACAGAAGTCAGTTCAGTGGGATCGCCTATGACAAACCTGATTCCAGCAGTACCTGTGCCTCAATCACGTAAAGCATCCTTGGCCCGGTTTTTTGAGAAGCGCAAAGAGAGGATGATGAGCACAGCGCCATACAGTGTCAGTAGAAAATCTCCAGACTGCAGCACTCCCGGATCGGAAGGTGTGAGTTTCTCGCTCAACTCTTCGAGTTCTTGTCCTCCCCAGTCTATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

319

Amino Acids

33.49

Weight (kDa)

9.51

Isoelectric Point (pI)

64.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	2 cut(s)	329, 367
AccBSI	CCGCTC	1 cut(s)	711
AciI	CCGC	1 cut(s)	709
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	3 cut(s)	475, 751, 901
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	3 cut(s)	200, 564, 675
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	2 cut(s)	331, 774
AfiI	CCNNNNNNNGG	3 cut(s)	272, 536, 807
AjnI	CCWGG	1 cut(s)	438
AjuI	GAANNNNNNNTTGG	2 cut(s)	589, 621
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	2 cut(s)	130, 668
AluI	AGCT	2 cut(s)	130, 668
Alw21I	GWGCWC	1 cut(s)	845
Alw26I	GTCTC	1 cut(s)	589
AlwI	GGATC	3 cut(s)	475, 751, 901
AlwNI	CAGNNNCTG	2 cut(s)	587, 776
AoxI	GGCC	5 cut(s)	4, 288, 435, 527, 804
ApeKI	GCWGC	1 cut(s)	882
ApoI	RAATTY	1 cut(s)	108
Asp700I	GAANNNNTTC	2 cut(s)	85, 109
Asp718I	GGTACC	1 cut(s)	329
AspA2I	CCTAGG	1 cut(s)	524
AspLEI	GCGC	3 cut(s)	370, 825, 850
AspS9I	GGNCC	4 cut(s)	4, 289, 436, 805
AsuC2I	CCSGG	2 cut(s)	808, 891
AvrII	CCTAGG	1 cut(s)	524
BanI	GGYRCC	2 cut(s)	329, 367
BarI	GAAGNNNNNNTAC	2 cut(s)	288, 320
Bbv12I	GWGCWC	1 cut(s)	845
BbvI	GCAGC	1 cut(s)	894
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	440
BcnI	CCSGG	2 cut(s)	808, 891
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	2 cut(s)	525, 536
BfmI	CTRYAG	3 cut(s)	669, 723, 880
BfoI	RGCGCY	2 cut(s)	371, 851
BisI	GCNGC	1 cut(s)	883
BlnI	CCTAGG	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	884
Bme1390I	CCNGG	3 cut(s)	440, 808, 891
BmgT120I	GGNCC	4 cut(s)	4, 289, 436, 805
BmiI	GGNNCC	4 cut(s)	291, 331, 369, 560
BmrFI	CCNGG	3 cut(s)	440, 808, 891
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	5 cut(s)	51, 165, 359, 704, 806
BmuI	ACTGGG	1 cut(s)	937
BpmI	CTGGAG	5 cut(s)	57, 192, 411, 657, 858
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	2 cut(s)	808, 891
BsaAI	YACGTR	2 cut(s)	622, 791
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	438, 524, 801
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 536, 807
Bse1I	ACTGG	5 cut(s)	209, 459, 562, 680, 943
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	3 cut(s)	438, 524, 801
BseGI	GGATG	4 cut(s)	350, 494, 797, 840
BseLI	CCNNNNNNNGG	3 cut(s)	272, 536, 807
BseMII	CTCAG	3 cut(s)	355, 389, 726
BseNI	ACTGG	5 cut(s)	209, 459, 562, 680, 943
BseRI	GAGGAG	2 cut(s)	288, 654
BseXI	GCAGC	1 cut(s)	894
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	5 cut(s)	6, 290, 437, 529, 806
BshNI	GGYRCC	2 cut(s)	329, 367
BsiHKAI	GWGCWC	1 cut(s)	845
BsiSI	CCGG	3 cut(s)	281, 808, 891
BslFI	GGGAC	2 cut(s)	205, 550
BslI	CCNNNNNNNGG	3 cut(s)	272, 536, 807
BsmAI	GTCTC	1 cut(s)	589
BsmFI	GGGAC	2 cut(s)	205, 550
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	5 cut(s)	6, 290, 437, 529, 806
Bsp1286I	GDGCHC	1 cut(s)	845
Bsp143I	GATC	4 cut(s)	337, 467, 743, 893
BspACI	CCGC	1 cut(s)	709
BspANI	GGCC	5 cut(s)	6, 290, 437, 529, 806
BspCNI	CTCAG	3 cut(s)	354, 388, 725
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	4 cut(s)	291, 331, 369, 560
BspMAI	CTGCAG	1 cut(s)	884
BspPI	GGATC	3 cut(s)	475, 751, 901
BspQI	GCTCTTC	1 cut(s)	309
BspT107I	GGYRCC	2 cut(s)	329, 367
BsrBI	CCGCTC	1 cut(s)	711
BsrI	ACTGG	5 cut(s)	209, 459, 562, 680, 943
BssECI	CCNNGG	3 cut(s)	438, 524, 801
BssMI	GATC	4 cut(s)	337, 467, 743, 893
BssNI	GRCGYC	1 cut(s)	368
BssT1I	CCWWGG	2 cut(s)	524, 801
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	4 cut(s)	142, 153, 548, 857
Bst6I	CTCTTC	2 cut(s)	309, 928
BstACI	GRCGYC	1 cut(s)	368
BstBAI	YACGTR	2 cut(s)	622, 791
BstC8I	GCNNGC	3 cut(s)	128, 372, 513
BstDEI	CTNAG	3 cut(s)	341, 375, 712
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	4 cut(s)	350, 494, 797, 840
BstH2I	RGCGCY	2 cut(s)	371, 851
BstHHI	GCGC	3 cut(s)	370, 825, 850
BstKTI	GATC	4 cut(s)	340, 470, 746, 896
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	4 cut(s)	337, 467, 743, 893
BstMWI	GCNNNNNNNGC	1 cut(s)	803
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	3 cut(s)	438, 806, 889
BstSFI	CTRYAG	3 cut(s)	669, 723, 880
BstV1I	GCAGC	1 cut(s)	894
BsuRI	GGCC	5 cut(s)	6, 290, 437, 529, 806
BtsCI	GGATG	4 cut(s)	350, 494, 797, 840
BtsIMutI	CAGTG	4 cut(s)	138, 333, 744, 862
Cac8I	GCNNGC	3 cut(s)	128, 372, 513
CaiI	CAGNNNCTG	2 cut(s)	587, 776
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	3 cut(s)	370, 825, 850
Cfr13I	GGNCC	4 cut(s)	4, 289, 436, 805
Csp6I	GTAC	2 cut(s)	330, 773
CviAII	CATG	4 cut(s)	22, 224, 512, 569
CviQI	GTAC	2 cut(s)	330, 773
DdeI	CTNAG	3 cut(s)	341, 375, 712
DinI	GGCGCC	1 cut(s)	369
DpnI	GATC	4 cut(s)	339, 469, 745, 895
DpnII	GATC	4 cut(s)	337, 467, 743, 893
Eam1104I	CTCTTC	2 cut(s)	309, 928
EarI	CTCTTC	2 cut(s)	309, 928
Eco130I	CCWWGG	2 cut(s)	524, 801
Eco147I	AGGCCT	1 cut(s)	529
Eco57I	CTGAAG	3 cut(s)	200, 564, 675
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	524, 801
EcoT22I	ATGCAT	1 cut(s)	352
EgeI	GGCGCC	1 cut(s)	369
EheI	GGCGCC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	524, 801
FaeI	CATG	4 cut(s)	25, 227, 515, 572
FaqI	GGGAC	2 cut(s)	205, 550
FatI	CATG	4 cut(s)	21, 223, 511, 568
Fnu4HI	GCNGC	1 cut(s)	883
FokI	GGATG	4 cut(s)	337, 481, 784, 847
Fsp4HI	GCNGC	1 cut(s)	883
FspBI	CTAG	2 cut(s)	525, 536
GlaI	GCGC	3 cut(s)	369, 824, 849
GluI	GCNGC	1 cut(s)	883
GsuI	CTGGAG	5 cut(s)	57, 192, 411, 657, 858
HaeII	RGCGCY	2 cut(s)	371, 851
HaeIII	GGCC	5 cut(s)	6, 290, 437, 529, 806
HapII	CCGG	3 cut(s)	281, 808, 891
HhaI	GCGC	3 cut(s)	370, 825, 850
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	4 cut(s)	25, 227, 515, 572
Hin6I	GCGC	3 cut(s)	368, 823, 848
HinP1I	GCGC	3 cut(s)	368, 823, 848
HincII	GTYRAC	2 cut(s)	381, 706
HindII	GTYRAC	2 cut(s)	381, 706
HinfI	GANTC	4 cut(s)	99, 187, 502, 763
HpaI	GTTAAC	1 cut(s)	381
HpaII	CCGG	3 cut(s)	281, 808, 891
Hpy166II	GTNNAC	3 cut(s)	381, 406, 706
Hpy188I	TCNGA	5 cut(s)	104, 186, 192, 715, 898
Hpy188III	TCNNGA	6 cut(s)	22, 343, 428, 556, 636, 875
Hpy8I	GTNNAC	3 cut(s)	381, 406, 706
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	5 cut(s)	318, 427, 540, 729, 893
HpyCH4III	ACNGT	4 cut(s)	142, 153, 548, 857
HpyCH4IV	ACGT	3 cut(s)	408, 621, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	803
HpyF3I	CTNAG	3 cut(s)	341, 375, 712
HpySE526I	ACGT	3 cut(s)	408, 621, 790
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	4 cut(s)	25, 227, 515, 572
HspAI	GCGC	3 cut(s)	368, 823, 848
KasI	GGCGCC	1 cut(s)	367
KpnI	GGTACC	1 cut(s)	333
KspAI	GTTAAC	1 cut(s)	381
Kzo9I	GATC	4 cut(s)	337, 467, 743, 893
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	2 cut(s)	232, 641
Lsp1109I	GCAGC	1 cut(s)	894
LweI	GCATC	5 cut(s)	51, 165, 359, 704, 806
MaeI	CTAG	2 cut(s)	525, 536
MaeII	ACGT	3 cut(s)	408, 621, 790
MaeIII	GTNAC	3 cut(s)	450, 499, 571
MalI	GATC	4 cut(s)	339, 469, 745, 895
MbiI	CCGCTC	1 cut(s)	711
MboI	GATC	4 cut(s)	337, 467, 743, 893
MboII	GAAGA	5 cut(s)	206, 296, 351, 570, 915
MhlI	GDGCHC	1 cut(s)	845
MluCI	AATT	5 cut(s)	27, 108, 169, 355, 952
Mly113I	GGCGCC	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	9 cut(s)	176, 266, 328, 533, 612, 632, 792, 825, 948
Mph1103I	ATGCAT	1 cut(s)	352
MroXI	GAANNNNTTC	2 cut(s)	85, 109
MseI	TTAA	2 cut(s)	380, 648
MspI	CCGG	3 cut(s)	281, 808, 891
MspR9I	CCNGG	3 cut(s)	440, 808, 891
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	803
NarI	GGCGCC	1 cut(s)	368
NciI	CCSGG	2 cut(s)	808, 891
NdeII	GATC	4 cut(s)	337, 467, 743, 893
NlaIII	CATG	4 cut(s)	25, 227, 515, 572
NlaIV	GGNNCC	4 cut(s)	291, 331, 369, 560
NmuCI	GTSAC	1 cut(s)	499
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	515
PagI	TCATGA	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	529
PciSI	GCTCTTC	1 cut(s)	309
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	2 cut(s)	85, 109
PfeI	GAWTC	3 cut(s)	99, 187, 763
PfoI	TCCNGGA	1 cut(s)	889
PkrI	GCNGC	1 cut(s)	884
PleI	GAGTC	1 cut(s)	496
PluTI	GGCGCC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	496
Ppu21I	YACGTR	2 cut(s)	622, 791
PsiI	TTATAA	1 cut(s)	414
Psp1406I	AACGTT	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	4 cut(s)	291, 331, 369, 560
PspPI	GGNCC	4 cut(s)	4, 289, 436, 805
PstI	CTGCAG	1 cut(s)	884
PstNI	CAGNNNCTG	2 cut(s)	587, 776
RsaI	GTAC	2 cut(s)	331, 774
RsaNI	GTAC	2 cut(s)	330, 773
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	380, 648
SatI	GCNGC	1 cut(s)	883
Sau3AI	GATC	4 cut(s)	337, 467, 743, 893
Sau96I	GGNCC	4 cut(s)	4, 289, 436, 805
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	3 cut(s)	440, 808, 891
SduI	GDGCHC	1 cut(s)	845
SfaNI	GCATC	5 cut(s)	51, 165, 359, 704, 806
SfcI	CTRYAG	3 cut(s)	669, 723, 880
SfoI	GGCGCC	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	5 cut(s)	27, 108, 169, 355, 952
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	1 cut(s)	709
SspDI	GGCGCC	1 cut(s)	367
SspMI	CTAG	2 cut(s)	525, 536
StuI	AGGCCT	1 cut(s)	529
StyD4I	CCNGG	3 cut(s)	438, 806, 889
StyI	CCWWGG	2 cut(s)	524, 801
TaaI	ACNGT	4 cut(s)	142, 153, 548, 857
TaiI	ACGT	3 cut(s)	411, 624, 793
TaqI	TCGA	1 cut(s)	926
TasI	AATT	5 cut(s)	27, 108, 169, 355, 952
TfiI	GAWTC	3 cut(s)	99, 187, 763
Tru1I	TTAA	2 cut(s)	380, 648
Tru9I	TTAA	2 cut(s)	380, 648
TscAI	CASTG	4 cut(s)	145, 340, 744, 862
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	882
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	3 cut(s)	20, 606, 675
TspGWI	ACGGA	2 cut(s)	310, 487
TspRI	CASTG	4 cut(s)	145, 340, 744, 862
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XmaJI	CCTAGG	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	85, 109
XspI	CTAG	2 cut(s)	525, 536
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.